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Bronchi

Bronchi are the main airways of the lungs, branching off from the trachea and dividing into smaller bronchioles.
They play a crucial role in the respiratory system, facilitating the exchange of air between the environment and the alveoli.
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Our AI-driven protocol comparisons identify the mostreproducible and accurate methods, improving the quality of your research.
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Most cited protocols related to «Bronchi»

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Publication 2020
Adenovirus Infections Adrenal Cortex Hormones Antibiotics Bacteria Biological Assay Blood Bronchi Bronchoalveolar Lavage Fluid Complete Blood Count COVID 19 Creatine Kinase Electrolytes Feces Genes, env Influenza Influenza in Birds isolation Kidney Lactate Dehydrogenase Liver Mechanical Ventilation Methylprednisolone Middle East Respiratory Syndrome Coronavirus Nasal Cannula Nose Oligonucleotide Primers Oseltamivir Oxygen Parainfluenza Pathogenicity Patients Pharynx Physical Examination Physicians Pneumonia Real-Time Polymerase Chain Reaction Respiratory Rate Respiratory Syncytial Virus Respiratory System SARS-CoV-2 Serum Severe acute respiratory syndrome-related coronavirus Sputum Tests, Blood Coagulation Tests, Diagnostic Therapeutics Treatment Protocols Virus Virus Release
All CT images were reviewed by two fellowship-trained cardiothoracic radiologists with approximately 5 years of experience each (M.C. and A.B.) by using a viewing console. Images were reviewed independently, and final decisions were reached by consensus. For disagreement between the two primary radiologist interpretations, a third fellowship-trained cardiothoracic radiologist with 10 years of experience (A.J.) adjudicated a final decision. No negative control cases were examined, and no blinding occurred.
For each of the 21 patients, the initial CT scans were evaluated for the following characteristics: (a) presence of ground-glass opacities, (b) presence of consolidation, (c) number of lobes affected by ground-glass or consolidative opacities, (d) degree of lobe involvement in addition to overall lung “total severity score,” (e) presence of nodules, (f) presence of a pleural effusion, (g) presence of thoracic lymphadenopathy (defined as lymph node size of ≥10 mm in short-axis dimension), and (h) presence of underlying lung disease such as emphysema or fibrosis. Other abnormalities (eg, cavitation, reticulation, interlobular septal thickening, calcification, and bronchiectasis) were noted. Ground-glass opacification was defined as hazy increased lung attenuation with preservation of bronchial and vascular margins, and consolidation was defined as opacification with obscuration of margins of vessels and airway walls (7 (link)). Each of the five lung lobes was assessed for degree of involvement and classified as none (0%), minimal (1%–25%), mild (26%–50%), moderate (51%–75%), or severe (76%–100%). No involvement corresponded to a lobe score of 0, minimal involvement to a lobe score of 1, mild involvement to a lobe score of 2, moderate involvement to a lobe score of 3, and severe involvement to a lobe score of 4. An overall lung “total severity score” was reached by summing the five lobe scores (range of possible scores, 0–20). Eight patients underwent follow-up chest CT during the study time window. These scans were also evaluated to assess for change or progression over time, which was evaluated qualitatively with a consensus approach by two of the radiologists (M.C. and A.B.).
Publication 2020
Biologic Preservation Blood Vessel Bronchi Bronchiectasis Calcinosis Chest Congenital Abnormality Disease Progression Epistropheus Fellowships Fibrosis Lung Lung Diseases Lymphadenopathy Nodes, Lymph Patients Pleural Effusion Pulmonary Emphysema Radiologist Radionuclide Imaging Reticulum X-Ray Computed Tomography
We undertook genome-wide genotyping of variants using a new custom Affymetrix Axiom array (UK BiLEVE array; Santa Clara, CA, USA; appendix pp 5–8) that was designed to (1) measure rare coding variation; (2) provide a framework for optimum imputation of non-genotyped variants that are common (MAF >5%) or of low frequency (MAF 1–5%) in the European population, when used in conjunction with a large imputation reference panel of individuals with whole-genome sequence data;21 (link) and (3) optimise coverage of genes and genomic regions with established or putative roles in lung health and disease to enable fine mapping. After thorough sample and variant quality control (appendix pp 8–15), we imputed non-genotyped variants using a combined 1000 Genomes Project Phase 122 (link) and UK10K Project23,24 reference panel (appendix pp 15–16). The data were used to finalise the design of the UK Biobank array, which is being used for genome-wide genotyping and imputation of the remaining UK Biobank participants.
Using data from previously published studies of whole-genome gene expression and genome-wide genotyping,25–29 we assessed whether variants at associated loci (identified as described in the Statistical analysis) regulate levels of mRNA. These expression quantitative trait loci (eQTL) studies included non-tumour lung tissue, blood, and, for variants associated with smoking behaviour, brain. For genes close to peaks of novel signals or genes implicated through eQTL, we assessed differential expression in the lungs of individuals with and without COPD and differential expression in the pseudoglandular and canalicular stages of development of the fetal lung.30,31 Additionally, we generated RNA sequencing data to discover novel transcripts of these genes in human bronchial epithelial cells. We tested all genome-wide meta-analysis p values for enrichment in biological pathways defined in publicly available databases. All functional analyses are described in detail in the appendix (pp 21–23).
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Publication 2015
Biopharmaceuticals BLOOD Brain Bronchi Chronic Obstructive Airway Disease Epithelial Cells Europeans Fetal Development Gene Expression Genes Genome Homo sapiens Lung Neoplasms Quantitative Trait Loci RNA, Messenger Tissues

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Publication 2016
Bronchi Cell Culture Techniques Cells Chir 99021 Culture Media Culture Media, Conditioned Culture Techniques Homo sapiens isolation Laminin Mus Stem Cells Tissues Trachea Trypsin
A total of 66 samples were used for microarray analysis, including paired adjacent normal-tumor samples from 27 patients underwent surgery for lung cancer at the Taipei Veterans General Hospital, two tissue mixtures from the Taichung Veterans General Hospital (one was adjacent normal lung mixtures and the other was lung adenocarcinoma mixtures), two commercial human normal lung tissues (Clontech (Catalog No. 636524) and Stratagene (Catalog No. 735020)), one immortalized, nontumorigenic human bronchial epithelial cell line (NL-20 (ATCC® No. CRL-2503™)) and 7 lung cancer cell lines (A-549 (ATCC® No. CCL-185™), NCI-H1299 (ATCC® No. CRL-5803™), NCI-H661 (ATCC® No. HTB-183™), CL1-0 [33 (link)], CL1-1 [33 (link)], CL1–5 [33 (link)], and CL1–5-F4 [34 (link)]).
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Publication 2007
Adenocarcinoma of Lung Bronchi Cell Lines Homo sapiens Lung Lung Cancer Malignant Neoplasms Microarray Analysis Neoplasms Operative Surgical Procedures Patients Pulmonary Surgical Procedures Tissues

Most recents protocols related to «Bronchi»

Example 14

In contrast to the previous experimental infection using specific pathogen-free Beagles (Crawford et al., 2005), the virus-inoculated mongrel dogs had pneumonia as evidenced by gross and histological analyses of the lungs from days 1 to 6 p.i. In addition to pneumonia, the dogs had rhinitis, tracheitis, bronchitis, and bronchiolitis similar to that described in naturally infected dogs (Crawford et al., 2005). There was epithelial necrosis and erosion of the lining of the airways and bronchial glands with neutrophil and macrophage infiltration of the submucosal tissues (FIG. 5, upper panels). Immunohistochemistry detected viral H3 antigen in the epithelial cells of bronchi, bronchioles, and bronchial glands (FIG. 5, lower panels). No bacterial superinfection was present. The respiratory tissues from the 2 sham-inoculated dogs were normal.

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Patent 2024
Antigens, Viral Autopsy Bacteria Bronchi Bronchioles Bronchiolitis Bronchitis Canis familiaris Epithelial Cells Immunohistochemistry Infection Lung Macrophage Necrosis Neutrophil Pneumonia Respiratory Rate Rhinitis Specific Pathogen Free Superinfection Tissues Tracheitis Virus
BEAS-2B cells were employed in in vitro studies of iron uptake, ferritin levels, and release of inflammatory mediators. This is an immortalized line of normal human bronchial epithelium derived by transfection of primary cells with SV40 early-region genes. BEAS-2B cells were grown to 90–100% confluence on uncoated plastic 12-well plates in keratinocyte growth medium (KGM; Clonetics) which is essentially MCDB 153 medium supplemented with 5 ng/mL human epidermal growth factor, 5 mg/mL insulin, 0.5 mg/mL hydrocortisone, 0.15 mM calcium, bovine pituitary extract, 0.1 mM ethanolamine and 0.1 mM phosphoethanolamine. Fresh medium was provided every 48 h.
THP1 cells, a monocyte-like cell line, were also used in in vitro investigation. These were cultured in 75-cm2 tissue culture flasks using RPMI-1640 (Invitrogen, Carlsbad, CA, USA) supplemented with 10% serum (Invitrogen, Carlsbad, CA, USA) and gentamicin solution (20 μg/mL; Sigma, St. Louis, MO, USA). Incubations were in RPMI-1640 supplemented with serum and gentamicin.
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Publication 2023
Bos taurus Bronchi Calcium Cell Lines Cells Epidermal growth factor Epithelium Ethanolamine Ferritin Genes Gentamicin Homo sapiens Hydrocortisone Inflammation Mediators Insulin Iron Keratinocyte MCDB 153 Monocytes phosphoethanolamine Serum Simian virus 40 Tissues Transfection
Of the 199 samples of primary lung carcinoma obtained by surgery in the Saitama Medical Center, 100 samples which had been preserved and fixed at a high quality, and demonstrated no necrosis or degeneration and positive staining in bronchial gland cells, were prepared for IHC by paraffin section. These 100 samples consisted of 73 AC, 23 SCC, 1 LCC, 2 SmCC and 1 pleomorphic carcinoma case (Table I). Tissues from pathological lesions, together with adjacent normal tissues were fixed in 10% formaldehyde at room temperature for 24 h. Tissues were sliced into small pieces, embedded in paraffin and cut into 3.5 µm sections. Heat-induced epitope was performed using PT Link (cat. no. PT100/PT101; Agilent Technologies, Inc.) and EnVisionTM FLEX Target Retrieval Solution, High pH (pH 9.0; cat. no. S2367; Agilent Technologies, Inc.) for TFF1 and TFF3, and Low pH (pH 6.0; cat. no. #S2031; Agilent Technologies, Inc.) for TFF-2 at 95°C for 30 min. As the antibodies used for ELISA did not react in paraffin-embedded tissues, commercialized primary antibodies as follows were used: Anti-TFF1 rabbit polyclonal (1:350; cat. no. PA5-31863; Invitrogen; Thermo Fisher Scientific, Inc.), anti-TFF2, rabbit polyclonal (1:50; cat. no. ab131147; Abcam) and anti-TFF3 rabbit monoclonal (1:300; cat. no. ab108599; Abcam). Sections were incubated with the blocking solution included in the kit for 20 min at room temperature, with primary antibodies at 4°C overnight and with secondary antibodies for 20 min at room temperature and visualization was performed with a Catalyzed Signal Amplification System II kit which included secondary antibodies (cat. no. K1497 and K1501; Agilent Technologies, Inc.). A total of 5 high magnification fields of view were randomly selected from each section and 200 cells were counted per field. Images were digitally captured using a BX51 bright-field microscope (Olympus Corporation) equipped with a DP-72 digital camera in conjunction with the cellSens imaging software (version 1.18, Olympus Corporation). Adobe Photoshop was used for image processing (CS4 Extended; Adobe Systems Europe, Ltd.)
IHC score was determined semi-quantitatively by multiplication of the ‘positive fraction’ with the ‘intensity-score’ according to the following system. Firstly, the positive fraction was sub-divided as follows: i) 0, no staining; ii) 1, <10% staining; iii) 2, 10–50% staining; and iv) 3, >50% staining of cells with intensity score >0. Secondly, intensity-score was determined as follows: i) 0 if there was no staining or staining was weaker than that in non-neoplastic cells; ii) 1 if the staining was the same as in non-neoplastic cells; and iii) 2 if there was more intense staining than in the non-neoplastic cells. An IHC score >0 was defined as ‘positive’ (44 (link)). Staining was evaluated by two observers and discordance was resolved by discussion.
Publication 2023
AC-73 Antibodies Bronchi Carcinoma Cells Enzyme-Linked Immunosorbent Assay Epitopes Fingers Formaldehyde Lung Cancer Microscopy Necrosis Neoplasms Operative Surgical Procedures Paraffin Paraffin Embedding Rabbits TFF1 protein, human Tissues Trefoil Factor-2
Primary human lung fibroblast (Cat# CC-2512) and small airway epithelial cells (SAEC) (Cat# CC-2547) were purchased from Lonza. Lung fibroblasts were cultured in FGM-2 Fibroblast Growth Medium (Cat# CC-3132), and SAEC were cultured in SABM Small Airway Epithelial Cell Growth Basal Medium (Cat# CC-3119). Cells were seeded into 6 well plates for the treatment of 2 ng/ml TGF-β with or without 20 μM GSK4112 (Cat#: 3663; TOCRIS) and SR8278 (Cat#: S9576 Sigma) for 2 days. Human Fetal Lung fibroblast (HFL-1, Cat#: CCL-153) and human bronchial epithelial (BEAS-2B, Cat#: CRL-9609) cells were purchased from the American Type Culture Collection (ATCC) and stored in liquid nitrogen. The cells were thawed and cultured in DMEM/F12K medium (Cat#:113-20033; Thermo Fisher Scientific) with 1% Penicillin-Streptomycin-Glutamine (Cat#: 103-78016; Thermo Fisher Scientific), and 10% FBS (Cat#: 10082147; Thermo Fisher Scientific) for HFL-1 and 1% Penicillin-Streptomycin-Glutamine, 5% FBS for BEAS-2B. Cells were maintained under 5% CO2 and 95% humidity. Before treatment, HFL-1 cells were starved in serum-free DMEM/F12K medium for 12 h, and BEAS-2B cells were serum-deprived in DMEM/F12K medium with 1% FBS. Then, the cells were treated with 2 ng/ml TGF-β with or without 20 μM GSK4112 (Cat#: 3663; TOCRIS) and SR8278 (Cat#: S9576 Sigma) for 2 days. After treatment, the cells were either lysed for protein/RNA quantification or fixed with 4% paraformaldehyde for immunofluorescence staining.
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Publication 2023
Bronchi BSC 1 Cell Growth Inhibitor Cells Cultured Cells Epithelial Cells Fetus Fibroblasts Glutamine GSK4112 Homo sapiens Humidity Immunofluorescence Lung Nitrogen paraform Penicillins Proteins Serum SR 8278 Streptomycin
After perfusion, the right bronchus was ligated and the right lung lobes were dissected and snap frozen for biochemical analysis. The left lung lobe was inflated with a formalin-agarose mixture [0.5% w/v low melting agarose in 1% neutral buffered formalin (NBF)] at a constant pressure of 20 cm H2O. The inflated lungs were fixed in 10% NBF for 48 h (16 (link)). The left lung lobe was blocked, embedded in paraffin, and sectioned. Formalin-fixed, paraffin-embedded lung sections were stained with hematoxylin and eosin (H&E) and Masson’s trichome for histological analysis. Immunohistochemical staining was performed using antibodies against phospho-SMAD3 (pSMAD3) (cat# ab52903, Abcam), activin A (cat# PA5-47004, ThermoFisher), and GDF11 (cat# NBP2-57399, Novus). Dual immunofluorescence staining was performed using combinations of antibodies against pSMAD3 (cat# ab52903, Abcam) and smooth muscle α-actin (cat# A5228, Sigma) or CD31 (cat# ab182981, Abcam). DAPI (4′,6-diamidino-2-phenylindole) was used to identify cell nuclei.
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Publication 2023
Actins activin A Antibodies Bronchi Cell Nucleus DAPI Eosin Fluorescent Antibody Technique Formalin Freezing GDF11 protein, human Lung Novus Paraffin Paraffin Embedding Perfusion Pressure Sepharose SMAD3 protein, human Smooth Muscles Trichomes

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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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The BEAS-2B cell line is a human bronchial epithelial cell line derived from normal human bronchial epithelial cells. It is commonly used in cell biology research and drug discovery applications.
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DMEM (Dulbecco's Modified Eagle's Medium) is a cell culture medium formulated to support the growth and maintenance of a variety of cell types, including mammalian cells. It provides essential nutrients, amino acids, vitamins, and other components necessary for cell proliferation and survival in an in vitro environment.
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RPMI 1640 medium is a commonly used cell culture medium developed at Roswell Park Memorial Institute. It is a balanced salt solution that provides essential nutrients, vitamins, and amino acids to support the growth and maintenance of a variety of cell types in vitro.
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Penicillin/streptomycin is a commonly used antibiotic solution for cell culture applications. It contains a combination of penicillin and streptomycin, which are broad-spectrum antibiotics that inhibit the growth of both Gram-positive and Gram-negative bacteria.
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Streptomycin is a broad-spectrum antibiotic used in laboratory settings. It functions as a protein synthesis inhibitor, targeting the 30S subunit of bacterial ribosomes, which plays a crucial role in the translation of genetic information into proteins. Streptomycin is commonly used in microbiological research and applications that require selective inhibition of bacterial growth.
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Penicillin is a type of antibiotic used in laboratory settings. It is a broad-spectrum antimicrobial agent effective against a variety of bacteria. Penicillin functions by disrupting the bacterial cell wall, leading to cell death.
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RPMI 1640 is a common cell culture medium used for the in vitro cultivation of a variety of cells, including human and animal cells. It provides a balanced salt solution and a source of essential nutrients and growth factors to support cell growth and proliferation.
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BEGM is a basal medium developed for the in vitro culture of normal human bronchial epithelial cells. It provides the essential nutrients and growth factors required for the optimal growth and differentiation of these cells in culture.
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The H1299 is a cell line derived from a human non-small cell lung carcinoma. It is commonly used in biological research applications.

More about "Bronchi"

The bronchi are the primary airways in the lungs, branching off from the trachea and dividing into smaller bronchioles.
These vital structures play a crucial role in the respiratory system, facilitating the exchange of air between the external environment and the alveoli, where gas exchange takes place.
Optimizing bronchi research is essential for understanding lung function and developing effective treatments for respiratory conditions.
PubCompare.ai can help researchers locate the best protocols from scientific literature, preprints, and patents, using AI-driven comparisons to identify the most reproducible and accurate methods.
This can greatly improve the quality and impact of your bronchi-related studies.
When conducting bronchi research, it's important to consider the appropriate cell lines and culture media.
FBS (Fetal Bovine Serum) and BEAS-2B (human bronchial epithelial cells) are commonly used to study bronchial function and responses.
DMEM (Dulbecco's Modified Eagle Medium) and RPMI 1640 are popular culture media that provide the nutrients and growth factors necessary for cell proliferation and maintenance.
Additionally, the use of antibiotics like Penicillin/Streptomycin, Streptomycin, and Penicillin can help prevent bacterial contamination in cell cultures, ensuring the integrity of your experimental results.
RPMI 1640 and BEGM (Bronchial Epithelial Cell Growth Medium) are also widely used in bronchi-related research, as they are specifically formulated to support the growth and differentiation of bronchial epithelial cells.
For lung cancer research, the H1299 cell line, derived from a non-small cell lung carcinoma, is a commonly used model for studying the biology and treatment of this disease.
By incorporating these insights and optimizing your bronchi research with the help of PubCompare.ai, you can take your studies to new heights and contribute to advancements in respiratory health and disease.