Magnetic resonance imaging was performed at the UCSD Radiology Imaging Laboratory on a General Electric 1.5T EXCITE HD scanner with an 8-channel phased-array head coil. Image acquisitions included a conventional 3-plane localizer, GE calibration scan, two T1-weighted 3D structural scans (TE = 3.8ms, TR=10.7ms, TI = 1sec, flip angle= 8 deg, bandwidth=15.63 kHz, FOV=25.6 cm, matrix=192×192, slice thickness=1.0mm), and five diffusion-weighted (DW) sequences. Diffusion data were acquired using single-shot echo-planar imaging with isotropic 2.5 mm voxels (matrix size=96×96, FOV=24 cm, 47 axial slices, slice thickness=2.5 mm), covering the entire cerebrum and brainstem without gaps. Three volume series were acquired with 51 diffusion gradient directions using b-value of 600 mm2/s (TE/TR 68.4/10,900), 800 mm2/s (TE/TR 72.3/11,700), and 1,000 (TE/TR 75.6/12,300) mm2/s, each with an additional b=0 volume. For use in nonlinear B0 distortion correction, two additional series were acquired with opposite phase encoding polarity.
Cerebrum
The cerebrum is the largest and uppermost part of the brain, responsible for higher cognitive functions such as consciousness, perception, cognition, and motor control.
It is divided into two hemispheres, the left and right cerebral hemispheres, which are connected by a band of nerve fibers called the corpus callosum.
The cerebrum is composed of the cerebral cortex, which is the outer layer of gray matter, and the underlying white matter.
The cerebral cortex is further divided into lobes, each with specialized functions.
The cerebrum plays a key role in the complex processes of the central nervous system and is essential for the coordination and integration of various bodily functions.
Researchers can enhance the accuracy and reproducibility of their Cerebrum-related studies by utilizing PubCompare.ai's AI-driven protocol comparison tool, which helps identify the best protocols and prodcuts from literature, preprints, and patents to optimize their research workflow and analysis.
It is divided into two hemispheres, the left and right cerebral hemispheres, which are connected by a band of nerve fibers called the corpus callosum.
The cerebrum is composed of the cerebral cortex, which is the outer layer of gray matter, and the underlying white matter.
The cerebral cortex is further divided into lobes, each with specialized functions.
The cerebrum plays a key role in the complex processes of the central nervous system and is essential for the coordination and integration of various bodily functions.
Researchers can enhance the accuracy and reproducibility of their Cerebrum-related studies by utilizing PubCompare.ai's AI-driven protocol comparison tool, which helps identify the best protocols and prodcuts from literature, preprints, and patents to optimize their research workflow and analysis.
Most cited protocols related to «Cerebrum»
Brain Stem
Cerebrum
Diffusion
Electricity
Head
Radiography
Radionuclide Imaging
TR 700
Manual labeling at different scales was performed by a trained expert using ITK-SNAP software. Details of intracranial cavity mask and macrostructures (cerebrum, cerebellum, and brainstem) can be found in the corresponding original papers (Manjón et al., 2014 (link); Romero et al., 2015 (link)). Lateral ventricles and subcortical structures were manually segmented from scratch using ITK-SNAP software using the 3 orthogonal views to avoid any inconsistency in 3D. Lateral ventricles label were thresholded using a threshold of 100 over the intensity-normalized images to get a consistent label definition (note that choroid plexus was not included in our lateral ventricles definition). All subcortical structures were segmented according to the current common definition criteria with the exception of hippocampus that was segmented using EADC protocol (Frisoni and Jack, 2011 (link)).
We further increased the number of available priors in the library by flipping them along the mid-sagittal plane using the symmetric properties of the human brain. Therefore, a total number of 100 labeled training templates (original and flipped) have been created as done in BEaST paper (Eskildsen et al., 2012 (link)).
We further increased the number of available priors in the library by flipping them along the mid-sagittal plane using the symmetric properties of the human brain. Therefore, a total number of 100 labeled training templates (original and flipped) have been created as done in BEaST paper (Eskildsen et al., 2012 (link)).
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Brain
Brain Stem
Cerebellum
Cerebrum
Dental Caries
DNA Library
Homo sapiens
Plexus, Chorioid
Seahorses
Ventricle, Lateral
Biological Evolution
Blindness
Brain
Brain Stem
Cerebellum
Cerebrospinal Fluid
Cerebrum
Cortex, Cerebral
Dental Caries
Diagnosis
Gray Matter
Measure, Body
Mesencephalon
Radionuclide Imaging
Tissues
Ventricle, Lateral
Viverridae
White Matter
PBECs were prepared from 2–6-mo-old animals that had been injected with tamoxifen at the age of 5–6 wk in the case of genetically modified mice. Animals were sacrificed with CO2, and the cerebrum was isolated and dissected free of the meninges. The brain was homogenized in a Dounce homogenizer, and the resulting homogenate was centrifuged at 2,000 g for 7 min. The pellet was resuspended in 18% dextran solution (mol wt 60,000–90,000; Sigma-Aldrich) in DME-F12 (Invitrogen) and centrifuged at 7,840 g for 10 min. After removing the supernatant and myelin debris, the pellet was resuspended in DME (Invitrogen) containing 1 mg/ml collagenase/dispase (Roche), 40 µg/ml DNase 1 (Roche), and 0.147 µg/ml tosyllysine chloromethyl ketone (Sigma-Aldrich) and incubated at 37°C for 75 min with occasional agitation to free endothelial cells from pericytes, perivascular macrophages, and remains of the basement membrane. The cell suspension was centrifuged at 2,000 g for 7 min, the supernatant was discarded, and cells were washed and seeded in 6-well plates coated with mouse collagen IV (BD). Cells were grown in DME-F12 supplemented with 20% plasma-derived horse serum (First Link), 2 mM l -glutamine, 100 IU/ml penicillin, 100 µg/ml streptomycin, 0.25 µg/ml amphotericin B, 100 U/ml heparin (Braun), and 30 µg/ml of endothelial cell growth supplement (Sigma-Aldrich). 4 µg/ml puromycin (Sigma-Aldrich) was added for the first 48 h after preparation to deplete cells of nonendothelial origin. To prepare primary mixed cortical cultures, cortices of adult mice were dissected, homogenized, and digested with trypsin and DNase 1. Cells were grown in DME-F12 supplemented with 10% FCS, 100 IU/ml penicillin, 100 µg/ml streptomycin, and 0.5 mM l -glutamine. The mouse brain endothelial cell line bEnd.3 (American Type Culture Collection) was grown in DME containing 4.5 g/liter glucose, FCS (10%), 100 IU/ml penicillin, 100 µg/ml streptomycin, and 2 mM l -glutamine.
Adult
Amphotericin B
Animals
Brain
Cell Lines
Cells
Cerebrum
Collagenase
Collagen Type IV
Cortex, Cerebral
Decompression Sickness
Deoxyribonucleases
Dextran
dispase
Endothelial Cells
Endothelium
Equus caballus
Germ Cells
Glucose
Glutamine
Heparin
Kidney Cortex
Macrophage
Membrane, Basement
Meninges
Mus
Myelin
Penicillins
Pericytes
Plasma
Puromycin
Serum
Streptomycin
Tamoxifen
Tosyllysine Chloromethyl Ketone
Trypsin
Brain
Cells
Cerebellum
Cerebrum
Embryo
Lysine
Meninges
Mice, Transgenic
Mus
Neurons
Oligodendrocyte Precursor Cells
Platelet-Derived Growth Factor
Poly A
Pregnancy
Pregnant Women
Stem Cells
Tissues
Most recents protocols related to «Cerebrum»
We tested two types of statistical models to address our two questions, for each brain metric map (i.e. 7 maps in total): (1) Are there structural brain metrics that are associated with the ability to adopt asymmetry during the split-belt walking; and (2) Are there different brain-behavior relationships for younger and older adults? All models consisted of linear models with covariates constructed in SPM12 (estimated in CAT12 for surface metrics). Therefore we had a total of 14 separate models (7 brain metric maps x 2 questions) in which we tested for a correlation between each brain metric map and the gait parameters. The distinction between models for questions 1 and 2 was in the organization of the covariates of interest (i.e. the symmetry scores). For question 1, we tested for clusters in the brain maps that shared similar correlations across both age groups, and for question 2, we were interested in the interaction of age group and the gait parameter being tested. The symmetry scores included three gait parameters that inform us about ML balance control including (1) CoM, (2) Step-CoM, and (3) CoM-CoP. All symmetry scores were included in each of the models where the brain metric was the dependent variable. Age group and sex were used as covariates. Total intracranial volume was also used as a covariate for models that involved cerebrum gray matter and cerebellum volume34 . We re-estimated all models with the Threshold-Free Cluster Enhancement (TFCE; http://dbm.neuro.uni-650jena.de/tfce ) toolbox using the default 5,000 permutations52 (link). For each model, statistical significance was established at p<.05, after family-wise error (FWE) correction. Since we included all the gait metrics in each brain metric model, multiple comparisons across the gait metrics are accounted for, and the family-wise error correction corrects for multiple comparisons across brain voxels. Significant brain clusters were anatomically identified based on the appropriate atlas for that brain metric: the Automatic Anatomical Labeling (AAL3) atlas53 (link) for cerebrum gray matter, SUIT40 (link),41 (link) for cerebellum volume, DK4054 (link) for surface measures (cortical thickness, sulcal depth, fractal dimension, and gyrification), and JHU-ICBM tract atlas55 (link),56 (link) for fractional anisotropy.
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Aged
Age Groups
Anisotropy
Brain
Brain Mapping
Cerebellum
Cerebrum
Cortex, Cerebral
Gray Matter
Microtubule-Associated Proteins
Youth
Experiments with pig brains were permitted by the Health and Veterinary Office Münster (Reg.-No. 05 515 1052 21). Pig brain was obtained from a local butcher and separated into the following anatomical parcels: cerebrum, cerebellum, hypothalamus, and brain stem/spinal cord. Each tissue section was washed with distilled water, roughly cut into 10 × 10 × 10 mm pieces and homogenized using a blender (VDI 12, VWR International, Hannover, Germany). Homogenates were stored at − 20 °C. For adjustment of pH to 5–9, 0.5 M tris(hydroxymethyl)aminomethane (Tris-base, Serva, Heidelberg, Germany) buffer was prepared with hydrochloric acid (HCl, Honeywell Riedel–de Haen, Seelze, Germany). Reference tissue homogenates (RTHs) with controlled pH (pH-RTHs) were composed of RTHs and buffer (w/v), as displayed in supplementary Table S1 before spiking of PPIX. For the preparation of RTHs without pH control (pH ~ 7), 200 to 600 mg of the homogenates were directly spiked with PPIX (Enzo Life Sciences GmbH, Lörrach, Germany) stock solution (300 pmol/µl in dimethyl sulfoxide, Merck KGaA, Darmstadt, Germany) to the desired concentrations (0.0, 0.5, 0.75, 1.0, 2.0, 3.0 and 4.0 pmol/mg) and homogenized using a vortex mixer. RTHs and pH-RTHs were transferred to a Petri dish forming tissue samples of about 4 × 4 × 2 mm. Hyperspectral measurements were performed immediately using the same parameters as for tissue biopsies. The software calculated the PPIX contribution in µg/ml based on the calibration with liquid phantoms18 (link)–20 (link),25 (link)–28 (link). A unit related to the sample weight is superior and more common in solid tissue samples like homogenates or brain biopsies, because these samples are routinely weighed for analysis in the laboratory. Thus, we refer to pmol/mg for the spiked samples of homogenates experiments and evaluate them in relation to the calculated PPIX contribution from HI in µg/ml. All generated raw data analyzed during this study are included in the supplementary data file.
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Biopsy
Brain
Brain Stem
Buffers
Cerebellum
Cerebrum
Hydrochloric acid
Hyperostosis, Diffuse Idiopathic Skeletal
Hypothalamus
methylamine
PPIX
Spinal Cord
Sulfoxide, Dimethyl
Tissues
Tromethamine
Cerebrum and cerebellum ACh concentrations were measured by the colorimetric method using sandwich ELISA Kits (catalog #E4452, BioVision Inc.®) (catalog # ab287811) (Milpitas, CA, United States), and expressed as µmol/mg protein according to the manufacturer’s instructions.
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Cerebellum
Cerebrum
Colorimetry
Enzyme-Linked Immunosorbent Assay
Proteins
Pups of each mother (6–8) were randomly distributed over five experimental groups (10 pups each), and they were housed with their mother. Each experimental group was marked with different colors by spots on their back, and the marks were checked every other day. The study included rat pups of both sexes, starting with a ratio of 1:1 (5:5) in all groups.
Group 1: Pups were injected with saline (0.9%NaCl) (3 mL/kg, SC) parallel to VPA injection. Group 2: Pups were SC injected with VPA (300 mg/kg) to induce autism. Groups 3, 4, and 5: Pups were exposed to VPA (300 mg/kg, SC) with oral Cana at doses (5 mg/kg/day, 7.5 mg/kg/day, and 10 mg/kg/day) (Safhi et al., 2018 (link); Abdelrahman et al., 2019 (link)) for PD-21 and continued during behavioral tests until PD-23 in volumes (6 mL/kg, 8 mL/kg, and 10 mL/kg). The behavioral experiments started at PD-21 to PD-23. Cana was administered by gastric gavages. Cana was administered 30 min before each behavioral test (Eissa et al., 2018 (link)).
The open field (OF) test was carried out on PD-21, followed by the elevated plus-maze test (EPM) on PD-22. Social behavior tests were performed on PD-23 (Mony et al., 2016 (link); 2018 (link)). The pups were returned to the dams after completing all behavioral experiments (PD-23).
On PD-23, due to mortality, the number of each experimental group was 4 ± 1 for each sex except for the control group (no mortality). The ending number of pups was eight in all groups, except for the control group, which was 10. Rats were injected intraperitoneally with ketamine (80 mg/kg) (Salem et al., 2022 (link)) and sacrificed by cervical dislocation. Then brains were dissected out and washed with ice-cold saline. The cerebellum and cerebrum of each rat were isolated. Specimens from dissected brain tissues (cerebellum and cerebrum) were prepared for biochemical analysis (Eissa et al., 2018 (link)). One hemisphere of the cerebellum was fixed in neutral formalin for histopathological assessments (Samimi and Amin Edalatmanesh, 2016 ; Shona et al., 2018 (link)).
Group 1: Pups were injected with saline (0.9%NaCl) (3 mL/kg, SC) parallel to VPA injection. Group 2: Pups were SC injected with VPA (300 mg/kg) to induce autism. Groups 3, 4, and 5: Pups were exposed to VPA (300 mg/kg, SC) with oral Cana at doses (5 mg/kg/day, 7.5 mg/kg/day, and 10 mg/kg/day) (Safhi et al., 2018 (link); Abdelrahman et al., 2019 (link)) for PD-21 and continued during behavioral tests until PD-23 in volumes (6 mL/kg, 8 mL/kg, and 10 mL/kg). The behavioral experiments started at PD-21 to PD-23. Cana was administered by gastric gavages. Cana was administered 30 min before each behavioral test (Eissa et al., 2018 (link)).
The open field (OF) test was carried out on PD-21, followed by the elevated plus-maze test (EPM) on PD-22. Social behavior tests were performed on PD-23 (Mony et al., 2016 (link); 2018 (link)). The pups were returned to the dams after completing all behavioral experiments (PD-23).
On PD-23, due to mortality, the number of each experimental group was 4 ± 1 for each sex except for the control group (no mortality). The ending number of pups was eight in all groups, except for the control group, which was 10. Rats were injected intraperitoneally with ketamine (80 mg/kg) (Salem et al., 2022 (link)) and sacrificed by cervical dislocation. Then brains were dissected out and washed with ice-cold saline. The cerebellum and cerebrum of each rat were isolated. Specimens from dissected brain tissues (cerebellum and cerebrum) were prepared for biochemical analysis (Eissa et al., 2018 (link)). One hemisphere of the cerebellum was fixed in neutral formalin for histopathological assessments (Samimi and Amin Edalatmanesh, 2016 ; Shona et al., 2018 (link)).
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Autistic Disorder
Behavior Test
Brain
Cerebellum
Cerebrum
Common Cold
Elevated Plus Maze Test
Exanthema
Formalin
Joint Dislocations
Ketamine
Mothers
Neck
Normal Saline
Open Field Test
Saline Solution
Stomach
Tissues
Tube Feeding
To measure the gene expression of PPAR-γ, LDHA, PDK, and c-Myc in the rat cerebellum and cerebrum tissues, RNA was extracted using an RNA extraction kit (Thermo Scientific, Fermentas, #K0731) according to the manufacturer’s instructions. Using a Nanodrop NA-1000 UV/vis spectrophotometer (Thermo Fisher Scientific Inc., Wilmington, DE, United States), RNA purity and concentration were measured and then stored at −80°C. Messenger RNA (mRNA) transcript levels of PPAR-γ, LDHA, PDK, and c-Myc were quantified by real-time PCR using StepOne Plus™ Real-Time PCR thermal cycler (Applied Biosystems, Waltham, MA, United States). RT-qPCR was performed using GoTaq® 1-Step RT-qPCR System. Primers used are listed in Table 1 . The thermal PCR amplification protocol was as follows: 37°C for 15 min, 10 min at 95°C, followed by 40 cycles of 95°C for 10 s, 52°C for 30 s, and 72°C for 30 s. The generation of specific PCR products was confirmed through dissociation curve analysis. Threshold (Ct) values for each reaction were estimated. All the Ct values of the target genes were normalized to the Ct value of β-actin, which was used as a housekeeping gene.
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Actins
Cerebellum
Cerebrum
Gene Expression
Genes
Genes, Housekeeping
LDH 5
Oligonucleotide Primers
Oncogenes, myc
PPAR gamma
Real-Time Polymerase Chain Reaction
RNA, Messenger
Tissues
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More about "Cerebrum"
The cerebrum, also known as the forebrain or prosencephalon, is the largest and most complex part of the human brain.
It is responsible for a wide range of higher cognitive functions, including consciousness, perception, cognition, and motor control.
The cerebrum is divided into two hemispheres, the left and right cerebral hemispheres, which are connected by a bundle of nerve fibers called the corpus callosum.
The cerebral cortex, the outer layer of gray matter in the cerebrum, is further divided into specialized lobes, each with its own functions.
These include the frontal lobe (responsible for motor control and higher-order cognitive functions), the parietal lobe (involved in sensory processing and spatial awareness), the temporal lobe (associated with memory, language, and auditory processing), and the occipital lobe (responsible for visual processing).
The underlying white matter of the cerebrum is composed of myelinated nerve fibers that facilitate communication between different regions of the brain.
This intricate network of neural connections allows for the integration and coordination of various bodily functions.
Researchers studying the cerebrum can enhance the accuracy and reproducibility of their work by utilizing PubCompare.ai's AI-driven protocol comparison tool.
This powerful resource helps identify the best protocols and products from literature, preprints, and patents, optimizing the research workflow and analysis.
Additionally, techniques like TRIzol reagent, RNeasy Mini Kit, and RNeasy Lipid Tissue Mini Kit can be employed for RNA extraction and purification, while whole-body MRI scanners can provide detailed anatomical and functional insights into the cerebrum.
Other relevant tools and reagents, such as HBSS, Immunocal™ Decalcifier, DMEM, and the Agilent 2100 Bioanalyzer, can also be useful in cerebrum-related studies.
By leveraging these resources and insights, researchers can enhance the accuracy, reproducibility, and overall quality of their investigations into this complex and fascinating part of the human brain.
It is responsible for a wide range of higher cognitive functions, including consciousness, perception, cognition, and motor control.
The cerebrum is divided into two hemispheres, the left and right cerebral hemispheres, which are connected by a bundle of nerve fibers called the corpus callosum.
The cerebral cortex, the outer layer of gray matter in the cerebrum, is further divided into specialized lobes, each with its own functions.
These include the frontal lobe (responsible for motor control and higher-order cognitive functions), the parietal lobe (involved in sensory processing and spatial awareness), the temporal lobe (associated with memory, language, and auditory processing), and the occipital lobe (responsible for visual processing).
The underlying white matter of the cerebrum is composed of myelinated nerve fibers that facilitate communication between different regions of the brain.
This intricate network of neural connections allows for the integration and coordination of various bodily functions.
Researchers studying the cerebrum can enhance the accuracy and reproducibility of their work by utilizing PubCompare.ai's AI-driven protocol comparison tool.
This powerful resource helps identify the best protocols and products from literature, preprints, and patents, optimizing the research workflow and analysis.
Additionally, techniques like TRIzol reagent, RNeasy Mini Kit, and RNeasy Lipid Tissue Mini Kit can be employed for RNA extraction and purification, while whole-body MRI scanners can provide detailed anatomical and functional insights into the cerebrum.
Other relevant tools and reagents, such as HBSS, Immunocal™ Decalcifier, DMEM, and the Agilent 2100 Bioanalyzer, can also be useful in cerebrum-related studies.
By leveraging these resources and insights, researchers can enhance the accuracy, reproducibility, and overall quality of their investigations into this complex and fascinating part of the human brain.