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Ovary

The ovary is a female reproductive organ that produces eggs (ova) and the hormones estrogen and progesterone.
It is part of the female reproductive system and is located in the pelvic cavity, one on each side of the uterus.
The ovary plays a crucial role in the menstrual cycle and fertility.
It contains follicles that develop and release a mature egg during ovulation.
Ovarian function can be affected by various factors, including age, hormonal imbalances, and certain medical conditions.
Understanding the anatomy and physiology of the ovary is essential for research and treatment of ovarian-related disorders, such as polycystic ovary syndrome, ovarian cancer, and infertility.
The PubCompare.ai platform can help researchers optimize their ovary studies by providing AI-driven comparisons of protocols, products, and research across literature, preprints, and patents, enhancing reproducibility and accuarcy.

Most cited protocols related to «Ovary»

The proteomics data used in the case study were obtained from a phosphoproteomics study of ovarian cancer13 (link) (specifically Supplementary Table 3 of the study). The list of proteins used to retrieve the network was extracted from the significantly regulated phosphorylation sites listed in this table. Furthermore, log-ratios of abundance in disease versus healthy tissues were computed based on the average abundance values over the samples listed in the same table. To facilitate the subsequent visualization in Cytoscape, we also modified the Supplementary Table 3 by keeping only the significantly regulated phosphorylation sites and sorting them by significance. This modified version of the table, which was imported into Cytoscape, is provided as Table S1.
During import of the associated log-ratios and phosphorylation cluster assignments, the most significant phosphorylation site was chosen whenever multiple sites were found on the same protein (by first sorting the table based on “Gene name” and then on “adj. p-value”).
All analyses were performed on the 12th of April 2018 using Cytoscape version 3.6.1 and stringApp version 1.3.2 and are provided in a Cytoscape session (https://doi.org/10.6084/m9.figshare.7258235). Additionally, we used clusterMaker2 version 1.2.1 to perform Markov clustering (MCL)14 (link) of the protein network and EnhancedGraphics version 1.2.015 (link) to enable stringApp visualization of enriched terms as circular plots onto the network nodes.
Publication 2018
Genes Ovary Phosphorylation Proteins Tissues
Results are based in part upon data generated by TCGA Research Network (http://cancergenome.nih.gov/). We aggregated TCGA transcriptomic and RPPA data from public repositories, listed in the “Data availability” section. RNA-seq expression data were processed by TCGA at the gene level, rather than at the transcript level. Tumors spanned 32 different TCGA projects, each project representing a specific cancer type, listed as follows: LAML, acute myeloid leukemia; ACC, adrenocortical carcinoma; BLCA, bladder urothelial carcinoma; LGG, lower grade glioma; BRCA, breast invasive carcinoma; CESC, cervical squamous cell carcinoma and endocervical adenocarcinoma; CHOL, cholangiocarcinoma; CRC, colorectal adenocarcinoma (combining COAD and READ projects); ESCA, esophageal carcinoma; GBM, glioblastoma multiforme; HNSC, head and neck squamous cell carcinoma; KICH, kidney chromophobe; KIRC, kidney renal clear cell carcinoma; KIRP, kidney renal papillary cell carcinoma; LIHC, liver hepatocellular carcinoma; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; DLBC, lymphoid neoplasm diffuse large B-cell lymphoma; MESO, mesothelioma; OV, ovarian serous cystadenocarcinoma; PAAD, pancreatic adenocarcinoma; PCPG, pheochromocytoma and paraganglioma; PRAD, prostate adenocarcinoma; SARC, sarcoma; SKCM, skin cutaneous melanoma; STAD, stomach adenocarcinoma; TGCT, testicular germ cell tumors; THYM, thymoma; THCA, thyroid carcinoma; UCS, uterine carcinosarcoma; UCEC, uterine corpus endometrial carcinoma; UVM, uveal melanoma. Cancer molecular profiling data were generated through informed consent as part of previously published studies and analyzed per each original study’s data use guidelines and restrictions.
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Publication 2019
4-carboxyphenylglyoxal Adenocarcinoma Adenocarcinoma of Lung Adrenocortical Carcinoma Breast Carcinoma Carcinoma, Thyroid Carcinoma, Transitional Cell Carcinosarcoma Cells Cholangiocarcinoma Chromophobia Chronic Obstructive Airway Disease Diffuse Large B-Cell Lymphoma Endocervix Endometrial Carcinoma Esophageal Cancer Familial Atypical Mole-Malignant Melanoma Syndrome Gene Expression Profiling Genes Glioblastoma Multiforme Glioma Hepatocellular Carcinomas Hypernephroid Carcinomas Kidney Leukemia, Myelocytic, Acute Lung Lymph Malignant Neoplasms Mesothelioma Neck Neoplasms Ovary Pancreas Paraganglioma Pheochromocytoma Prostate Renal Cell Carcinoma RNA-Seq Sarcoma Serous Cystadenocarcinoma Squamous Cell Carcinoma Squamous Cell Carcinoma of the Head and Neck Stomach Testicular Germ Cell Tumor Thymoma Urinary Bladder Uterus Uveal melanoma X-Ray Photoelectron Spectroscopy
We extracted 33 pyroptosis-related genes from prior reviews17 (link)–20 (link), and they are presented in Table S1. Due to the lack of normal ovarian tissue data in the TCGA cohort, we also considered GTEx data from 88 normal ovarian samples to identify the DEGs between normal and tumour tissues. The expression data in both datasets were normalized to fragment per kilobase million (FPKM) values before comparison. The “limma” package was used to identify DEGs with a P value <0.05. The DEGs are notated as follows: * if P < 0.05, ** if P < 0.01, and *** if P < 0.001. A PPI network for the DEGs was constructed with Search Tool for the Retrieval of Interacting Genes (STRING), version 11.0 (https://string-db.org/).
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Publication 2021
Genes Neoplasms Ovary Pyroptosis Tissues
Quantitative PCR (qPCR) was performed to characterize the relative Wolbachia infection level in the S2 cell lines and flies. The protocol was similar to prior qPCR amplification using the single-copy wsp and su(fk)C genes of bacterial and host origin, respectively [65 (link)]. S2 cells were quantified using a hemocytometer to obtain 106 cells. The S2 cells or DSR females were homogenized in 100 μl STE with 0.4 mg/ml proteinase K to extract DNA as previously described [66 (link)].
For qRT-PCR, RNA extractions were performed on groups of 10 ovaries or 10 testes dissected from one-day post eclosion infected and uninfected Drosophila adults using the RNeasy Mini Kit (Qiagen). DNA contamination was removed with RNase-Free DNase Set (Qiagen). RNA quality and quantity was checked with NanoDrop ND-100 spectrophotometer (NanoDrop Technologies, Inc.). Synthesis of cDNA was performed with Superscript II Reverse Transcriptase (Invitrogen) using specific primer for Ance (AnceQ F 5'-CGGTCACGTTCGATTGGTTG-3' and AnceQ R 5'-CTTCGGTTTCCACGTTGGTTC-3') and Actin gene (ActinQ F 5'-GCTGACCGTATGCAAAAGG-3' and ActinQ R 5'-GCTTGGAGATCCACATCTG-3'). Primers were designed based upon D. simulans genbank sequences for Ance and Actin (genbank accession number: NM_057696 and NM_079486, respectively]. qRT-PCR was performed separately with the AnceQ F/R and ActinQ F/R primer pairs using a Miniopticon system (BioRad) with a Platinum SYBR Green qPCR superMix (Invitrogen). qRT-PCR reactions were conducted using a 2 minute step at 50°C, 2 minute step at 95°C and 40 cycles of 15 seconds at 95°C and 30 seconds at 56°C. A fluorescence measurement was made at the end of each cycle. A melting curve analysis was performed at the end of the amplification program to examine for primer-dimers or nonspecific amplification. Assays were performed on two (D. simulans and D. melanogaster wild type) or three (D. melanogaster Ance mutants) independent experiment replicates for each sex and infection type. As an examination for variability, duplicate qRT-PCR reactions were performed for each set of ovaries or testes with both the Ance and Actin primers. Relative expression of Ance gene was calibrated against Actin using the ΔΔCT calculation method [67 (link)] with:

Expression variation=2ΔΔCT
For comparisons of males and females, the above was modified as follows:

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Publication 2008
A(2)C Actins Adult Anabolism Base Sequence Biological Assay Cells Deoxyribonucleases Diptera DNA, Complementary DNA Contamination Drosophila Drosophila melanogaster Endopeptidase K Endoribonucleases Females Fluorescence Gene Expression Genes Genes, Bacterial Infection Males Neoplasm Metastasis Oligonucleotide Primers Ovary Platinum RNA-Directed DNA Polymerase SYBR Green I Testis Wolbachia
STRAW+10 involved a 2-day, in-person meeting hosted at the 2011 Annual Meeting of NAMS. On the first day, international experts gave oral presentations reviewing recent data bearing on the goals, as part of a public symposium, followed by comments and discussion from the audience. The first two sessions focused on data from prospective cohort studies of midlife women, clinical findings related to trajectories of change in menstrual, endocrine and ovarian markers of reproductive aging, and data relevant to how these trajectories vary by ethnicity, body size, and smoking status. A particular focus was on patterns of change in AMH, inhibin B, FSH, estradiol and AFC and their inter-relationships. A third session focused on emerging evidence related to staging reproductive aging in the context of cancer treatment, chronic illness including cancer and HIV-AIDS, and endocrine disorders including polycystic ovarian syndrome (PCOS) and primary ovarian insufficiency (POI, otherwise known as premature ovarian failure). At the end of day one, a panel reviewed and participants discussed modifications that had been proposed by symposium speakers. STRAW+10 explicitly considered feasibility of applying criteria in low resource countries.
Subsequently, 41 invited scientists convened to develop consensus and propose modifications to the STRAW model. These participants had clinical and/or research experience in female reproductive aging and included scientists from several key research groups in the United States, Canada, Australia, the Netherlands and South Africa, representatives from the NIH funded cohort studies of midlife women that have biological samples60 (link) including SWAN, the Michigan Bone Health and Metabolism Study (MBHMS), SMWHS, Biodemographic Models of Reproductive Aging (BIMORA), and the Penn Ovarian Aging Study (POAS) as well as the Australian MWMHP, as well as junior investigators who submitted qualifying posters.
Three breakout groups were formed based on scientific expertise and interest. Group 1 reviewed criteria for STRAW Stages −4 to −2. Group 2 reviewed criteria for STRAW Stages −1 to +2. Each of these two groups was subdivided into two subgroups and assigned a rapporteur. Each subgroup proposed modifications to the STRAW paradigm separately, considering criteria for the relevant stages in healthy women and the weight of evidence concerning the appropriateness of applying these criteria to smokers and women regardless of body size. Each subgroup of Group 1 and of Group 2 then reviewed the recommendations of their paired subgroup and discussed points of disagreement until consensus was reached. Group 3 discussed staging in the context of endocrine disorders and chronic illness and proposed modifications. This group then integrated with one of the Group 1 or Group 2 subgroups.
On the second day, the 41 scientists convened to review and discuss proposed modifications. First, Group 1 and Group 2 reviewed the other group’s recommendations proposed on the previous day. In this way, all groups reviewed all stages under consideration (Stages −4 to +2) Then, the group at-large met to discuss each proposal and final recommendations were adopted by consensus. Preliminary recommendations of the STRAW+10 Workshop were presented at the NAMS annual meeting on September 22 with comments and requests for clarification considered by the STRAW+10 program committee.
Publication 2012
Acquired Immunodeficiency Syndrome Biopharmaceuticals Body Size Bones Conferences Disease, Chronic Endocrine System Diseases Estradiol Ethnicity Females inhibin B Malignant Neoplasms Menstruation Metabolism Native American myopathy Ovarian Failure, Premature Ovary Polycystic Ovary Syndrome Reproduction Signs and Symptoms System, Endocrine Woman

Most recents protocols related to «Ovary»

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Example 21

There is growing evidence that bisphenol A (BPA) may adversely affect humans. BPA is an endocrine disruptor that has been shown to be harmful in laboratory animal studies. As reported by Rochester J (Reproductive Toxicology, 2013) BPA has been shown to affect many endpoints of fertility, including poor ovarian response, viability of oocytes, and reduced yield of viable oocytes. BPA has also been correlated with PCOS, endometrial disorders, an increased rate of miscarriages, premature delivery, and lower birth weights.

Current methods of detecting BPA in blood are done through mass spectrometry. Monitoring of BPA levels in blood may help reduce or eliminate certain sources of BPA in a women's environment, aiding in overall health.

In some embodiments the disclosed device focuses on detecting levels of BPA toxin from menstrual blood or cervicovaginal fluid.

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Patent 2024
Animals, Laboratory bisphenol A BLOOD Endocrine Disruptors Endometrial Diseases Fertility Homo sapiens Mass Spectrometry Medical Devices Menstruation Miscarriage Oocytes Ovary Polycystic Ovary Syndrome Premature Birth Reproduction Toxic Substances, Environmental Toxins, Biological
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Example 2

For Western blot analysis 20 μg of total protein extracted from cells lyzed with Laemmli-lysis buffer was used. Extracts were diluted in reducing sample buffer (Roth), subjected to SDS-PAGE and subsequently electrotransferred onto PVDF membrane (Pall). Immunostaining was performed with polyclonal antibodies reactive to CLDN6 (ARP) and beta-Actin (Abcam) followed by detection of primary antibodies with horseradish-peroxidase conjugated goat anti-mouse and goat anti-rabbit secondary antibodies (Dako).

Tissue lysates from up to five individuals were tested for each normal tissue type. No CLDN6 protein expression was detected in any of the normal tissues analyzed. In contrast to normal tissues, high expression of CLDN6 protein was detected in samples from ovarian cancer and lung cancer. CLDN6 expression was detected in NIH-OVCAR3 (ovarian cancer), MKN7 (gastric cancer), AGS (gastric cancer), CPC-N (SCLC), HCT-116 (colon cancer), FU97 (gastric cancer), NEC8 (testicular embryonal carcinoma), JAR (placental choriocarcinoma), JEG3 (placental choriocarcinoma), BEWO (placental choriocarcinoma), and PA-1 (ovarian teratocarcinoma).

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Patent 2024
Anti-Antibodies Antibodies beta-Actin Buffers Cancer of Colon Cell Lines Choriocarcinoma CLDN6 protein, human Embryonal Carcinoma Gastric Cancer Goat Histocompatibility Testing Horseradish Peroxidase Laemmli buffer Lung Cancer Malignant Neoplasms Mus Ovarian Cancer Ovary Placenta polyvinylidene fluoride Proteins Rabbits SDS-PAGE Small Cell Lung Carcinoma Teratocarcinoma Testis Tissue, Membrane Tissues Western Blot
Not available on PMC !

Example 2

For Western blot analysis 20 μg of total protein extracted from cells lyzed with Laemmli-lysis buffer was used. Extracts were diluted in reducing sample buffer (Roth), subjected to SDS-PAGE and subsequently electrotransferred onto PVDF membrane (Pall). Immunostaining was performed with polyclonal antibodies reactive to CLDN6 (ARP) and beta-Actin (Abcam) followed by detection of primary antibodies with horseradish-peroxidase conjugated goat anti-mouse and goat anti-rabbit secondary antibodies (Dako).

Tissue lysates from up to five individuals were tested for each normal tissue type. No CLDN6 protein expression was detected in any of the normal tissues analyzed. In contrast to normal tissues, high expression of CLDN6 protein was detected in samples from ovarian cancer and lung cancer. CLDN6 expression was detected in NIH-OVCAR3 (ovarian cancer), MKN7 (gastric cancer), AGS (gastric cancer), CPC-N(SCLC), HCT-116 (colon cancer), FU97 (gastric cancer), NEC8 (testicular embryonal carcinoma), JAR (placental choriocarcinoma), JEG3 (placental choriocarcinoma), BEWO (placental choriocarcinoma), and PA-1 (ovarian teratocarcinoma).

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Patent 2024
Anti-Antibodies Antibodies beta-Actin Buffers Cancer of Colon Cell Lines Choriocarcinoma CLDN6 protein, human Embryonal Carcinoma Gastric Cancer Goat Histocompatibility Testing Horseradish Peroxidase Laemmli buffer Lung Cancer Malignant Neoplasms Mus Ovarian Cancer Ovary Placenta polyvinylidene fluoride Proteins Rabbits SDS-PAGE Small Cell Lung Carcinoma Teratocarcinoma Testis Tissue, Membrane Tissues Western Blot
Clinical information of patients, including age, body mass index, TNM stage, tumor location, pathological differentiation, lymph node metastasis, nerve invasion, vascular invasion, RAS status, and BRAF status, was retrospectively collected from medical records. Follow-up was carried out via telephone or by returning to the hospital for examination. The last follow-up was on July 12, 2021. Any metastasis with an interval of more than 3 months between the diagnosis of primary tumor (PT) and ovarian metastasis was defined as metachronous; otherwise, it was considered synchronous metastasis. The time from patients receiving first-line antitumor treatment to death from any cause was overall survival (OS), whereas the time of tumor progression, death from any cause, or time to receiving second-line treatment was progression-free survival (PFS). The Ethics Committee of Guangxi Medical University Cancer Hospital approved our study (LW2021078).
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Publication 2023
Blood Vessel BRAF protein, human Diagnosis Disease Progression Ethics Committees, Clinical Index, Body Mass Lymph Node Metastasis Malignant Neoplasms Neoplasms Neoplasms by Site Nervousness Ovary Patients
Paraffin specimens, including PTs, KTs, and contralateral “normal ovary” tissues that underwent prophylactic excision, were collected from the Pathology Department of Guangxi Medical University Cancer Hospital. After sampling, dehydration, embedding, and 4-μm thick sectioning, blank slides were made. Sections stained with hematoxylin and eosin (HE) were evaluated by an experienced pathologist.
Immunohistochemistry was performed using the ready-to-use fast immunohistochemistry MaxVisionTM2 assay kit (KIT-5920, MXB Biotechnologles, China). Specimens were first dewaxed, dehydrated, and repaired in a microwave for 15 min using EDTA (pH = 9.0). Each tissue specimen was then incubated with the following antibodies at 4°C overnight: CDX-2 (clone EPR2764Y, diluted 1:200, Abcam, USA), CD68 (clone BP6036, diluted 1:400, Biolynx, China), CD163 (clone BX50058, diluted 1:50, Biolynx), and CD11c (clone 2F1C10, diluted 1:4500, Proteintech, USA). DAB staining was performed by incubating at room temperature for 30 min using the secondary antibody contained in the kit.
Cells with yellowish brown or brownish yellow granules in the nucleus or cytoplasm were positive cells. First, sections were evaluated as a whole under low magnification field of vision and the areas with the highest positive TAM density were selected for detailed observation. Next, the tumor nests (TN), tumor stroma (TS), and invasive margin (IM) were quantified under high magnification according to the evaluation method by Gill et al. (26 (link)). Scoring was performed as follows: none/sporadic = 1; moderate = 2; abundant = 3; highly abundant = 4, from which a total score was obtained. The different grade scoring standards of CD68+ TAMs in TS and PT are shown in Figure 1. All pathological sections were analyzed and interpreted by two senior pathologists in a double-blinded manner.
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Publication 2023
Antibodies Biological Assay CD163 protein, human Cell Nucleus Cells Clone Cells Condoms Cytoplasm Cytoplasmic Granules Edetic Acid Eosin Gills Immunoglobulins Immunohistochemistry Malignant Neoplasms Microwaves Myeloproliferative Syndrome, Transient Neoplasms Ovary Paraffin Pathologists Tissues

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SKOV3 is a cell line derived from a human ovarian adenocarcinoma. It is commonly used in scientific research as a model for the study of ovarian cancer.
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More about "Ovary"

The ovary is a vital component of the female reproductive system, responsible for producing eggs (ova) and the crucial hormones estrogen and progesterone.
This pelvic organ, situated on each side of the uterus, plays a central role in the menstrual cycle and fertility.
The ovary contains follicles that develop and release a mature egg during the process of ovulation.
Understanding the anatomy and physiology of the ovary is essential for research and treatment of various ovarian-related disorders, such as polycystic ovary syndrome (PCOS), ovarian cancer, and infertility.
When conducting ovary-related research, researchers may utilize a variety of laboratory techniques and reagents, such as FBS (Fetal Bovine Serum) for cell culture, TRIzol reagent for RNA extraction, and SKOV3 cell line for ovarian cancer studies.
Additionally, common cell culture media like DMEM (Dulbecco's Modified Eagle Medium) and RPMI 1640 medium may be employed, along with antibiotics like Penicillin and Streptomycin to prevent bacterial contamination.
The RNeasy Mini Kit is a popular tool for the purification of high-quality RNA from various sample types, including ovarian tissues.
The PubCompare.ai platform can be a valuable resource for researchers studying the ovary, as it provides AI-driven comparisons of protocols, products, and research across literature, preprints, and patents.
This can help optimize ovary studies by enhancing reproducibility and accuracy, ensuring more effective and efficient research outcomes.