Cell Wall
It provides structural support, protects the cell from mechanical stress, and regulates the passage of molecules in and out of the cell.
The cell wall is composed of various polysaccharides, such as cellulose, chitin, and peptidoglycan, depending on the organism.
It plays a crucial role in cell shape, growth, and division, as well as in plant adaptations to the environment.
Understaning the structure and function of the cell wall is essential for research in areas like plant biology, microbiology, and biotechnology.
Most cited protocols related to «Cell Wall»
the same as those elaborated in [13] (link); the only differences are as follows.
Swiss-Prot database, the version 55.3 released on 29-Apr-2008 was adopted.
having two or more location sites, the multiplex proteins are no longer excluded in this
study. Actually, according to a statistical analysis on the current database, about
8% of plant proteins were found located in more than one location.
After strictly following the aforementioned procedures, we finally obtained a benchmark
dataset containing 978 different protein sequences, which are distributed
among 12 subcellular locations (
theory. A breakdown of the 978 plant proteins in the benchmark dataset according to their 12 location sites is given in
corresponding accession numbers and protein sequences are given in
Since some proteins in may occur in two or more locations, it is instructive to introduce the
concept of “locative protein” [23] (link), as briefed as follows. A
protein coexisting at two different location sites will be counted as 2 locative
proteins even though the two are with completely the same sequence; if
coexisting at three sites, 3 locative proteins; and so forth. Thus, it follows where is the number of total locative proteins, the number of total different protein sequences, the number of proteins with one location, the number of proteins with two locations, and so forth;
while is the number of total subcellular location sites concerned (for the
current case, as shown in
For the current 978 different protein sequences, 904 occur in one subcellular location,
71 in two locations, 3 in three locations, and none in four or more locations.
Substituting these data into Eq.2, we have which is fully consistent with the figures in
To develop a powerful method for predicting protein subcellular localization, it is very
important to formulate the sample of a protein in terms of the core features that are
intrinsically correlated with its localization in a cell. To realize this, the strategy
by integrating the GO representation and PseAAC representation was adopted in the
original Plant-PLoc [13] (link). In this study, the essence of such a strategy will be
still kept. However, in order to overcome the four shortcomings as mentioned in
combination approach has been developed, as described below.
A segmented mesh contains information about the cells neighborhood, that is, which are the cell walls shared by two cells and where do the cell walls intersect. The mesh can be simplified to contain only vertices necessary to describe each cell contour and the connections between neighbor cells (
The cellular mesh can also be used to compute other quantities, such as the tissue curvature (
Most recents protocols related to «Cell Wall»
Example 1
Lys68 is a globular endolysin, i.e. does not exhibit an apparent domain structure with an enzymatic domain and a cell wall binding domain, as encountered for various other endolysins. The inventor hypothesized, that Lys68 endolysin may nonetheless exhibit a core region responsible for enzymatic activity and tested this hypothesis with truncated versions of Lys68, namely Lys68(1-132) (SEQ ID NO:32), Lys68(1-148) (SEQ ID NO:33) and Lys68(7-162) (SEQ ID NO:34).
Briefly, the following experiment was carried out: Exponentially growing P. aeruginosa cells were harvested by centrifugation and subsequently resuspended in 0.05 M Tris/HCl pH 7.7 buffer saturated with chloroform. This cell suspension was incubated for 45 minutes at room temperature. Afterwards, cells were washed with 20 mM HEPES pH 7.4 and finally adjusted to an OD600 of ca. 1.5 with 20 mM HEPES pH 7.4. In order to test the muralytic activity, 270 μl of chloroform treated cells were mixed with 30 μl of purified variants of Lys68 in a 96 well plate and the OD600 was monitored in a microplate reader.
The result is shown in
To characterize the ultrastructure of VZ proliferative cells and their derivatives, the brains of specimens with 1.5, 6, 12, 24, and 72 h survival times were examined. Between 50 and 150 [3H]-thymidine-positive ([3H]-thy+) cells were analyzed for each survival time, including at least two different antero-posterior levels per lizard. These cells were studied by transmission electron microscopy (TEM) to determine their ultrastructural characteristics. Counts were also made of the number of cells in mitosis (M phase) labeled relative to the total number of [3H]-thy+ cells.
The analysis of specimens with long survival times (1, 3, 6, and 12 months) focused mainly on the cell layer of the MC, although we also investigated whether there were labeled cells in the walls of the LVs. Within the MC we analyzed the ultrastructure of 25–50 [3H]-thy+ cells from each survival time to see to which neuronal type they corresponded.
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More about "Cell Wall"
It is a rigid, semi-permeable layer that surrounds the cell membrane, providing structural support, protection from mechanical stress, and regulating the passage of molecules in and out of the cell.
The cell wall is composed of various polysaccharides, such as cellulose, chitin, and peptidoglycan, depending on the organism.
Understanding the structure and function of the cell wall is essential for research in areas like plant biology, microbiology, and biotechnology.
Techniques like Calcofluor white, Propidium iodide, Mutanolysin, Congo red, Lysozyme, Liticase, and Sorbitol can be used to study the cell wall.
Imaging tools like the LSM 880 confocal microscope can also be used to visualize and analyze the cell wall.
The cell wall plays a key role in cell shape, growth, and division, as well as in plant adaptations to the environment.
It is a fasinating and complex structure that continues to be an important area of study for researchers.
By utilizing the latest tools and techniques, such as those provided by PubCompare.ai, scientists can optimize their cell wall research and make data-driven decisions to advance our understanding of this critical cellular component.