This assay was adapted from the Smart-seq2 protocol54 (link). Single cells were sorted by flow cytometry into 96-well PCR plates containing 4 µl cell lysis buffer with RNAase inhibitor (Takara). The sort stream was adjusted carefully to ensure that the cells landed in the liquid interface. RNA loss was minimized by performing on-plate RNA extraction, reverse-transcription and whole transcriptome pre-amplification to generate ~1–10 ng of cDNA. Given that primary iNKT cells express much lower amounts of RNA per cell (0.3–1 pg) than do the cell lines that were used in the published protocol54 (link) (~10 pg/cell), we increased the concentration of primers used (0.1 µM) and the number of PCR cycles for pre-amplification (22 cycles) so that an adequate amount of cDNA was generated without primer dimers and also to avoid over-amplification. Multiple quality-control steps were introduced to ensure that consistency was maintained during the procedure for all samples. Samples that failed quality-control steps as described54 (link), were eliminated from further downstream steps and analysis. Standard qPCR was performed for housekeeping genes to ensure comparable amplification of all single-cell samples. Barcoded Illumina sequencing libraries (Nextera XT library preparation kit, Illumina) were generated using the automated platform (Biomek FXp). Libraries were sequenced on the HiSeq2500 Illumina platform to obtain 50-bp single end reads (TruSeq® Rapid Kit, Illumina).
Invariant Natural Killer T-Cells
Invariant Natural Killer T-Cells (iNKT cells) are a unique subset of T lymphocytes that express a semi-invariant T cell receptor and recognize lipid antigens presented by the MHC class I-like molecule CD1d.
These cells play a critical role in regulating immune responses and have been implicated in a variety of diseases, including autoimmunity, cancer, and infectious disorders.
The PubCompare.ai platform leverages cutting-edge AI technology to help researchers discover the latest research on iNKT cells, locate protocols from literature, preprints, and patents, and identify the best protocols and products for their work.
This tool can improve reproducibility and accruacy, enabling researchers to experience the future of research today.
These cells play a critical role in regulating immune responses and have been implicated in a variety of diseases, including autoimmunity, cancer, and infectious disorders.
The PubCompare.ai platform leverages cutting-edge AI technology to help researchers discover the latest research on iNKT cells, locate protocols from literature, preprints, and patents, and identify the best protocols and products for their work.
This tool can improve reproducibility and accruacy, enabling researchers to experience the future of research today.
Most cited protocols related to «Invariant Natural Killer T-Cells»
2-5A-dependent ribonuclease
Biological Assay
Buffers
cDNA Library
Cell Lines
Cells
DNA, Complementary
Flow Cytometry
Genes, Housekeeping
Invariant Natural Killer T-Cells
Oligonucleotide Primers
Reverse Transcription
Transcriptome
In all experiments, lungs were aseptically removed, minced using sterile razor blades, and incubated in 1.6 mg/ml collagenase (CLS4, Worthington Biochemicals, Lakewood, NJ) and 30 µg/ml DNAse (Sigma-Aldrich, St. Louis, MI) at 37°C for 90 min. To achieve a single-cell suspension, lung fragments were pressed through a 70-µm pore nylon cell strainer using the flat end of a sterile 3-ml syringe plunger. Enzymatic action was terminated by washing cells twice in complete RPMI (RPMI 1640 with L-glutamine and 10% fetal bovine serum (FBS)) by centrifugation at 400× g for 5 min at 4°C. Leukocytes were isolated by centrifugation over a 30–70% Percoll gradient (GE Healthcare, Piscataway, NJ). Cells were then pre-incubated for 30 min. with normal rat serum, and washed before staining. iNKT cells were identified using various antibody combinations that included PE conjugated CD1d: PBS-57 loaded tetramer (NIH, NIAID tetramer core facility, Atlanta GA), TCRβ-allophycocyanin (APC) (clone H57-597, eBioscience, San Diego, CA) and CD4-APC-eFluor750 (clone RM4-5) (eBioscience). Cells were acquired on the FACSCanto II 8 color flow cytometer (BD Biosciences, San Jose, CA) and 10,000 events within the iNKT cell gate were collected. The data were analysed with FlowJo 8.6 software (Tree Star Inc., Ashland, OR).
allophycocyanin
Antigen T Cell Receptor, beta Chain
CD1D protein, human
Cells
Centrifugation
Clone Cells
Collagenase
collagenase 1
Deoxyribonucleases
enzyme activity
Fetal Bovine Serum
Glutamine
Immunoglobulins
Invariant Natural Killer T-Cells
Leukocytes
Lung
Nylons
PBS 57
Percoll
Serum
Sterility, Reproductive
Syringes
Tetrameres
Trees
Biological Processes
Cells
Chromatin Immunoprecipitation Sequencing
Dietary Fiber
DNA Library
Exons
Gene Annotation
Gene Expression
Genes
Genes, vif
Genome
Invariant Natural Killer T-Cells
Mus
RNA-Seq
antagonists
Antibodies
Antigen T Cell Receptor, beta Chain
BLOOD
Blood Vessel
Buffers
CD1D protein, human
CD8-Positive T-Lymphocytes
CD44 protein, human
Cells
Centrifugation
Collagenase, Clostridium histolyticum
Cytokine
Digestion
Discrimination, Psychology
Epithelium
Erythrocytes
Flow Cytometry
Fluorescent Dyes
Germinal Center
Intestines
Intestines, Small
Invariant Natural Killer T-Cells
Lamina Propria
Liver
Lung
Lymphocyte
Lymphocytic choriomeningitis virus
Lymphoid Tissue
Membrane Potentials
Mesentery
Mitochondrial Inheritance
Mus
Nodes, Lymph
Orphan Nuclear Receptor ROR-gammaT
Passive Immunization
PBS 57
Percoll
Population Group
Progressive Encephalomyelitis with Rigidity
Protoplasm
SELL protein, human
Skin
Spleen
Tetrameres
Thymus Gland
Tissues
For in vitro stimulation, murine iNKT hybridomas at 5 × 104 cells/well in 96-well plates were stimulated with an equal number of either JAWS II cells or transfected A20 cells in complete medium with glycolipids for 12 hr at 37°C, and levels of murine IL-2 secretion were determined. For some experiments, APCs were preincubated with glycolipids for 12 hr or fixed with paraformaldehyde (1% for 2 min at RT) prior to the addition of iNKT cell hybridomas. For in vitro stimulation of murine splenic iNKT cells, splenocytes from BALB/c or C57BL/6 mice were plated at 5 × 105 cells per well in complete medium in 96-well plates and stimulated with glycolipids for 48 hr at 37°C. Subsequently the levels of IL-4, IL-13, and IFN-γ in culture supernatants were quantified by capture ELISA. For assays with methyl-β-cyclodextrin (MβCD) treatment of APCs, we prepared splenic DCs with a CD11c+ cell isolation kit from Miltenyi Biotech from mice that had been injected s.c. 14 days previously with 105 Flt3-ligand-secreting B16 melanoma cells to increase the yield (Mach et al., 2000 (link)). Purified CD11c+ cells were cultured in complete medium for 18 hr with glycolipids (100 nM) as indicated, washed, and incubated at 37°C for 15 min in medium with or without 10 mM MβCD (Sigma-Aldrich) and subsequently fixed (1% paraformaldehyde) and cultured in 96-well plates at 2 × 105 cells/well with autologous splenocytes (4 × 105 cells per well). Supernatants were harvested 24 hr later for measurement of cytokines. In vivo activation of iNKT cells by i.p. glycolipid injection (4 nmoles) of female C57BL/6 mice and measurement of serum cytokines was done as previously described (Forestier et al., 2007 (link)). For determination of MβCD effects on in vivo presentation, CD11c+ purified splenic DCs from C57BL/6 mice injected s.c. 14 days previously with 105 Flt3-ligand-secreting B16 melanoma cells were cultured in complete medium with 100 nM of glycolipids for 18 hr, washed, and incubated for 15 min in RPMI-1640 with or without 10 mM MβCD. After extensive washing, the cells were injected i.p. into naive C57BL/6 mice (106 cells/mouse), and blood was collected at 2 hr and 24 hr for analysis of serum cytokine levels.
Atrial Premature Complexes
Biological Assay
BLOOD
CASP8 protein, human
Cells
Cell Separation
Culture Media
Cyclodextrins
Cytokine
Enzyme-Linked Immunosorbent Assay
Females
flt3 ligand
Glycolipids
Hybridomas
Interferon Type II
Interleukin-13
Invariant Natural Killer T-Cells
Jaw
Melanoma, B16
Mice, Inbred C57BL
Mus
paraform
secretion
Serum
Spleen
Most recents protocols related to «Invariant Natural Killer T-Cells»
Human iNKT cells were expanded from resting PBMCs of healthy donors as described before [41 (link)]. Briefly, freshly isolated PBMCs (1 x 106 cell/ml, 5 ml/well) were treated with 100 ng/ml αGalCer (KRN7000, Avanti Polar Lipids) and cultured for 13 days. 20 IU/ml human recombinant IL-2 (Proleukin, Novartis, Basel, Switzerland) was added to the cultures every other day starting from day 2. From day 6 onwards, the concentration of IL-2 was increased to 40 IU/ml. At the end of the expansion, an aliquot of each sample was collected and analysed for iNKT cell expansion by flow cytometry. Expansion was done in RPMI 1640 (Gibco, Waltham, MA, USA, or Lonza, Basel, Switzerland) supplemented with 5% (v/v) Human AB serum (Sigma-Aldrich, St. Louis, MO, USA), 1% (v/v) Penicillin/Streptomycin, 1 mM sodium pyruvate (Lonza), 1% (v/v) non-essential amino acids (Cegrogen Biotech, Stadtallendorf, Germany), 15 mM HEPES buffer (Sigma-Aldrich), and 55 μM 2-mercaptoethanol (AppliChem, Darmstadt, Germany).
2-Mercaptoethanol
Amino Acids, Essential
Buffers
Cells
Donors
Flow Cytometry
HEPES
Homo sapiens
Invariant Natural Killer T-Cells
KRN 7000
Lipids
Penicillins
Proleukin
Pyruvate
Serum
Sodium
Streptomycin
Non-MAIT CD4 and CD8 T cells (TCRβ+) were sorted into naive and memory populations with antibodies to mouse CD4, CD8, CD44 and CD62L (Fig S1 ). MAIT and iNKT cells were gated based on the expression of TCRβ and reactivity with either MR1-5-OP-RU or CD1d-αGalCer tetramers, respectively (Fig S1 ). Bulk non-MAIT conventional αβ T cells were FACS sorted as live B220−TCRβ+ cells. Purified cell populations were lysed for 30 minutes on ice with radioimmunoassay precipitation assay (RIPA) buffer (150 mM sodium chloride; 1% [v/v] Triton X-100; 1% [w/v] sodium deoxycholate; 0.1% [w/v] SDS; in 10 mM Tri-HCl) supplemented with cOmplete protease and cOmplete phosphatase inhibitor tablets (Roche) as per manufacturer’s instructions. Lysates were diluted with 4× Novex NuPage LDS Sample Buffer (ThermoFisher Scientific; Waltham, MA, USA) supplemented with beta-mercaptoethanol (Sigma; final concentration 1.25% [v/v]), and examined by routine Western blotting as previously described [19 (link)]. Apoptotic and necroptotic machinery was probed from mouse cell lysates with the following antibodies: rabbit anti-mouse RIPK1 (Cell Signaling Technologies, Danvers, MA, USA; #3493 S; Clone D94C12, 1/1,000), rabbit anti-mouse RIPK3 (ProSci #2283; Polyclonal, 1/1000), rat anti-mouse MLKL (Abcam, Cambridge, UK; #ab243142; Clone 3H1, 1/1,000), or rat anti-mouse caspase-8 (Enzo Life Sciences, New York, NY, USA; #ALX-804-448-C100; Clone 3B10, 1/1,000); and detected with donkey anti-rabbit IgG Horse Radish Peroxidase (HRP) (Merck, Kenilworth, NJ, USA; #NA-934; 1/2,000) or goat anti-rat IgG HRP (SouthernBiotech, Birmingham, AL, USA; #4030-05; 1/2,000) as appropriate. For housekeeping, Hsp90 was probed with rabbit anti-mouse Hsp90 (Cell Signalling Technology #4874; 1/1,000) and detected with donkey anti-rabbit IgG HRP (1/2,000). β-actin was detected with HRP-conjugated rabbit anti-mouse β-actin (Cell Signaling Technology #4970; Clone 13E5, 1/10,000). Blots were developed with Imobilon Forte Western HRP substrate as per manufacturer’s instructions and imaged on a ChemiDoc Touch Gel Imaging System (BioRad, Hercules, CA, USA), and analysed Image Lab Software (BioRad; version 6.1.0).
2-Mercaptoethanol
Actins
anti-IgG
Antibodies
Antigen T Cell Receptor, beta Chain
Apoptosis
Biological Assay
Buffers
Caspase-8
CD1D protein, human
CD8-Positive T-Lymphocytes
CD44 protein, human
Cells
Clone Cells
Deoxycholic Acid, Monosodium Salt
Dietary Fiber
Equus asinus
Goat
Horseradish Peroxidase
HSP90 Heat-Shock Proteins
Invariant Natural Killer T-Cells
Memory
Mus
Peptide Hydrolases
Phosphoric Monoester Hydrolases
Population Group
Rabbits
Radioimmunoassay
RIPK1 protein, human
RIPK3 protein, human
SELL protein, human
Sodium Chloride
T-Lymphocyte
Tetrameres
Touch
Triton X-100
The immunophenotyping of MAIT, iNKT, and γδ T cells was performed as previously described8 (link) on cryopreserved PBMCs from P1 prepared from a sample collected at the age of three years; and as previously described10 (link) on cryopreserved PBMCs from P2 prepared from a sample collected at the age of six years. Both patients were receiving broad-spectrum antimycobacterial drugs. Briefly, staining was performed in the presence of Fcblock (Miltenyi Biotec), with Zombie-NIR live-dead exclusion dye (#423105, BioLegend), anti-CD3-Alexa532 (Clone UCHT1, # 58-0038-42, Thermo Fisher Scientific), anti-γδTCR-FITC (#11-9959-42, Thermo Fisher Scientific), anti-Vδ2-APC-Fire750 (#331420, BioLegend), anti-CD56-BV605 (clone 5.1H11, #362538, BioLegend), anti-CD4-BV750 (#5663656, BD Biosciences), anti-CD8a-BV510 (clone RPA-T8, #301047, BioLegend), anti-Vα7.2-BV711 (clone 3C10, #351731, BioLegend), anti-Vα24-Jα18-PE-Cy7 (clone 6B11, #342912, BioLegend), anti-Vδ1-Vioblue (#30-100-555, Miltenyi Biotec), anti-CD161-PE (clone HP-3G10, #339938, BioLegend) and anti-Vβ11-APC (Miltenyi Biotec) antibodies. Cells were analyzed with an Aurora cytometer (Cytek). The gating strategy for MAIT cells, iNKT cells, γδ1+ T cells, and γδ2+ T cells has been described elsewhere8 (link),69 (link).
Agent, Antimycobacterial
Antibodies
Cells
Clone Cells
Fluorescein-5-isothiocyanate
Invariant Natural Killer T-Cells
KLRB1 protein, human
Mucosal-Associated Invariant T Cells
Muromonab-CD3
Patients
Pharmaceutical Preparations
T-Lymphocyte
It was a 1:1 randomized, double-blind, placebo-controlled study in parallel groups (PMBL vs placebo). The study received a favorable opinion from the Bioethics Committee of the Medical University of Lublin (Resolution No KE-0254/251/2020, 26 November 2020) and was prospectively registered with ClinicalTrials.gov (Trial Registration No NCT04802616, 17 March 2021). The study was conducted in accordance with Good Clinical Practice standards, and the ethical principles that have their origin in the Declaration of Helsinki. The project was implemented in 3 centers in eastern Poland from 22 March 2021 to 29 October 2021.
The primary objectives of this study were to evaluate the effectiveness of 3-month PMBL therapy in improving the clinical course of grass pollen-induced AR in children, and above all its effect on changes in the blood level of the γδT cell subsets: Th1-like, Th2-like, Th10-like, Th17-like, Treg-like; iNKT cell subsets: iNKT1, iNKT2, iNKT10, iNKT17, iNKTreg; cytotoxic T (Tc) cell subsets: Tc1, Tc2, Tc10, Tc17, Treg-like and to assess the relationship between the level of these lymphocytes and the severity of SAR symptoms assessed using the total nasal symptom score (TNSS).
The secondary study objectives were to assess the effect of PMBL therapy on the need for oral H1-antihistamines and intranasal corticosteroids during the grass pollen season and to evaluate the safety and tolerability of this therapy.
The primary objectives of this study were to evaluate the effectiveness of 3-month PMBL therapy in improving the clinical course of grass pollen-induced AR in children, and above all its effect on changes in the blood level of the γδT cell subsets: Th1-like, Th2-like, Th10-like, Th17-like, Treg-like; iNKT cell subsets: iNKT1, iNKT2, iNKT10, iNKT17, iNKTreg; cytotoxic T (Tc) cell subsets: Tc1, Tc2, Tc10, Tc17, Treg-like and to assess the relationship between the level of these lymphocytes and the severity of SAR symptoms assessed using the total nasal symptom score (TNSS).
The secondary study objectives were to assess the effect of PMBL therapy on the need for oral H1-antihistamines and intranasal corticosteroids during the grass pollen season and to evaluate the safety and tolerability of this therapy.
Adrenal Cortex Hormones
Blood Cells
Child
Cytotoxic T-Lymphocytes
Histamine H1 Antagonists
Invariant Natural Killer T-Cells
Lymphocyte
Nose
Placebos
Poaceae
Pollen
Safety
Th17 Cells
Therapeutics
Protocol full text hidden due to copyright restrictions
Open the protocol to access the free full text link
Biological Assay
IL22 protein, human
Invariant Natural Killer T-Cells
Liver
Mus
RAG-1 Gene
T-Lymphocyte
Top products related to «Invariant Natural Killer T-Cells»
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The FACSAria is a flow cytometry instrument manufactured by BD. It is used for the analysis and sorting of cells and other particles. The FACSAria is designed to provide high-performance cell sorting capabilities, enabling researchers to isolate specific cell populations for further analysis or experimentation.
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The FACSAria II is a high-performance cell sorter produced by BD. It is designed for precision cell sorting and analysis. The system utilizes flow cytometry technology to rapidly identify and separate different cell populations within a sample.
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Cytofix/Cytoperm is a fixation and permeabilization solution developed by BD for use in flow cytometry and immunohistochemistry applications. It is designed to facilitate the intracellular staining of proteins and other cellular components while preserving cellular structure and antigenicity.
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The FACSCalibur is a flow cytometry system designed for multi-parameter analysis of cells and other particles. It features a blue (488 nm) and a red (635 nm) laser for excitation of fluorescent dyes. The instrument is capable of detecting forward scatter, side scatter, and up to four fluorescent parameters simultaneously.
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The RNeasy kit is a laboratory equipment product that is designed for the extraction and purification of ribonucleic acid (RNA) from various biological samples. It utilizes a silica-membrane-based technology to efficiently capture and isolate RNA molecules.
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The LSRFortessa is a flow cytometer designed for multiparameter analysis of cells and other particles. It features a compact design and offers a range of configurations to meet various research needs. The LSRFortessa provides high-resolution data acquisition and analysis capabilities.
More about "Invariant Natural Killer T-Cells"
Invariant natural killer T-cells (iNKT cells), also known as type I natural killer T-cells, are a unique subset of T lymphocytes that play a critical role in regulating immune responses.
These cells express a semi-invariant T-cell receptor (TCR) and recognize lipid antigens presented by the MHC class I-like molecule CD1d. iNKT cells have been implicated in a variety of diseases, including autoimmunity, cancer, and infectious disorders.
They can be activated by a variety of stimuli, such as the bacterial product α-galactosylceramide (α-GalCer) and the calcium ionophore ionomycin.
Researchers studying iNKT cells often utilize flow cytometry techniques, such as FACSAria, FACSAria II, FACSCalibur, FACSCanto II, and LSRFortessa, to identify and characterize these cells.
Sample preparation can involve cell fixation and permeabilization using Cytofix/Cytoperm, as well as RNA extraction using the RNeasy kit.
The PubCompare.ai platform leverages cutting-edge AI technology to help researchers discover the latest research on iNKT cells, locate protocols from literature, preprints, and patents, and identify the best protocols and products for their work.
This tool can improve reproducibility and accruacy, enabling researchers to experience the future of research today.
These cells express a semi-invariant T-cell receptor (TCR) and recognize lipid antigens presented by the MHC class I-like molecule CD1d. iNKT cells have been implicated in a variety of diseases, including autoimmunity, cancer, and infectious disorders.
They can be activated by a variety of stimuli, such as the bacterial product α-galactosylceramide (α-GalCer) and the calcium ionophore ionomycin.
Researchers studying iNKT cells often utilize flow cytometry techniques, such as FACSAria, FACSAria II, FACSCalibur, FACSCanto II, and LSRFortessa, to identify and characterize these cells.
Sample preparation can involve cell fixation and permeabilization using Cytofix/Cytoperm, as well as RNA extraction using the RNeasy kit.
The PubCompare.ai platform leverages cutting-edge AI technology to help researchers discover the latest research on iNKT cells, locate protocols from literature, preprints, and patents, and identify the best protocols and products for their work.
This tool can improve reproducibility and accruacy, enabling researchers to experience the future of research today.