We performed SSDS (27 (link)) using antibodies against DMC1 (Santa Cruz; C-20, sc 8973), to identify meiotic DSB hotspots in testis tissue from five individual human males. The genotype at the PRDM9 locus was established in each of these individuals using the primers and method described in (9 (link)). SSDS samples were compared to a matched control and DSB hotspots were defined using MACS 2.0.10 (59 (link)). Whole genome sequencing libraries were prepared for three individuals according to an established protocol (Illumina). GATK best practices (60 ) were followed to identify variants using the GATK Genome Analysis Toolkit v2.3.9 (61 (link)). Chromatin immunoprecipitation using antibodies against H3K4me3 (Abcam; ab8580) followed by high throughput sequencing was performed to identify sites of trimethylated H3K4 in one individual. Peaks in H3K4me3 data were called using SICER v1.1 (62 (link)). All high throughput sequencing was performed on an Illumina HiSeq 2500. Spermatocyte spreads were prepared for immunofluorescence microscopy using the method described in (63 (link)). Detailed methods are available in Supplementary Materials .
Spermatocytes
Spermatocytes are specialized cells found in the testis that undergo meiotic division to produce haploid spermatids.
These cells play a crucial role in male gametogenesis, the process of sperm cell formation.
Spermatocytes are classified into primary and secondary types, each with distinct stages of development.
Understanding the biology and function of spermatocytes is essential for researchers investigating male fertility, reproductive disorders, and the underlying mechanisms of spermatogenesis.
PubCompare.ai's AI-driven platform can optimize your spermatocytes research by helping you effortlessly locate relevant protocols from literature, pre-prints, and patents, and identify the most accurate and reproducilbe methods to enhance the quality of your work.
These cells play a crucial role in male gametogenesis, the process of sperm cell formation.
Spermatocytes are classified into primary and secondary types, each with distinct stages of development.
Understanding the biology and function of spermatocytes is essential for researchers investigating male fertility, reproductive disorders, and the underlying mechanisms of spermatogenesis.
PubCompare.ai's AI-driven platform can optimize your spermatocytes research by helping you effortlessly locate relevant protocols from literature, pre-prints, and patents, and identify the most accurate and reproducilbe methods to enhance the quality of your work.
Most cited protocols related to «Spermatocytes»
Antibodies
DMC1 protein, human
Genome
Genotype
histone H3 trimethyl Lys4
Immunofluorescence Microscopy
Immunoprecipitation, Chromatin
Males
Miotics
Oligonucleotide Primers
Spermatocytes
SSD
Testis
Tissues
DNA sequencing of 51 village dogs was performed using Illumina technology to 8–12 fold coverage, using 101 base-pair paired end reads (Table S1 and Table S2 ). Reads were aligned to the reference genome using bwa[31] (link). Variant calls were made using GATK[32] (link), and phased using BEAGLE[33] (link). Extensive filters were applied to ensure that only high quality variants were used for the purposes of recombination rate estimation (see Supplementary Text S1 for details). After filtering, recombination rates were estimated using the statistical package, LDhat[15] (link).
For H3K4me3 ChIPseq experiments, spermatocytes of various stages were cell types were purified sedimentation velocity (STA-PUT) of collagenase digested single cell suspensions. Chromatin immunoprecipitation (ChIP) of H3K4me3 was performed using standard procedures, and validated through qPCR (Table S6 ). Libraries were prepared using Tru-Seq adaptors, with sequencing performed using 150 bp paired-end reads from an Illumina HiSeq 2500 in Rapid Run mode. Reads were mapped to the canine reference genome, and H3K4me3 peaks called using MACS[34] (link).
Detailed methods are available in the Supplementary Information. Genetic maps and called hotspots are available for download from:http://autonlab.einstein.yu.edu/dog_recomb/
For H3K4me3 ChIPseq experiments, spermatocytes of various stages were cell types were purified sedimentation velocity (STA-PUT) of collagenase digested single cell suspensions. Chromatin immunoprecipitation (ChIP) of H3K4me3 was performed using standard procedures, and validated through qPCR (
Detailed methods are available in the Supplementary Information. Genetic maps and called hotspots are available for download from:
Base Pairing
Cells
Chromosome Mapping
Collagenase
Genome
histone H3 trimethyl Lys4
Immunoprecipitation, Chromatin
Recombination, Genetic
Spermatocytes
The standard chromosome spreading protocol has been described previously for our laboratory (Lenzi et al., 2005 (link)). The nuclear contents of whole-mount spermatocytes (or oocytes) were displayed by drying down a cell suspension, in hypotonic buffer, from either testis, or ovary, in 1% paraformaldehyde containing 0.15% Triton X-100 (Peters et al., 1997 (link)). Whole testes or ovaries were incubated on ice for 60 min in hypotonic extraction buffer (HEB; 30 mM Tris, pH 8.2, 50 mM sucrose, 17 mM trisodium citrate dihydrate, 5 mM EDTA, 0.5 mM DTT, and 0.5 mM PMSF). Either a one-inch length of tubule, or a whole ovary, were placed in a 20-μl drop of 100 mM sucrose, pH 8.2, the tissue was macerated, and a second 20-μl drop of sucrose solution was added and the cell suspension was pipetted up and down several times. Remnant pieces of tubule were removed. Cleaned slides were dipped in the paraformaldehyde and Triton X-100 solution, and most liquid was drained off, such that only enough liquid remained to coat the slide. 20 μl of the cell suspension was added in one corner and the cells were slowly dispersed, first in a horizontal direction and then vertical. The remaining 20 μl of cell suspension was used to make a second slide and both were placed in a humid chamber to dry slowly at RT for 2 h. The slides were washed three times for 1 min in 0.4% Kodak Photo-Flo 200 and air dried for at least 15 min. For EM preparations, to make the SCs accessible to immunogold grains, the slides were DNaseI treated (1 μl/ml of DMEM) before being air dried (Moens et al., 2002 (link)). The slides were washed and blocked (three times for 10 min each) in PBS and incubated in primary antibodies overnight at RT in a humid chamber. Primary antibodies were used at varying concentrations, and generally a 10-fold higher concentration was used for EM than immunofluorescence. After washes, slides were incubated in secondary antibodies, conjugated to either fluorochrome or colloidal gold (Jackson ImmunoResearch Laboratories), for 2 h at 37°C. After washes the slides were mounted with ProLong Antifade (Invitrogen) for fluorescence microscopy. Images were captured on a Olympus IX81 microscope attached to a 12-bit Cooke Sensicam CCD instrument and sent to IP Lab software.
For EM, slides were incubated in 4% alcoholic phosphotungstic acid for 15 min, followed by three 1-min washes in 95% ethanol, to enhance visualization of MNs. Slides were air dried and then dipped in 0.25% formvar (Electron Microscopy Sciences) and air dried under glass. The plastic was scored, treated with 25% hydrofluoric acid, and floated off in water with attached cells. Plastic was transferred to EM grids and used for transmission EM (JEOL 1200EX).
For EM, slides were incubated in 4% alcoholic phosphotungstic acid for 15 min, followed by three 1-min washes in 95% ethanol, to enhance visualization of MNs. Slides were air dried and then dipped in 0.25% formvar (Electron Microscopy Sciences) and air dried under glass. The plastic was scored, treated with 25% hydrofluoric acid, and floated off in water with attached cells. Plastic was transferred to EM grids and used for transmission EM (JEOL 1200EX).
Alcoholics
Antibodies
Buffers
Cells
Cereals
Chromosomes
Edetic Acid
Electron Microscopy
Ethanol
Fluorescent Antibody Technique
Fluorescent Dyes
Formvar
Gold Colloid
Hydrofluoric acid
Microscopy
Microscopy, Fluorescence
Oocytes
Ovary
paraform
Phosphotungstic Acid
Sodium Citrate Dihydrate
Spermatocytes
Sucrose
Testis
Tissues
Transmission, Communicable Disease
Triton X-100
Tromethamine
For histology, testes were fixed in Bouin's solution, embedded in paraffin, sectioned, and stained with hematoxylin and eosin. Surface spread of spermatocyte nuclei was performed as previously described (Peters et al., 1997 (link); Kolas et al., 2005). To obtain fetal oocytes, Sycp2−/− females were mated with Sycp2+/− males. Vaginal copulatory plugs were checked the next morning. Fetal oocytes were collected for analysis at 17.5 dpc. The primary antibodies used for immunofluorescence were as follows: anti-SYCP1 (a gift from P. Moens and B. Spyropoulos [York University, Toronto, Ontario, Canada] and C. Höög [Karolinska Institute, Stockholm, Sweden]; Dobson et al., 1994 (link); Liu et al., 1996 (link); Schmekel et al., 1996 (link)), anti-SYCP2 serum 493 (1:400; a gift from C. Heyting, Wageningen University, Wageningen, Netherlands; Offenberg et al., 1998 (link)), anti-SYCP3 (1:500; a gift from S. Chuma, Kyoto University, Kyoto, Japan; Chuma and Nakatsuji, 2001 (link)), anti-STAG3 (1:500; a gift from J.L. Barbero, Centro Nacional de Biotecnologia, Madrid, Spain; Prieto et al., 2001 (link)), FITC-conjugated anti-γH2AX (1:500; Upstate Biotechnology), and CREST antiserum (1:5,000; a gift from B.R. Brinkley, Baylor College of Medicine, Houston, TX). Tissue sections were visualized under an Axioskop 40 microscope. Images were captured with a digital camera (Evolution QEi; MediaCybernetics) and processed with ImagePro software (Phase 3 Imaging Systems) and Photoshop (Adobe).
Antibodies
Biological Evolution
Bouin's solution
Care, Prenatal
Cell Nucleus
Cola
Crista Ampullaris
Eosin
Females
Fingers
Fluorescein-5-isothiocyanate
Fluorescent Antibody Technique
Immune Sera
Males
Microscopy
Ovum
Paraffin Embedding
Pharmaceutical Preparations
Serum
Spermatocytes
Testis
Tissues
Vagina
Testes from males kept at 27°C (control) (n = 7), or at 35°C (n = 5), or treated with busulfan (n = 12) were snap frozen in liquid nitrogen and stored at −80°C until RNA extraction. Total RNA was extracted from testes using the RNAqueous®-Micro Kit (Ambion, Austin, TX, USA, http://www.ambion.com ). Further processing to determine the threshold cycle (Cq) values of the reference endogenous control gene elongation factor 1-alpha (ef1α) and β-actin1, as well as of insulin-like 3 (insl3)[35] (link), steroidogenic acute regulatory protein (star), and cytochrome P450, family 17, subfamily A, polypeptide 1 (cyp17a1), androgen receptor (ar), anti-Müllerian hormone (amh), gonadal soma-derived growth factor (gsdf), insulin growth factor 1a (igf1a) and 1b (igf1b)[36] (link), and germ cell genes piwil1 (spermatogonia), and synaptonemal complex protein 3 (sycp3l) (spermatocytes) by qPCR analysis was performed as reported [33] (link), [37] (link), [38] (link). No significant differences (P>0.05) were found among the mean β-actin1 and ef1α Cq values in the different groups (Figure S3 ) thus validating β-actin1 and ef1α as suitable references for the current experiments. Then, relative mRNA levels of the selected genes were normalized to β-actin1 and ef1α, and expressed as fold of relative control (27°C) mRNA levels. Nomenclature of zebrafish proteins, mRNAs and genes are according to ZFIN (http://zfin.org ) rules.
AR protein, human
austin
Busulfan
Carisoprodol
CYP17A1 protein, human
Cytochrome P450
Elongation Factor 1alpha
Freezing
Genes
Germ Cells
Growth Factor
Insulin
Males
Mullerian-Inhibiting Hormone
Nitrogen
Polypeptides
Proteins
RNA, Messenger
Spermatocytes
Spermatogonia
steroidogenic acute regulatory protein
Synaptonemal Complex
Testis
Zebrafish Proteins
Most recents protocols related to «Spermatocytes»
Tamalin KO mice were kindly provided by Dr. Lino Tessarollo [58 (link)]. We obtained mice harboring the Cytip tm1a “knockout first” allele from the Mutant Mouse Resource and Research Centers (MMRRC) at University of California-Davis. The Cytip tm1a allele has loxP sites flanking exon 4 and 5. Mice heterozygous for Cytip tm1a were bred with mice harboring the Spo11-Cre transgene (C57BL/6-Tg Spo11-cre)Rsw/PecoJ), which express Cre recombinase in spermatocytes shortly after meiotic entry [77 (link)]https://sciwheel.com/work/citation?ids=1181041&pre=&suf=&sa=0&dbf=0 . The resulting progeny from this cross harbored the Cytip tm1b KO allele. We subsequently bred mice harboring the Tamalin KO and Cytip KO alleles to create the Tamalin, Cytip DKO mice for analysis. We also bred mice heterozygous for Cytip tm1a allele with mice harboring FLP recombinase transgene (FLP tg/0) to produce progeny with the Cytip tm1c “conditional knockout” (cKO) allele. These mice were used to create the Cytip cKO mice that were homozygous for the Cytip tm1c allele and hemizygous for the Spo11-Cre transgene.
Alleles
Cre recombinase
Exons
FLP recombinase
GRASP protein, human
Hemizygote
Heterozygote
Homozygote
Mice, Knockout
Mice, Laboratory
Miotics
Spermatocytes
SPO11 protein, human
Transgenes
Spermatocyte and oocyte chromatin spreads were prepared as previously described [78 (link)–80 (link)]. Primary antibodies and dilution used for immunolabeling are presented in S4 Table . Secondary antibodies against human, rabbit, rat, mouse, and guinea pig IgG and conjugated to Alexa 350, 488, 568, or 633 (Life Technologies) were used at a 1:500 dilution.
Images from chromatin spread preparations were captured using a Zeiss CellObserver Z1 microscope linked to an ORCA-Flash 4.0 CMOS camera (Hamamatsu). Testis sections stained with H&E staining were captured using a Zeiss AxioImager A2 microscope linked to an AxioCam ERc5s camera, or Keyence BZ-X800 fluorescence microscope. Images were analyzed and processed using ZEN 2012 blue edition imaging software (Zeiss) or with BZ-X800 Viewer and Analyzer software (Keyence).
Images from chromatin spread preparations were captured using a Zeiss CellObserver Z1 microscope linked to an ORCA-Flash 4.0 CMOS camera (Hamamatsu). Testis sections stained with H&E staining were captured using a Zeiss AxioImager A2 microscope linked to an AxioCam ERc5s camera, or Keyence BZ-X800 fluorescence microscope. Images were analyzed and processed using ZEN 2012 blue edition imaging software (Zeiss) or with BZ-X800 Viewer and Analyzer software (Keyence).
Alexa 350
Antibodies
Cavia
Chromatin
Chronic multifocal osteomyelitis
Homo sapiens
Mice, House
Microscopy
Microscopy, Fluorescence
Oocytes
Orcinus orca
Rabbits
Spermatocytes
Technique, Dilution
Testis
The sections were evaluated according to the following morphological criteria [14 (link)]:
Absence of seminiferous tubules (tubular sclerosis);
Absence of germ cells (Sertoli cell only syndrome);
Maturation arrest – spermatogenesis arrested at different stages (spermatogonia, spermatocytes, or spermatids);
Hypospermatogenesis – all cell types up to spermatozoa are present, but there is a distinct decline in reproducing spermatogonia;
Mixed atrophy can be global (present in all tubules) or focal, with a variable percentage of tubules displaying various stages of qualitatively and quantitatively limited spermatogenesis.
Atrophy
Cells
Germ Cells
Oligospermia
Sclerosis
Seminiferous Tubule
Sertoli Cell-Only Syndrome
Sperm
Spermatid
Spermatocytes
Spermatogenesis
Spermatogonia
Patient data were identified through AUMC and UZB records, including age at time of testicular biopsy, testicular volume by ultrasound, SD of height- and weight-for-age z-score (WHO, 2006 ), general health condition, potential pre-treatment, and disease diagnosis. Based on diagnoses, we classified patients into four groups: extra-cerebral cancer (solid tumors), central nervous system cancer (CNS tumors), leukemia and lymphoma (blood cancer), and non-malignant hematological disorders.
We analyzed the patient data in the age groups 0 to <4, 4 to <7, 7 to <11, and 11 to <14 years, to reflect the prepubertal testicular and germ cell developmental periods, namely, gonocyte differentiation into spermatogonia and dispersion throughout elongating seminiferous tubules; proliferation of spermatogonia to populate the testes; gradual maturation of somatic testicular environment; and finally Sertoli cell maturation allowing for spermatogonial differentiation into spermatocytes and later spermatids, respectively (Masliukaite et al., 2016 (link)).
We analyzed the patient data in the age groups 0 to <4, 4 to <7, 7 to <11, and 11 to <14 years, to reflect the prepubertal testicular and germ cell developmental periods, namely, gonocyte differentiation into spermatogonia and dispersion throughout elongating seminiferous tubules; proliferation of spermatogonia to populate the testes; gradual maturation of somatic testicular environment; and finally Sertoli cell maturation allowing for spermatogonial differentiation into spermatocytes and later spermatids, respectively (Masliukaite et al., 2016 (link)).
Age Groups
Biopsy
Central Nervous System Neoplasms
Diagnosis
Diploid Cell
Germ Cells
Hematological Disease
Hematologic Neoplasms
Leukemia
Lymphoma
Malignant Neoplasms
Neoplasms
Nervous System Neoplasms
Patients
Seminiferous Tubule
Sertoli Cells
Spermatid
Spermatocytes
Spermatogonia
Ultrasonography
The Angptl2 knockout mice (Angptl2fl/fl) with insertion of loxp in flanks of exon 2 in C57BL/6 background were generated by Nanjing Mouse Model, Lt Corporation. The male Angptl2fl/fl; stra8-cre mice (Angptl2 is specifically deleted in early-stage spermatogonia, spermatocytes and sperm) were crossed with wild-type (WT) female mice to generate Angptl2 knockout mice (Angptl2−/−). The genetic deletion of Angptl2 was further confirmed by PCR. The Mag knockout mice (Mag−/−) in C57BL/6 background were purchased from Mutant Mouse Regional Resource Centers (MMRRC). Mag−/−Angptl2−/− double knockout mice and their littermates Mag−/−Angptl2+/+ mice were also bred for the related experiments. The Guideline for Animal Care at Shanghai Jiao Tong University School of Medicine approved all the animal experimental procedures.
Animals
Exons
Females
Gene Deletion
Males
Mice, Knockout
Mice, Laboratory
Sperm
Spermatocytes
Spermatogonia
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More about "Spermatocytes"
Spermatogenesis, Male Gamete Formation, Meiotic Division, Gametogenesis, Reproductive Biology, Testicular Cells, Sperm Production, Primary Spermatocytes, Secondary Spermatocytes, Spermatid Development, Fertility Research, Reproductive Disorders, Testis Function, TRIzol Reagent, Photo-Flu, DMEM, FBS, HiSeq 2500, In Situ Cell Death Detection Kit, Hoechst 33342, Ab97672, Ab15090, Agilent 2100 Bioanalyzer.
Spermatocytes are the specialized cells found in the testis that undergo meiotic division to produce haploid spermatids, which are the precursors to mature sperm cells.
These cells play a crucial role in male gametogenesis, the process of sperm cell formation.
Spermatocytes are classified into primary and secondary types, each with distinct stages of development.
Understanding the biology and function of spermatocytes is essential for researchers investigating male fertility, reproductive disorders, and the underlying mechanisms of spermatogenesis.
PubCompare.ai's AI-driven platform can optimize your spermatocytes research by helping you effortlessly locate relevant protocols from literature, pre-prints, and patents, and identify the most accurate and reproducible methods to enhance the quality of your work.
Leverage TRIzol reagent, Photo-Flo, DMEM, FBS, HiSeq 2500, In Situ Cell Death Detection Kit, Hoechst 33342, Ab97672, Ab15090, and Agilent 2100 Bioanalyzer to further advance your spermatocytes research and gain deeper insights into this critical aspect of male reproductive biology.
Spermatocytes are the specialized cells found in the testis that undergo meiotic division to produce haploid spermatids, which are the precursors to mature sperm cells.
These cells play a crucial role in male gametogenesis, the process of sperm cell formation.
Spermatocytes are classified into primary and secondary types, each with distinct stages of development.
Understanding the biology and function of spermatocytes is essential for researchers investigating male fertility, reproductive disorders, and the underlying mechanisms of spermatogenesis.
PubCompare.ai's AI-driven platform can optimize your spermatocytes research by helping you effortlessly locate relevant protocols from literature, pre-prints, and patents, and identify the most accurate and reproducible methods to enhance the quality of your work.
Leverage TRIzol reagent, Photo-Flo, DMEM, FBS, HiSeq 2500, In Situ Cell Death Detection Kit, Hoechst 33342, Ab97672, Ab15090, and Agilent 2100 Bioanalyzer to further advance your spermatocytes research and gain deeper insights into this critical aspect of male reproductive biology.