The largest database of trusted experimental protocols

Zygote

Zygote: The initial cell formed by the union of a sperm and an egg.
It contains a complete set of genetic material and is the first stage in embryonic development.
Zygote experiments can provide valuable insights into early cell division and differentiation processes.
PubCompare.ai can help locate the best protocols from literature, pre-prints, and patents to enhance the reproducibility and accuracu of your zygote research using AI-driven comparisons.

Most cited protocols related to «Zygote»

For the initial screen, zebrafish TLAB strain zygotes were collected and injected through the chorion with a mix of 25 pg sgRNA, 300 pg Cas9 mRNA, and phenol red dye in a single mix. Embryos were grown to 24–30hpf and genomic DNA extracted from pools of 8–10 embryos (unless otherwise indicated) using the HotSHOT method [18] . For comparison between Cas9 mRNA and protein, higher levels of sgRNA were co-injected (200–300 pg). Cas9/sgRNA complex was formed by incubating protein with sgRNA at room temperature for 5 minutes before injection.
Full text: Click here
Publication 2014
Chorion Embryo Genome Proteins RNA, Messenger Strains Zebrafish Zygote

Protocol full text hidden due to copyright restrictions

Open the protocol to access the free full text link

Publication 2013
2',5'-oligoadenylate Amino Acids Anemia, Diamond-Blackfan, 2 Animals Blastocyst Cytoplasm Donors Embryo Females Males Mice, House Mice, Inbred ICR Mothers Oviducts RNA, Messenger Strains Tissue Donors Uterus Zygote
B6D2F1 female mice were superovulated and mated with B6D2F1 males, and fertilized eggs were collected from the oviduct. The pronuclear stage eggs were injected with pX330 plasmids, hCas9 mRNA, and sgRNAs at indicated concentrations. The eggs were cultivated in kSOM overnight then transferred into the oviducts of pseudopregnant ICR females.
Publication 2013
Eggs Fallopian Tubes Females Males Mice, House Oviducts Plasmids RNA, Messenger Zygote
TEV-cleavage experiments were performed in a Rad21 null background. Four independent Rad21ex alleles were generated by imprecise excision of the P element GE50159 (see the Supplemental Data for details). For the generation of transgenic flies expressing TEV-cleavable versions of Rad21 under control of the tubulin-promotor (Rad21TEV), three TEV-recognition sites were introduced into a previously generated pCaSpeR-Rad21-myc10 vector. To generate a nuclear v5-tagged TEV protease expression construct, three NLS- and one v5-epitope tag were added to the coding region of TEV. For cloning details, see the Supplemental Data. Transgenic lines were produced by standard P-element-mediated germline transformation.
The fly stock Rad21ex15, Rad21(550-3TEV)-myc was used as a source of TEV-cleavable Rad21 (Rad21TEV). The only exceptions are the western blot experiment in Figure 1D and the characterization of the zygotic Rad21 mutant phenotype (Figure 2, Figure S2, Movies S1–S4), for which Rad21ex8, Rad21(271-3TEV)-myc and 2x Rad21(271-3TEV)-myc; Rad21ex3, respectively, were used as sources of Rad21TEV.The fly stock Rad21ex3, Rad21-myc served as a control (transgenic Rad21 without TEV sites).
Further details on stocks can be found in the Supplemental Data. A complete stocklist with all genotypes and abbreviations used in the text can be found in Table S1.
Full text: Click here
Publication 2008
Alleles Animals, Transgenic Cloning Vectors Cytokinesis Epitopes Genotype Germ Line Phenotype TEV protease Tubulin Western Blot Zygote
Wild type adult male and female zebrafish, Danio rerio, were obtained from a commercial supplier (Ekkwill, Gibsonton, FL) and maintained in 30 gal aquaria at 28°C on a 14:10 light-dark cycle. Fertilized eggs were collected after natural spawning, washed, and distributed into 20 × 100 mm culture plates (Fisher Scientific). Embryos (150 embryos/50 ml egg water) were allowed to develop at 28°C on a 14L:10D cycle [36 ]. For developmental expression analysis embryos were collected after timed intervals: 2, 6, 12, 24, 48, 72, and 120 hours post-fertilization (hpf), quick-frozen on dry ice, and stored at -70°C until analysis (3 independent embryo pools, 50 embryos per pool, per time point from the same spawning group). For treatment expression analysis embryos were left untreated until 24 hpf and then exposed to 17β-estradiol (E2; 0.1 μM), testosterone (T; 1 μM), ICI 182,780 (ICI; 10 μM; Tocris Bioscience, Ellisville, MO), β-napthaflavone (BNF; 10 nM), or 2,3,7,8, tetrachlodibenzo-p-dioxin (TCDD; 1 nM; Ultra Scientific, N. Kingstown, RI) dissolved in dimethyl sulfoxide (DMSO). All chemicals were obtained from Sigma-Aldrich (St. Louis, MO) unless otherwise noted. Stock solutions of chemicals were added directly to egg water and replaced daily. In addition, embryos were treated with DMSO alone (final concentration, 0.0006%), EtOH alone (final concentration 0.0005%), or left untreated as a control. Embryos were collected at 96 hpf, quick-frozen on dry ice, and stored at -70°C until analysis (3 independent embryo pools per treatment). Treated embryo RNAs were used for both housekeeping gene expression analysis (Table 3) and gene of interest normalization (Figure 2). Tissues (brain, eye, heart, liver, muscle, gonad) were collected from adult male and female zebrafish, pooled by sex (3 pools per tissue type/sex, 5 fish per pool), quick-frozen on dry ice, and stored at -70°C. Adult fish were reproductively active stock from our breeding colony.
Full text: Click here
Publication 2008
Adult Brain Dioxins Dry Ice Embryo Embryonic Development Estradiol Ethanol Females Fertilization Fishes Freezing Gene Expression Profiling Genes Gonads Heart Histocompatibility Testing ICI 182780 Liver Males Muscle Tissue RNA Sulfoxide, Dimethyl Testosterone Tetrachlorodibenzodioxin Tissues Zebrafish Zygote

Most recents protocols related to «Zygote»

The raw data of 144 seed coats RNA-seq data of six Brassica species, B. rapa (Parkland-R), B. oleracea (Chinese Kale-O), B. nigra (CR2748-N), B. napus (DH12075-P), B. juncea (AC Vulcan-J), B. carinata (C901163-C) with eight developmental stages (Unfertilized ovule integuments (UO; no embryo), 1- to 2-cell zygote stage (S1), 4- to 8-cell stage (S2, 8-cell stage shown), 16- to 64-cell stage (S3, globular stage shown), heart stage(S4), torpedo stage(S5), bent stage(S6), and mature (S7) stage of seed formation) were collected from Gene Expression Omnibus under accession no. GSE153257. Low-quality reads were removed from the raw reads using Cutadapt and Trimmomatic software to get clean reads [39 , 2 ]. Clean reads were mapped to the corresponding reference genome using HISAT2 software [51 (link)]. Gene expression levels of each gene were calculated using StringTie and Ballgown software [51 (link)]. The read counts of each gene were calculated using the htseq-count function in htseq software [1 (link)]. The R package DEseq2 (v1.16.1) was used to identify the differentially expressed genes (DEGs) between leaves of different colors based on the following criteria: padj < 0.05 & log2FoldChange > 2 [5 (link)].
Full text: Click here
Publication 2023
Brassica Cells Chinese Embryo Eye Gene Expression Genes Heart Kale Ovule RNA-Seq Substantia Nigra System, Integumentary Torpedo Zygote
Mice were group housed in cages of 2 to 5 on a 12-hour light/12-hour dark cycle with food and water provided ad libitum. The mice used in this study for behavioral testing were between 3–5 months of age, including both males and females.
Mice with Nrxn1α promoter and exon 1 deletion (ΔExon1) were described previously [9 (link)] and have been maintained in C57BL/6J background. Mice with Nrxn1α exon 9 deletion (ΔExon9) were generated by crossing an exon 9 floxed allele of Nrxn1α (Nrxn1tm1a(KOMP)Wtsi from MRC Mary Lyon Center, Harwell, UK) [13 (link)] with mice carrying UBC-CreERT2 [70 (link)]. An unexpected leaky activity of Cre in male gametes [33 (link)] carrying both floxed exon 9 of Nrxn1α and UBC-Cre-ERT2 leads to a germline loss of exon 9 (ΔExon9). The deletion of exon 9 was confirmed by PCR analysis using primers flanking the deleted region and within the exon 9 sequence. To study a CNV identified in an individual on the autism spectrum [27 (link)], mouse homologue of the ~20 kb deleted region at intron 17 of Nrxn1α was identified and deleted using the CRISPR/Cas9-medicated genomic editing approach. Two sgRNAs (5’ AATATGTGGGCAAGCTGGGT TGG 3’ and 5’ GAAATGGTACCTTTGATCTA AGG 3’) flanking the deletion region in intron 17 of Nrxn1α were injected together with Cas9 protein into 1-cell zygote of C57BL/6J/SJL genetic background. The target deletion was confirmed by PCR and sequencing analyses using primers flanking the deleted region and deletion carriers (ΔIntron17) were back crossed to C57BL/6J for 5 more generations to collect littermates for behavioral phenotyping.
To generate experimental animals used in this study, heterozygous males were bred with heterozygous females to generate mice with homozygous (ΔExon9/ΔExon9; ΔIntron17/ΔIntron17) or heterozygous (ΔExon9/+; ΔIntron17/+) deletions, as well as WT littermates (+/+). We noted that mice carrying homozygous deletion of exon 9 (ΔExon9/ΔExon9) were significantly underrepresented with WT:Het:Homo ratio as 48:90:29, in contrast to the expected ratio of 42:83:42, indicating sub-viability in mice carrying a complete loss of Nrxn1α. To generate mice carrying ΔExon1, heterozygous carriers of ΔExon1 were bred with WT mice to collect heterozygotes and WT for experiments described in this study.
Full text: Click here
Publication 2023
Alleles Animals, Laboratory Cells Clustered Regularly Interspaced Short Palindromic Repeats CRISPR-Associated Protein 9 Deletion Mutation Exons Females Food Gametes Gene Deletion Genetic Background Germ Line Heterozygote Homo Homozygote Introns Males Mice, House mitogen-activated protein kinase 3, human Oligonucleotide Primers Pervasive Development Disorders Sequence Analysis Zygote
All mice were bred in specific pathogen–free conditions, and experiments were approved by the Institutional Animal Care and Use Committee of Osaka University. Littermate controls were used for all experiments when feasible. C57BL/6J mice were purchased from CLEA Japan. CAG-EGFP mice (RBRC 00267) were obtained from Riken BioResource Research Center (Okabe et al., 1997 (link)), Mac-Gata6 KO was described previously (Okabe and Medzhitov, 2014 (link)), and these mice were backcrossed to B6. Postn-DTR mice were generated by CRISPR/Cas-mediated gene targeting in C57BL/6 zygotes. In brief, CRISPR RNA: 5′-ACG​GAG​CTC​AGG​GCT​GAA​GA-3′ was used as targeting guide (Integrated DNA technologies) and mutated DTR sequence was inserted by microinjection (Saito et al., 2001 (link); Furukawa et al., 2006 (link)).
Full text: Click here
Publication 2023
Clustered Regularly Interspaced Short Palindromic Repeats Institutional Animal Care and Use Committees Mice, Inbred C57BL Mice, Laboratory Microinjections Specific Pathogen Free Zygote
Truman Reservoir is the largest reservoir in Missouri and was formed by the damming of the Osage River near Warsaw, Missouri in 1979 [34 ] by the U.S Army Corps of Engineers. Truman Reservoir has a surface area of > 22,500 ha and four major tributaries, the Osage River, Pomme de Terre River, South Grand River, and Tebo Creek (Fig 1). Another major tributary, the Sac River, empties into the Osage River just above the reservoir at river kilometer 80 (rkm, river kilometers upstream from Truman Dam). Grass carp have likely been present since the formation of the reservoir via inundation of ponds in the watershed that were stocked with grass carp for vegetation control, and potentially through natural recruitment or continued escapement from ponds in the watershed where grass carp are stocked for vegetation control [35 , 36 (link)]. Because the reservoir was filled before triploid grass carp production technology was developed, and the production and stocking of diploid grass carp remains legal in Missouri [30 ], all escapees from ponds inundated by the initial filling of the reservoir would have been fertile, diploid fish. Many fish that later escaped from ponds in the watershed would also have been fertile. The Missouri Department of Conservation, which manages the Truman Reservoir fishery, does not stock grass carp into the reservoir [20 (link)]. With the discovery of successful spawning through the collection of fertilized eggs on four Truman Reservoir tributaries [20 (link)], it became evident that natural recruitment has likely increased the population in the system.
Full text: Click here
Publication 2023
Diploidy Fertility Fishes Grass Carp Rivers Triploidy Zygote
A total of 140 fertilized eggs were randomly divided into two groups, each containing 70 eggs. All eggs were swabbed with 70% ethanol and then laid flat for 1 hour. A window of approximately 0.5 cm in diameter was cut in the equatorial plane of the eggshell to expose the blastoderm. A volume of 2 μL of recombinant lentivirus expressing IRF1 or control empty lentivirus wase injected into the subgerminal cavity of the embryo using a microinjector (Tritech Research, Los Angeles, CA, USA). Micropipettes of 40 μm in diameter, used for injection, were made from borosilicate glass capillaries drawn out with a micropipette puller. After the injection, windows were sealed with adhesive tape. Eggs were then incubated in a specialized incubator maintained at 37.8°C and 75% relative humidity.
Full text: Click here
Publication 2023
Blastoderm Capillaries Dental Caries Eggs Egg Shell Embryo Ethanol Humidity IRF1 protein, human Lentivirus Zygote

Top products related to «Zygote»

Sourced in United States, Germany, United Kingdom, France, Japan
M2 medium is a cell culture media formulation designed for the maintenance and cultivation of mouse embryos. It provides the necessary nutrients and growth factors to support the development and growth of mouse embryos in an in vitro environment.
Sourced in United States, Germany, Switzerland, United Kingdom, Japan, China, Italy, France, Macao, Israel, Australia, Sao Tome and Principe, Canada, Spain, Netherlands, Czechia
Hyaluronidase is an enzyme used in laboratory settings. It functions by breaking down hyaluronic acid, a component of the extracellular matrix.
Sourced in United States, Switzerland, Germany, China, United Kingdom, Canada, Israel, Macao, Sao Tome and Principe, Japan
The HCG (Human Chorionic Gonadotropin) is a laboratory equipment product by Merck Group. It is a hormone typically used in various diagnostic and research applications. The core function of HCG is to detect and measure the levels of this hormone in biological samples.
Sourced in United States
M16 medium is a culture medium used for the isolation and cultivation of microorganisms. It provides the necessary nutrients and growth factors for the growth and maintenance of microbial cultures in a laboratory setting.
Sourced in United States, China, United Kingdom, Germany, Australia, Japan, Canada, Italy, France, Switzerland, New Zealand, Brazil, Belgium, India, Spain, Israel, Austria, Poland, Ireland, Sweden, Macao, Netherlands, Denmark, Cameroon, Singapore, Portugal, Argentina, Holy See (Vatican City State), Morocco, Uruguay, Mexico, Thailand, Sao Tome and Principe, Hungary, Panama, Hong Kong, Norway, United Arab Emirates, Czechia, Russian Federation, Chile, Moldova, Republic of, Gabon, Palestine, State of, Saudi Arabia, Senegal
Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
Sourced in United States, United Kingdom, Germany
KSOM medium is a synthetic culture medium designed for the in vitro culture of mammalian embryos. It provides a defined and optimized environment for the growth and development of early-stage embryos.
Sourced in United States
The MMESSAGE mMACHINE T7 Ultra Kit is a laboratory equipment product designed for in vitro transcription of RNA. It provides a system for efficient and reliable synthesis of high-quality RNA transcripts from DNA templates.
Sourced in United States
The MEGAshortscript T7 kit is a tool designed for in vitro transcription of short RNA sequences. It provides a simple and efficient method for generating small RNA molecules from DNA templates using the T7 RNA polymerase system.
Sourced in Germany, United States, China
The FemtoJet is a microinjection system designed for precise and controlled delivery of small liquid volumes into cells. It provides a reliable and precise method for introducing substances, such as proteins, nucleic acids, or small molecules, into individual cells. The FemtoJet allows for fine-tuned control over the injection parameters, enabling users to optimize the procedure for their specific applications.
Sourced in United States, United Kingdom, Germany, China, Canada, Japan, Italy, France, Belgium, Australia, Uruguay, Switzerland, Israel, India, Spain, Denmark, Morocco, Austria, Brazil, Ireland, Netherlands, Montenegro, Poland
Matrigel is a solubilized basement membrane preparation extracted from the Engelbreth-Holm-Swarm (EHS) mouse sarcoma, a tumor rich in extracellular matrix proteins. It is widely used as a substrate for the in vitro cultivation of cells, particularly those that require a more physiologically relevant microenvironment for growth and differentiation.

More about "Zygote"

Zygote, the initial cell formed by the union of a sperm and an egg, contains a complete set of genetic material and marks the first stage of embryonic development.
These early-stage cells are crucial for understanding cell division and differentiation processes.
Researchers can utilize various mediums, such as M2, M16, and KSOM, to culture and sustain zygotes in vitro.
Hyaluronidase and HCG are also commonly used in zygote research to facilitate fertilization and support early embryonic development.
Matrigel, a basement membrane extract, provides a suitable extracellular matrix for zygote and embryo culture.
Additionally, transcription kits like MMESSAGE mMACHINE T7 Ultra and MEGAshortscript T7 enable the synthesis of mRNA for microinjection into zygotes.
Microinjection tools, such as the FemtoJet, allow for precise manipulation of zygotes during experimentation.
By leveraging these techniques and tools, researchers can gain valuable insights into the early stages of life and enhance the reproducibility and accuracy of their zygote-related studies.
PubCompare.ai can help locate the best protocols from literature, pre-prints, and patents, empowering researchers to optimize their zygote experiments and drive advancements in this critical field of study.