For creating a CEPIA library, we cloned cfGCaMP2 (GCaMP2 with amino-acid substitutions of M36L in CaM, and N105Y and E124V in circular permutated enhanced GFP (cpEGFP)) with ER retention signal sequence (SEKDEL) into a bacterial expression vector, pET19b (Novagen, USA), using primers 1 and 2 (
Supplementary Table 2). G-GECO1.1, R-GECO1 and GEM-GECO1 were also cloned into pET19b using primers 3 and 4. The CaM sequences in G-GECO1.1, R-GECO1 and GEM-GECO1 were swapped with that in cfGCaMP2 variants using primer 4–7. Site-directed mutagenesis was performed by PCR using primers 8–36.
For mammalian expression of CEPIA variants in the ER and mitochondria, we cloned CEPIA into pCMV/myc/ER and pCMV/myc/mito vector (Invitrogen, USA) using primers 3, 4 and 37–39. For mitochondrial Ca
2+ imaging, we enhanced the specificity of mitochondrial localization by attaching the mitochondria targeting sequences in tandem40 (
link) to CEPIA2–4
mt, R-GECO1
mt and GEM-GECO1
mt using primers 40–47. To enhance protein expression, GEM-CEPIA1
er was cloned into the CAG promoter-containing vector, pCIS, using primers 48 and 49. To express G-CEPIA1
er in the Purkinje cells, G-CEPIA1
er was cloned into pSinRep5 (Invitrogen) using primers 50–53. To localize EGFP and mCherry in the ER, EGFP and mCherry were cloned in the pcDNA3 D1ER19 (
link) to attach calreticulin signal sequence using primers 54–59. To construct EYFP-
er, EYFP was cloned from pcDNA3-YC4er13 (
link) into pCMV/myc/ER vector using primers 60 and 61. To construct SypHer-dmito, we added an amino-acid substitution of C199S (ref. 62 (
link)) in pHyper-dmito (Evrogen, Russia) using primers 62 and 63. To construct mCherry-STIM1, STIM1 was cloned from pApuro-GFP-STIM1 (ref. 63 (
link)) into pShuttle2 vector using primers 60 and 64–66.
Suzuki J., Kanemaru K., Ishii K., Ohkura M., Okubo Y, & Iino M. (2014). Imaging intraorganellar Ca2+ at subcellular resolution using CEPIA. Nature Communications, 5, 4153.