In order to illustrate the utility of LD Hub, we conduct an analysis using summary results data from a large GWAS of atopic dermatitis (AD) for 40,835 (10,788 cases and 30,047 controls, sample prevalence: 0.264) individuals of European ancestry (i.e. the whole discovery set except 23andMe results) (Paternoster et al, 2015 (link)). In total, 11,059,640 SNPs were included in this meta-analysis. Since AD is influenced by a gene of major effect, i.e. filaggrin- variants in this region have allelic odds ratios > 7 (Sandilands et al, 2007 (link)), which could bias estimates from LD Hub, we excluded this region from the uploaded results file. For traits/diseases that have a single locus of disproportionately large effect (i.e. χ2 > 80) compared to the rest of the genome, we recommend the exclusion of SNPs in these regions as good practice when using LD Hub (and LD score regression in general), since the inclusion of these SNPs could unduly leverage the regressions and consequently the estimates of genetic correlations and SNP heritability. However, with the exception of autoimmune diseases (SNPs in the MHC can have large effects on certain autoimmune diseases), it is unusual for common traits/diseases to exhibit a single locus of large effect, and thus this potential source of bias should not be an issue for a majority of diseases/traits. For traits that exhibit a single locus of disproportionately large effect (χ2>80), we recommend fine-mapping and direct evaluation of overlap in the particular region to assess whether genetic effects are shared, and LD score regression of the rest of the genome with this particular region excluded from analyses. After the abovementioned quality control steps, 1,215,002 SNPs were selected for upload.
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Filaggrin Proteins
Filaggrin Proteins
Filaggrin Proteins are a family of proteins found in the epidermis of the skin, playing a crucial role in the formation of the skin's protective barrier.
These proteins help organize and aggregate keratin filaments, contributing to the structural integrity of the stratum corneum.
Filaggrin Proteins are essential for maintaining skin hydration and preventing transepidermal water loss.
Defficiencies or mutations in Filaggrin Proteins have been linked to various skin disorders, such as atopic dermatitis and ichthyosis vulgaris.
Understanding the function and regulation of Filaggrin Proteins is crucial for developing effective treatments and therapies for these conditions.
Reserchers can leverage PubCompare.ai's AI-driven platform to optimize their research protocols and identify the most accurate and reproducible methods for studying Filaggrin Proteins, advancing the fuuture of scientific discovery in this important field.
These proteins help organize and aggregate keratin filaments, contributing to the structural integrity of the stratum corneum.
Filaggrin Proteins are essential for maintaining skin hydration and preventing transepidermal water loss.
Defficiencies or mutations in Filaggrin Proteins have been linked to various skin disorders, such as atopic dermatitis and ichthyosis vulgaris.
Understanding the function and regulation of Filaggrin Proteins is crucial for developing effective treatments and therapies for these conditions.
Reserchers can leverage PubCompare.ai's AI-driven platform to optimize their research protocols and identify the most accurate and reproducible methods for studying Filaggrin Proteins, advancing the fuuture of scientific discovery in this important field.
Most cited protocols related to «Filaggrin Proteins»
Alleles
Autoimmune Diseases
Eczema
Europeans
Filaggrin Proteins
Genes
Genome
Genome-Wide Association Study
Reproduction
Single Nucleotide Polymorphism
For routine histology, tissues were fixed in Bouin's fixative, processed, and embedded in paraffin. Sections (5 μm) were stained with hematoxylin and eosin and examined and photographed using an Axiophot microscope (Carl Zeiss, Inc.). For immunofluorescence, frozen sections of tissues or cells on the glass coverslips were fixed in 4% paraformaldehyde in PBS for 10 min and were subjected to indirect immunostaining (DasGupta and Fuchs 1999 ) and analyzed using a confocal microscope LSM 410 (Carl Zeiss, Inc.).
Unless otherwise indicated, primary antibodies were polyclonal and raised in rabbits. Antibodies and dilutions used were: rat monoclonal β1 (1:100), α3 (1:100), rat monoclonal α4 (1:50), rat monoclonal α6 (1:100) (Chemicon); K1 (1:200), loricrin (1:250), filaggrin (1:2000) (BabCo); laminin (1:200), mouse monoclonal Ki67 (1:100) (Sigma-Aldrich); K17 (1:1000; gift of P. Coulombe, Johns Hopkins University School of Medicine, Baltimore, MD); guinea pig polyclonal K5 (1:300); and Lef1 (1:250). Fluorescence-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories. DAPI was used to stain nuclei.
Unless otherwise indicated, primary antibodies were polyclonal and raised in rabbits. Antibodies and dilutions used were: rat monoclonal β1 (1:100), α3 (1:100), rat monoclonal α4 (1:50), rat monoclonal α6 (1:100) (Chemicon); K1 (1:200), loricrin (1:250), filaggrin (1:2000) (BabCo); laminin (1:200), mouse monoclonal Ki67 (1:100) (Sigma-Aldrich); K17 (1:1000; gift of P. Coulombe, Johns Hopkins University School of Medicine, Baltimore, MD); guinea pig polyclonal K5 (1:300); and Lef1 (1:250). Fluorescence-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories. DAPI was used to stain nuclei.
Antibodies
Cavia
Cell Nucleus
Cells
DAPI
Eosin
Filaggrin Proteins
Fixatives
Fluorescent Antibody Technique
Frozen Sections
Laminin
LEF1 protein, human
loricrin
Mice, House
Microscopy
Microscopy, Confocal
Oryctolagus cuniculus
Paraffin Embedding
paraform
Stains
Technique, Dilution
Tissues
Once obtained, each sample was divided in three fragments, which were fixed, respectively, in 4.0% w/v neutral buffered formaldehyde (for light microscopy, histochemistry and immunohistochemistry for Melan-A, CD1A, Smoothelin, SMA-ACT, CD-31 and D2-40), methacarn fixative consisting of 60% methanol, 30% chloroform and 10% glacial acetic acid (for immunohistochemistry for CK5/6, CK7, CK10, CK20, claudin-1, DSPK 1-2, involucrin, filaggrin, laminin, collagen types I, III and IV, decorin, biglycan and versican) and 2.5% glutaraldehyde (for electron microscopy). Samples fixed in formaldehyde or methacarn were embedded in paraffin, and 5 µm tissue sections were obtained for hematoxylin and eosin (H&E) staining using routine methods. H&E stained sections were photographed using a Nikon Eclipse 90i light microscope (Nikon Corp., Tokyo, Japan) and thickness of each epithelial stratum was quantified in each sample using a scale as a reference. For this purpose, 30 equidistant vertical lines were drawn in each histological image using a predesigned template, and height of each cell layer was assessed at each point. This way, both the rete ridges and the papillae were measured and the average of all 30 measured was calculated.
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Acetic Acid
BGN protein, human
CD1a antigen
Cells
Chloroform
Claudin-1
Collagen Type I
DCN protein, human
Electron Microscopy
Eosin
Filaggrin Proteins
Fixatives
Formaldehyde
Glutaral
Histocytochemistry
Immunohistochemistry
involucrin
KRT20 protein, human
Laminin
Light Microscopy
MART-1 Antigen
methacarn
Methanol
Paraffin Embedding
Tissues
Versicans
To evaluate epidermal thickening, the ear and dorsal skin of each mouse was obtained on day 21 and fixed in 10% neutral buffered formalin. Tissues were embedded in paraffin and sliced into 5-μm-thick sections. Sections were then transferred to probe-on-plus slides (Thermo Scientific, Carlsbad, CA, USA), and deparaffinized skin sections were stained with H&E. Mast cells in the skin were stained with toluidine blue. Some sections were stained for immunohistochemical markers using anti-filaggrin (1:1000; ab24584; Abcam), anti-involucrin (1:1000; ab68; Abcam), anti-loricrin (1:1000, ab85679, Abcam), anti-occludin (1:1000; 33-1500; Invitrogen), anti-PAR-2 (1:100; sc-8205, Santa Cruz Biotechnology), and anti-TSLP (1:500; NB110-55234; Novus Biologicals) antibodies. The staining procedure was performed with an Ultravision Quanto Detection System (TL-060-QHD; Thermo Scientific). The slices were washed with PBS, dehydrated and mounted in Permount (SP15-100, Thermo Scientific). All stained sections were then examined by light microscopy (DM750, Leica, Wetzlar, Germany) to assess histological changes. Morphometric analysis (immunostained area of the epidermis to each analyzed protein in relation to total area of the epidermis) was performed using ImageJ 1.51 software (National Institutes of Health, Bethesda, MD, USA). All histological examinations were analyzed in 3 sections/animal slices.
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Animals
Antibodies
Biological Factors
Epidermis
Filaggrin Proteins
Formalin
involucrin
Light Microscopy
loricrin
Mast Cell
Mus
Novus
Occludin
Paraffin Embedding
Physical Examination
Proteins
Skin
Tissues
Tolonium Chloride
alpha-Enolase
Antigens
Arginine
B-Lymphocytes
Biotin
CFC1 protein, human
Cyclization
Filaggrin Proteins
Homo sapiens
NR4A2 protein, human
Peptides
Protein Targeting, Cellular
Streptavidin
Most recents protocols related to «Filaggrin Proteins»
To quantify the level of expression of the proteins filaggrin and transglutaminase 3, the Protein Simple Wes capillary-based automated immunoassays platform was used (24 (link)). RHE were treated as previously described for morphology and permeability experiments (see above Materials and Methods, Reconstructed human epidermis treatment). For these experiments, in addition to sterile water and mDixon + SQ 2%, M. restricta 24 h supernatant B was used and the SQOOH concentration was adapted accordingly to 193 ng/ml in mDixon + SQ 2%, MDA at 60 ng/ml in mDixon + SQ 2%, and SQOOH at 193 ng/ml + MDA at 60 ng/ml in mDixon + SQ 2%. Each solution was applied in triplicate. Samples were lysed using a specific buffer with Precellys® lysing kits (Bertin Technologies) designed for soft tissue homogenizing and dosed by bicinchoninic acid (BCA) assay. Diluted protein lysate was mixed with fluorescent master mix and heated at 37°C for 10 min. The plate was loaded into the instrument (WES, Protein Simple) and protein was drawn into individual capillaries on a 25-capillary cassette (12-230 kDa or 66-440 kDa) provided by the manufacturer (SM-W001). Proteins of interest were immunodetected with primary antibodies targeting FLG or TGM3 and peroxidase-conjugated secondary antibodies (Goat anti-Mouse or Rabbit IgG-HRP). Signals were normalized to cofilin immunodetection.
Actin Depolymerizing Factors
Antibodies
bicinchoninic acid
Biological Assay
Buffers
Capillaries
Epidermis
Filaggrin Proteins
Goat
Homo sapiens
IGG-horseradish peroxidase
Immunoassay
Mus
Permeability
Peroxidase
Proteins
Rabbits
Sterility, Reproductive
Tissues
Transglutaminases
AD severity was evaluate clinically using SCORing Atopic Dermatitis (SCORAD) (31 (link)). Skin barrier integrity was quantified using transepidermal water loss (TEWL) as measured on lesional skin using the DermaLab TEWL probe (Cortex Technology, Hadsund, Denmark). Skin barrier dysfunction was quantified by expression of filaggrin (FLG) from lesional keratinocytes normalized to the expression of the 18S rRNA, as described previously (2 (link), 32 (link)).
Cortex, Cerebral
Eczema
Filaggrin Proteins
Keratinocyte
RNA, Ribosomal, 18S
Skin
Extracts of a skin sample or HaCaT cells were prepared and then centrifuged at 12,000 × g to precipitate the insoluble materials. The supernatant was retained and the concentration of protein in the supernatant was measured by a BCA Protein Assay Kit (Beyotime, Jiangsu, China). A sample of supernatant was resolved by SDS-PAGE using a 12% gel. The protein bands in the gel were transferred to a polyvinylidene difluoride (PVDF) membrane and blocked with 5% skim milk, followed by overnight incubation with anti-Filaggrin, anti-Involucrin, anti-PPARα, anti-PPARγ, anti-LXR (Proteintech, Chicago, IL, United States), or anti-ABCA1 (Absin, Shanghai, China). After that, the blot was washed and incubated with the appropriate secondary antibody (Cell Signaling Technology, Beverly, MA, United States). Finally, the blot was subjected to a detection assay using a chemiluminescence substrate (Pierce, Rockford, IL, United States), and images of the blot were acquired using an Amersham Imager (GE Healthcare Biosciences, Pittsburgh, PA, United States).
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ABCA1 protein, human
Biological Assay
Chemiluminescence
Filaggrin Proteins
HaCaT Cells
Immunoglobulins
involucrin
Milk, Cow's
polyvinylidene fluoride
PPAR gamma
Proteins
SDS-PAGE
Skin
Staphylococcal Protein A
Tissue, Membrane
The fixed slices were treated with 3% H2O2 and then blocked with 5% BSA. The specimens were finally incubated with anti-Filaggrin (Santa Cruz, California, United States) or anti-Involucrin (1: 500; Absin, Shanghai, China) antibody overnight at 4°C, and then incubated with horseradish peroxidase-conjugated secondary antibody at 37°C for 4 h followed by reaction with 3,3-diaminobenzidine (DAB).
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Filaggrin Proteins
Horseradish Peroxidase
Immunoglobulins
involucrin
Peroxide, Hydrogen
The presence of ECM and BM-related proteins was assessed with fluorescent confocal microscopy. The constructs and grafts were fixed in 4% paraformaldehyde in phosphate-buffered saline (PBS) overnight at 4°C, then transferred to a 30% sucrose solution for 24 hours at 4°C, and lastly embedded in optimal cutting temperature (O.C.T.) compound for cryosectioning (section thickness = 16 μm). For immunofluorescent staining, the slides were dried overnight at room temperature in the dark, then permeabilized with 0.1% Triton X, blocked with 8% bovine serum albumin and 5% donkey serum in PBS for 1 hour, and incubated overnight at 4°C with the following antibodies: keratin 14 (BioLegend, #906004), involucrin (Abcam, #ab27495), human-specific involucrin (Abcam, #ab68), loricrin (Abcam, #ab198994), filaggrin (Abcam, #ab221155), desmoglein 1 (Progen, #651111), desmoglein 3 (Invitrogen, #326300), collagen type I (Abcam, #ab6308), collagen type III (Abcam, #ab6310), collagen type IV (Abcam, #ab6586), collagen type VII (Abcam, #ab6312), collagen type XVIII (Santa Cruz Biotechnology, #sc32720), CD90 (BioLegend, #328110), FAP (R&D Systems, #AF3715-SP), smooth muscle actin (Abcam, #ab5694), fibronectin (Santa Cruz Biotechnology, #sc-73611), laminin α5 (EMD Millipore, #MABT39), nidogen (Abcam, #ab254325), elastin (Abcam, #ab21610), Ki67 (Abcam, #ab16667), and cleaved caspase 3 (Cell Signaling Technology, #9664). Different combinations of Alexa Fluor Plus secondary antibodies (Invitrogen) were used to detect the primary antibodies. Nuclei were stained with 4′,6-diamidino-2-phenylindole. Staining of the F-actin fibers was performed using phalloidin conjugated with Alexa Fluor 594 (Invitrogen, #A12381). Hyaluronic acid was stained using biotinylated versican G1 domain (Amsbio, #AMS.HKD-BC41) and Alexa Fluor 555–conjugated streptavidin (Invitrogen, S21381). To differentiate human and murine vasculature in tissue sections, we simultaneously stained the ECs with an anti-CD31 antibody (Abcam, #ab28364) directed both against human and mouse and with griffonia simplicifolia lectin I isolectin B4, DyLight 594 (Vector Laboratories, #DL-1207-.5), which stains the endothelium of several nonprimate animals including mice. 3D imaging of the vasculature was performed through whole-mount staining following the same protocol described for the tissue sections, with the exception of using 0.1% Triton X in all the staining and washing solutions. Anti-CD31 (Abcam, #ab28364) and anti-vimentin (Santa Cruz Biotechnology, #sc-6260) were used as primary antibodies. The tissue was cleared using Ce3D Tissue Clearing solution (BioLegend, #427704) for 20 min on a rocking platform before proceeding with the imaging. TUNEL assay for the detection of DNA fragmentation was performed on frozen sections of the grafts using Click-iT TUNEL Alexa Fluor 647 Imaging Assays for Microscopy & HCS (Thermo Fisher Scientific, #C10247) following the manufacturer’s recommendation. The images were acquired using a Leica Stellaris 5 (Leica, Germany). Three biological replicates were analyzed for each time point and sample.
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Actins
Alexa594
Alexa Fluor 555
Alexa Fluor 647
Animals
Antibodies
Antibodies, Anti-Idiotypic
Biological Assay
Biopharmaceuticals
Caspase 3
Cell Nucleus
Cloning Vectors
Collagen Type I
Collagen Type III
Collagen Type IV
Collagen Type VII
Collagen Type XVIII
Desmoglein 1
Desmoglein 3
DNA Fragmentation
Elastin
Endothelium
Equus asinus
F-Actin
Fibronectins
Filaggrin Proteins
Fluorescent Antibody Technique
Frozen Sections
Grafts
Griffonia simplicifolia lectin I
Homo sapiens
Hyaluronic acid
In Situ Nick-End Labeling
involucrin
Isolectins
Keratin-14
Laminin
loricrin
Microscopy
Microscopy, Confocal
Mus
nidogen
paraform
Phalloidine
Phosphates
Progens
Proteins
Saline Solution
Serum
Serum Albumin, Bovine
Smooth Muscles
Streptavidin
Sucrose
Thy-1 Antigens
Tissues
Versicans
Vimentin
Top products related to «Filaggrin Proteins»
Sourced in United States, United Kingdom
Filaggrin is a structural protein that plays a crucial role in the formation and maintenance of the skin barrier. It aggregates keratin filaments, contributing to the mechanical strength and water-holding capacity of the skin.
Sourced in United States
Filaggrin is a protein that plays a crucial role in the structure and function of the skin's outer layer, the stratum corneum. It is responsible for aggregating and aligning keratin filaments, which contribute to the formation of the skin's protective barrier. Filaggrin is essential for the skin's moisture retention and barrier function.
Sourced in United States
Filaggrin is a protein that plays a key role in the formation and function of the skin's protective barrier. It is a crucial component of the stratum corneum, the outermost layer of the epidermis. Filaggrin helps to aggregate and align keratin filaments, contributing to the structural integrity and water-holding capacity of the skin.
Sourced in United Kingdom, United States
Anti-filaggrin is a primary antibody that specifically binds to the filaggrin protein. Filaggrin is a structural protein involved in the formation of the skin's cornified envelope. This antibody can be used in various laboratory techniques to detect and study the filaggrin protein.
Sourced in United Kingdom
Sc-66192 is a laboratory reagent manufactured by Santa Cruz Biotechnology. It is designed for use in various research applications involving biochemical analyses and experiments.
Sourced in Japan, United States
Filaggrin is a structural protein that plays a crucial role in the formation and organization of the stratum corneum, the outermost layer of the skin. It is involved in the aggregation and alignment of keratin filaments, contributing to the integrity and barrier function of the skin.
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The IScript cDNA Synthesis Kit is a reagent kit used for the reverse transcription of RNA into complementary DNA (cDNA). The kit contains all the necessary components to perform this reaction, including a reverse transcriptase enzyme, reaction buffer, and oligo(dT) primers.
Sourced in United States
Involucrin is a structural protein found in the upper layers of the epidermis. It is a key component of the cornified envelope, which provides mechanical and barrier functions to the skin. Involucrin contributes to the formation of the protective barrier that helps maintain skin integrity.
Sourced in United States, United Kingdom
Loricrin is a laboratory equipment designed for the analysis and detection of specific proteins. It functions as a diagnostic tool, enabling researchers and scientists to identify and quantify target proteins in various samples.
Sourced in United States, United Kingdom
Anti-filaggrin is a laboratory reagent used for the detection and quantification of the filaggrin protein. Filaggrin is a key structural protein involved in the formation of the skin's protective barrier. Anti-filaggrin can be utilized in various immunoassay techniques to measure filaggrin levels in biological samples.
More about "Filaggrin Proteins"
Filaggrin, a crucial player in skin barrier function, is a family of proteins found in the epidermis of the skin.
These proteins play a vital role in the formation and maintenance of the skin's protective barrier, helping to organize and aggregate keratin filaments and contributing to the structural integrity of the stratum corneum.
Filaggrin proteins are essential for maintaining skin hydration and preventing transepidermal water loss, making them crucial for skin health and function.
Deficiencies or mutations in Filaggrin proteins have been linked to various skin disorders, such as atopic dermatitis (also known as eczema) and ichthyosis vulgaris.
Understanding the function and regulation of Filaggrin proteins is crucial for developing effective treatments and therapies for these conditions.
Researchers can leverage PubCompare.ai's AI-driven platform to optimize their research protocols and identify the most accurate and reproducible methods for studying Filaggrin proteins, advancing the fuuture of scientific discovery in this important field.
The platform can help researchers find the best protocols and products, including the IScript cDNA synthesis kit, to study Filaggrin and related proteins like Involucrin and Loricrin, which are also important for skin barrier function.
By using PubCompare.ai, researchers can easily identify the most reliable and effective research methods, ultimately leading to breakthroughs in understanding and treating skin conditions associated with Filaggrin deficiencies or mutations, such as atopic dermatitis and ichthyosis vulgaris.
Explore the fuuture of scientific discovery with PubCompare.ai and unlock the full potential of your Filaggrin research.
These proteins play a vital role in the formation and maintenance of the skin's protective barrier, helping to organize and aggregate keratin filaments and contributing to the structural integrity of the stratum corneum.
Filaggrin proteins are essential for maintaining skin hydration and preventing transepidermal water loss, making them crucial for skin health and function.
Deficiencies or mutations in Filaggrin proteins have been linked to various skin disorders, such as atopic dermatitis (also known as eczema) and ichthyosis vulgaris.
Understanding the function and regulation of Filaggrin proteins is crucial for developing effective treatments and therapies for these conditions.
Researchers can leverage PubCompare.ai's AI-driven platform to optimize their research protocols and identify the most accurate and reproducible methods for studying Filaggrin proteins, advancing the fuuture of scientific discovery in this important field.
The platform can help researchers find the best protocols and products, including the IScript cDNA synthesis kit, to study Filaggrin and related proteins like Involucrin and Loricrin, which are also important for skin barrier function.
By using PubCompare.ai, researchers can easily identify the most reliable and effective research methods, ultimately leading to breakthroughs in understanding and treating skin conditions associated with Filaggrin deficiencies or mutations, such as atopic dermatitis and ichthyosis vulgaris.
Explore the fuuture of scientific discovery with PubCompare.ai and unlock the full potential of your Filaggrin research.