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Immunoglobulins

Immunoglobulins are a diverse class of glycoprotiens produced by B cells that function as antibodies.
They play a crucial role in the humoral immune response, binding to antigens and triggering downstream effector functions.
Immunoglobulins are categorized into different isotypes (IgA, IgD, IgE, IgG, IgM) based on their structural and functional properties.
Understanding the biology and applications of immunoglobulins is key for developing effective therapies and diagnostics.
PubCompare.ai's AI-powered tools can help researchers optimize their work with immunoglobulins, easily locating the best protocols and products from the literature with unparalled reproducibility and accurancy.

Most cited protocols related to «Immunoglobulins»

The streptavidin alkaline phosphatase method was adapted to detect the viral antigen using a polyclonal anti-ZIKV antibody produced at the Evandro Chagas Institute2 (link). The biotin-streptavidin peroxidase method was used for immunostaining of tissues with antibodies specific for each marker studied. First, the tissue samples were deparaffinized in xylene and hydrated in a decreasing ethanol series (90%, 80%, and 70%). Endogenous peroxidase was blocked by incubating the sections in 3% hydrogen peroxide for 45 min. Antigen retrieval was performed by incubation in citrate buffer, pH 6.0, or EDTA, pH 9.0, for 20 min at 90 °C. Nonspecific proteins were blocked by incubating the sections in 10% skim milk for 30 min. The histological sections were then incubated overnight with the primary antibodies diluted in 1% bovine serum albumin (Supplementary Table S1). After this period, the slides were immersed in 1 × PBS and incubated with the secondary biotinylated antibody (LSAB, DakoCytomation) in an oven for 30 min at 37 °C. The slides were again immersed in 1X PBS and incubated with streptavidin peroxidase (LSAB, DakoCytomation) for 30 min at 37 °C. The reactions were developed with 0.03% diaminobenzidine and 3% hydrogen peroxide as the chromogen solution. After this step, the slides were washed in distilled water and counterstained with Harris hematoxylin for 1 min. Finally, the sections were dehydrated in an increasing ethanol series and cleared in xylene.
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Publication 2018
Alkaline Phosphatase Antibodies Antibodies, Anti-Idiotypic Antigens Antigens, Viral azo rubin S Biotin Buffers Citrates Edetic Acid Ethanol Hematoxylin Immunoglobulins Milk, Cow's Peroxidase Peroxide, Hydrogen Peroxides Proteins Serum Albumin, Bovine Streptavidin Tissues Tritium Xylene Zika Virus
MCF-7, ZR75-1, T-47D and BT-474 human cell lines were obtained from ATCC and grown in the relevant media. TAM-R cells13 (link) were a kind gift from Dr Iain Hutcheson and Prof. Robert Nicholson (Cardiff). The ER+ breast cancer tumours were obtained from the Nottingham Tenovus primary breast cancer series, Addenbrooke’s Hospital and Imperial College Healthcare NHS Trust, London, UK with appropriate ethical approval from the repositories. The malignant pericardial effusion and the two distant metastases were obtained from Imperial College Healthcare NHS Trust, London, UK. For ChIP in the tumours and metastases, the frozen sample was cut into smaller pieces prior to ChIP, which was then performed as previously described16 . For the malignant pericardial effusion, epithelial cells were first enriched using Dynabeads conjugated with Epcam17 (link). For ChIPs from cell line material, proliferating cells were cross-linked and processed for ChIP as previously described16 . The antibodies used were anti-ER (sc-543) from Santa Cruz Biotechnologies and anti-FoxA1 (ab5089) from Abcam. Sequences generated by the Illumina Genome Analyzer were processed by the Illumina analysis pipeline version 1.6.1, and aligned to the Human Reference Genome (assembly hg18, NCBI Build 36.1, March 2008) using BWA version 0.5.518 . Differential binding analysis was performed using the DiffBind package19 . For immunohistochemical analyses, ER staining was conducted using the 6F11/2 mouse monoclonal antibody (Novocastra, Leica Microsystems, Bucks, UK) and FoxA1 staining was conducted using a rabbit polyclonal antibody (ab23738) from Abcam. An Allred scoring system was used to assess staining accounting for both staining intensity and the proportion of cells stained.
Publication 2011
Antibodies Breast Carcinoma Breast Neoplasm Cell Lines DNA Chips Effusion, Pericardial Epithelial Cells FOXA1 protein, human Freezing Genome Genome, Human Homo sapiens Immunoglobulins Malignant Neoplasms Monoclonal Antibodies Mus Neoplasm Metastasis Neoplasms Rabbits
All experimental procedures were approved by the Institutional Animal Care and Use Committee (IACUC) of Allen Institute for Brain Science in accordance with NIH guidelines. All characterization was done using adult mice around ages P56 or older. The mice that were characterized were in a mixed genetic background, containing 50–75% C57BL/6 background and the remainders of 129 or other backgrounds from the various Cre lines. For systematic characterization of fluorescent proteins either by their native fluorescence or IHC, perfused brains were cryosectioned using a tape transfer technique, sections were then DAPI stained directly or following antibody staining, and images were captured using automated fluorescent microscopy. Microtome sections of 100-μm thickness from perfused brains were used for confocal imaging of fluorescently labeled cells. For systematic characterization of gene expression by colorimetric ISH or DFISH, the Allen Institute established pipelines for tissue processing, probe hybridization, image capture and data processing were utilized. Informatics signal identification, mapping, and quantification used the Allen Mouse Brain Atlas spatial mapping platform24 (link), 29 . In this pipeline, image series are preprocessed (white-balanced and cropped), then registered to a three-dimensional informatics reference atlas of the C57BL/6J mouse brain28 . This registration enables data to be displayed in 2D sections or reconstructed 3D volumes.
Publication 2009
Acid Hybridizations, Nucleic Adult Brain Cells Colorimetry DAPI Fluorescence Gene Expression Genetic Background Immunoglobulins Institutional Animal Care and Use Committees Mice, Inbred C57BL Mice, Laboratory Microscopy Microtomy Proteins Tissues
The SWISS-MODEL Repository (39 (link)) (SMR, https://swissmodel.expasy.org/repository) is a database of automatically generated homology models for relevant model organisms and experimental structure information for all sequences in UniProtKB (34 (link)). Whenever a UniProtKB sequence is submitted to SWISS-MODEL, the generated model is automatically deposited into the SMR along with all data used to generate the model. Currently, the SMR contains 1 067 355 models from SWISS-MODEL and 129 416 structures from PDB with mapping to UniProtKB.
To facilitate exploration of available information on a given target protein, SWISS-MODEL provides cross-links to various other resources and databases. We include links to the RCSB (33 (link)), PDBsum (40 (link)), PDBe (41 (link)), CATH (42 (link)) and SwissDock (43 (link)). In addition, we also provide direct access to a specialised server for antibody modelling. The pre-screening of the target sequence has been extended in order to automatically identify whether an immunoglobulin sequence is present in the input. If a matching sequence signal is detected, data can be sent to the Prediction of Immunoglobulin Structure server PIGSPro (44–46 (link)) where the model of the antibody is generated according to the canonical structure method (47–49 (link)).
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Publication 2018
Immunoglobulins Proteins Signal Peptides
SpecificityFluorophoreCloneNote
CD3AF488UCHT110uL of antibody used
CD8APC-Cy7SK1
CD4AF700RPA-T4
CD57PEQA17A04
CD56APC5.1H11
CD103BV421Ber-ACT8
Integrin 7PEFIB504
CD49aAPCTS2/7BioLegend
CD43PECD43-10G7BioLegend
Gating conditions for each of the validation experiments are shown in Figures 4D and 4E.
Post sorting, samples were each split into quintuplicates, and then cleaned up with 2x SPRI. Samples were then brought into reverse transcription in an adaptation of SMARTseq2 (Picelli et al., 2014 (link)) and SCRB-seq (Soumillon et al., 2014 (link)) as described here: https://dx.doi.org/10.17504/protocols.io.nkgdctw.
The pooled library was sequenced on an Illumina Nextseq (50 R1, 8 index, 34 R2). Post base calling, samples were aligned using a wrapper for DropSeqTools against the human reference hg19 to generate RNA counts matrices.
To assess the agreement between single-cell datasets and bulk-sorted experiments, we examined the top DE genes separating our gated populations in the CITE-seq reference dataset. We next visualized the relative expression of these genes in the heatmaps in Figures 4D and 4E. The bulk-sorted populations exhibited highly concordant relative expression patterns for DE genes as we observed in CITE-seq data.
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Publication 2021
Acclimatization Dietary Fiber DNA Library Gene Expression Genes Homo sapiens Immunoglobulins Population Group Reverse Transcription

Most recents protocols related to «Immunoglobulins»

Example 14

The ability of anti-PD-L1 antibodies to modulate immune responsiveness was assessed using a mixed lymphocyte reaction (MLR). With this assay, the effects anti-PD-L1 antibodies on cell activation and the production of IL-2 were measured. The MLR was performed by culturing 105 purified human CD4+ cells from one donor with 104 monocyte derived dendritic cells prepared from another donor. To prepare the dendritic cells, purified monocytes were cultured with GM-CSF (1,000 U/ml) and IL-4 (500 U/ml) for seven days. Anti-PD-L1 or control antibodies were added to the allogeneic MLR cultures at 10 μg/ml unless stated otherwise. Parallel plates were set up to allow collection of supernatants at day 3 and at day 5 to measure IL-2 using a commercial ELISA kit (Biolegend). The antibodies used were the disclosed H6B1L, RSA1, RA3, RC5, SH1E2, SH1E4, SH1B11, and SH1C8 as compared to prior disclosed antibodies 10A5 (Bristol-Myers-Squibb/Medarex) and YW243.55S70 (Roche/Genentech) that were obtained via in-house production from prior-disclosed antibody sequences (U.S. Patent Application 2009/0055944 and U.S. Patent Application US 2010/0203056; the disclosure of which are incorporated by reference herein).

Production of IL-2 was enhanced by the addition of the anti-PD-L1 antibodies.

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Patent 2024
Anti-Antibodies Antibodies Antigens Binding Proteins Biological Assay CD274 protein, human Cells Dendritic Cells Enzyme-Linked Immunosorbent Assay Granulocyte-Macrophage Colony-Stimulating Factor Homo sapiens Immunoglobulins Lymphocyte Culture Test, Mixed Monocytes Tissue Donors

Example 3

Reactivity of the antibodies of the invention against several species of mesothelin (cyno, rat, mouse) was tested using assays well known in the art. The data is summarized in FIG. 4.

FACS binding assays were performed to evaluate the binding of the anti-Mesothlelin antibodies to murine, rat and cynomologous monkey mesothelin orthologues, using recombinant forms of the various receptors transiently expressed on 293T cells. FACs assays were performed by incubating hybridoma supernatants with 10,000 to 25,000 cells in PBS/2% Fetal bovine serum/2 mM Calcium Chloride at 4° C. for one hour followed by two washes with PBS/2% Fetal bovine serum/2 mM Calcium Chloride. Cells were then treated with florochrome-labeled secondary antibodies at 4° C. followed by one wash. The cells were resuspended in 50 μl of PBS/2% FBS and antibody binding was analyzed using a FACSCalibur™ instrument.

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Patent 2024
Anti-Antibodies Antibodies Biological Assay Calcium chloride Cells Cross Reactions HEK293 Cells Hybridomas Immunoglobulins Mesothelin Monkeys Mus
Not available on PMC !

Example 10

This example provides in vitro IC50 data for the blocking of the interaction between recombinant human PD-1 (PD-1-Fc Chimera; Sino Biologics) and human PD-L1 expressed CHO cells by anti-PD-L1 antibody G12. Here, CHO cells expressing PD-L1 were pre-incubated with G12 prior to the addition of rhPD-1-Fc chimeric protein. After incubation and washing, PD-1 binding to cell surface expressed PD-L1 was detected using an Alexa-Fluor 647 tagged anti-PD-1 antibody by flow cytometry (Intellicyt HTFC; FL-4H). This example shows that anti-PD-L1 monoclonal antibody G12 was able to inhibit efficiently the binding of PD-1 to PD-L1 expressed on the surface of CHO cells.

Results: As shown in FIG. 8 and Table 4, the IC50 for blocking of the PD-1/PD-L1 cellular interaction by G12 is 1.76E-09 M. Data was collected on the Intellicyt HTFC flow cytometer, processed using FlowJo software, and analyzed and plotted in Graph Pad Prizm using non-linear regression fit. Data points are shown as the median fluorescence detected in the FL-4H channel+/−Std Error.

TABLE 4
G12
Inhibition of PD-1/PD-L1CHO-PD-L1/1.76E−09
Interaction IC50 (M)rhPD-1-Fc

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Patent 2024
Alexa Fluor 647 Antibodies, Anti-Idiotypic Antigens Binding Proteins Biological Factors CD274 protein, human Cell Communication Cells Chimera CHO Cells Flow Cytometry Fluorescence Homo sapiens Immunoglobulins isononanoyl oxybenzene sulfonate Monoclonal Antibodies Proteins Psychological Inhibition

Example 12

As a proof of concept, the patient population of this study is patients that (1) have moderate to severe ulcerative colitis, regardless of extent, and (2) have had an insufficient response to a previous treatment, e.g., a conventional therapy (e.g., 5-ASA, corticosteroid, and/or immunosuppressant) or a FDA-approved treatment. In this placebo-controlled eight-week study, patients are randomized. All patient undergo a colonoscopy at the start of the study (baseline) and at week 8. Patients enrolled in the study are assessed for clinical status of disease by stool frequency, rectal bleeding, abdominal pain, physician's global assessment, and biomarker levels such as fecal calprotectin and hsCRP. The primary endpoint is a shift in endoscopy scores from Baseline to Week 8. Secondary and exploratory endpoints include safety and tolerability, change in rectal bleeding score, change in abdominal pain score, change in stool frequency, change in partial Mayo score, change in Mayo score, proportion of subjects achieving endoscopy remission, proportion of subjects achieving clinical remission, change in histology score, change in biomarkers of disease such as fecal calprotectin and hsCRP, level of adalimumab in the blood/tissue/stool, change in cytokine levels (e.g., TNFα, IL-6) in the blood and tissue.

FIG. 72 describes an exemplary process of what would occur in clinical practice, and when, where, and how the ingestible device will be used. Briefly, a patient displays symptoms of ulcerative colitis, including but not limited to: diarrhea, bloody stool, abdominal pain, high c-reactive protein (CRP), and/or high fecal calprotectin. A patient may or may not have undergone a colonoscopy with diagnosis of ulcerative colitis at this time. The patient's primary care physician refers the patient. The patient undergoes a colonoscopy with a biopsy, CT scan, and/or MRI. Based on this testing, the patient is diagnosed with ulcerative colitis. Most patients are diagnosed with ulcerative colitis by colonoscopy with biopsy. The severity based on clinical symptoms and endoscopic appearance, and the extent, based on the area of involvement on colonoscopy with or without CT/MRI is documented. Treatment is determined based on diagnosis, severity and extent.

For example, treatment for a patient that is diagnosed with ulcerative colitis is an ingestible device programmed to release a single bolus of a therapeutic agent, e.g., 40 mg adalimumab, in the cecum or proximal to the cecum. Prior to administration of the treatment, the patient is fasted overnight and is allowed to drink clear fluids. Four hours after swallowing the ingestible device, the patient can resume a normal diet. An ingestible device is swallowed at the same time each day. The ingestible device is not recovered.

In some embodiments, there may be two different ingestible devices: one including an induction dose (first 8 to 12 weeks) and a different ingestible device including a different dose or a different dosing interval.

In some examples, the ingestible device can include a mapping tool, which can be used after 8 to 12 weeks of induction therapy, to assess the response status (e.g., based on one or more of the following: drug level, drug antibody level, biomarker level, and mucosal healing status). Depending on the response status determined by the mapping tool, a subject may continue to receive an induction regimen or maintenance regimen of adalimumab.

In different clinical studies, the patients may be diagnosed with Crohn's disease and the ingestible devices (including adalimumab) can be programmed to release adalimumab in the cecum, or in both the cecum and transverse colon.

In different clinical studies, the patients may be diagnosed with illeocolonic Crohn's disease and the ingestible devices (including adalimumab) can be programmed to release adalimumab in the late jejunum or in the jejunum and transverse colon.

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Patent 2024
Abdominal Pain Adalimumab Adrenal Cortex Hormones Biological Markers Biopsy BLOOD Cecum Colonoscopy C Reactive Protein Crohn Disease Cytokine Diarrhea Diet Endoscopy Endoscopy, Gastrointestinal Feces Homo sapiens Immunoglobulins Immunosuppressive Agents Jejunum Leukocyte L1 Antigen Complex Medical Devices Mesalamine Mucous Membrane Neoadjuvant Therapy Patient Care Management Patients Pharmaceutical Preparations Placebos Primary Care Physicians Safety Therapeutics Tissues Transverse Colon Treatment Protocols Tumor Necrosis Factor-alpha Ulcerative Colitis X-Ray Computed Tomography

Example 49

The functional activity of compounds was determined in a cell line where p70S6K is constitutively activated. Test article was dissolved in DMSO to make a 10 μM stock. PathScan® Phospho-S6 Ribosomal Protein (Ser235/236) Sandwich ELISA Kit was purchased from Cell Signaling Technology. A549 lung cancer cell line, was purchased from American Type Culture Collection. A549 cells were grown in F-12K Medium supplemented with 10% FBS. 100 μg/mL penicillin and 100 μg/mL streptomycin were added to the culture media. Cultures were maintained at 37° C. in a humidified atmosphere of 5% CO2 and 95% air. 2.0×105 cells were seeded in each well of 12-well tissue culture plates for overnight. Cells were treated with DMSO or test article (starting at 100 μM, 10-dose with 3 fold dilution) for 3 hours. The cells were washed once with ice cold PBS and lysed with 1× cell lysis buffer. Cell lysates were collected and samples were added to the appropriate wells of the ELISA plate. Plate was incubated for overnight at 4° C. 100 μL of reconstituted Phospho-S6 Ribosomal Protein (Ser235/236) Detection Antibody was added to each well and the plate was incubated at 37° C. for 1 hour. Wells were washed and 100 μl of reconstituted HRP-Linked secondary antibody was added to each well. The plate was incubated for 30 minutes at 37° C. Wash procedure was repeated and 100 μL of TMB Substrate was added to each well. The plate was incubated for 10 minutes at 37° C. 100 μL of STOP Solution was added to each well and the absorbance was read at 460 nm using Envision 2104 Multilabel Reader (PerkinElmer, Santa Clara, CA). IC50 curves were plotted and IC50 values were calculated using the GraphPad Prism 4 program based on a sigmoidal dose-response equation.

TABLE 2
In vitro biological data for representative compounds of Formula
I-IX Unless otherwise noted, compounds that were tested had an IC50
of less than 50 μM in the S6K binding assay.
Example NumberS6K Binding Activity
1A
2B
3B
4A
5A
6A
7A
8A
9B
10B
11B
12C
13C
14C
15A
16A
17B
18A
19A
20A
21A
22C
23B
24A
25A
26C
27A
28C
29C
30C
31A
32A
33C
34C
35C
36C
37C
38A
39A
40A
41A

Unless otherwise noted, compounds that were tested had an IC50 of less than 50 μM in the S6K Binding assay. A=less than 0.05 μM; B=greater than 0.05 μM and less than 0.5 μM; C=greater than 0.5 μM and less than 10 μM;

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Patent 2024
A549 Cells Atmosphere Biological Assay Biopharmaceuticals Buffers Cell Lines Cells Cold Temperature Culture Media Enzyme-Linked Immunosorbent Assay Immunoglobulins Lung Cancer Penicillins prisma Psychological Inhibition Ribosomal Proteins Ribosomal Protein S6 Ribosomal Protein S6 Kinases, 70-kDa Streptomycin Sulfoxide, Dimethyl Technique, Dilution Tissues

Top products related to «Immunoglobulins»

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DAPI is a fluorescent dye that binds strongly to adenine-thymine (A-T) rich regions in DNA. It is commonly used as a nuclear counterstain in fluorescence microscopy to visualize and locate cell nuclei.
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Protease inhibitor cocktail is a laboratory reagent used to inhibit the activity of proteases, which are enzymes that break down proteins. It is commonly used in protein extraction and purification procedures to prevent protein degradation.
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More about "Immunoglobulins"

Immunoglobulins, also known as antibodies, are a diverse class of glycoproteins produced by B cells that play a crucial role in the humoral immune response.
These specialized proteins bind to antigens, triggering downstream effector functions to protect the body from harmful pathogens.
The different immunoglobulin isotypes (IgA, IgD, IgE, IgG, IgM) exhibit unique structural and functional properties, allowing them to perform specialized roles in the immune system.
Understanding the biology and applications of these versatile biomolecules is key for developing effective therapies and diagnostics.
Researchers can leverage PubCompare.ai's AI-powered tools to optimize their work with immunoglobulins.
These advanced solutions can help locate the best protocols and products from the literature, preprints, and patents with unparalleled reproducibility and accuracy.
By harnessing the power of artificial intelligence, scientists can identify the most reliable and effective immunoglobulin techniques, streamlining their research and unlocking new possibilities.
In addition to immunoglobulins, related biomolecules and techniques play a crucial role in immunological research.
PVDF membranes are commonly used for Western blotting to detect and quantify specific proteins, including immunoglobulins.
DAPI, a fluorescent dye, is often employed to stain and visualize cellular nuclei.
Bovine serum albumin (BSA) is a widely used blocking agent in immunoassays to prevent non-specific binding.
RIPA lysis buffer helps extract and solubilize proteins, including immunoglobulins, for further analysis.
Alexa Fluor 488, a fluorescent dye, can be used to label and track immunoglobulins and other proteins of interest.
Triton X-100, a non-ionic detergent, is often utilized to permeabilize cell membranes for intracellular staining of immunoglobulins.
Protease inhibitor cocktails help preserve the integrity of immunoglobulins and other proteins during sample preparation.
Finally, the BCA protein assay kit provides a reliable method for quantifying the concentration of immunoglobulins and other proteins in a sample.
By leveraging the insights and tools provided by PubCompare.ai, researchers can streamline their immunoglobulin-related research, leading to more efficient and accurate results.
This comprehensive understanding of immunoglobulins and related techniques can unlock new discoveries and advancements in the field of immunology and beyond.