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Ornithine Decarboxylase

Ornithine Decarboxylase is an enzyme that plays a key role in the synthesis of polyamines, which are essential for cell growth and proliferation.
This enzyme catalyzes the conversion of ornithine to putrescine, the precursor for other polyamines such as spermidine and spermine.
Ornithine Decarboxylase is closely linked to cellular proliferation and differentiation, making it an important target for research in areas such as cancer, immune function, and neurological disorders.
Understanding the regulation and activity of this enzyme can provide valuable insights into a variety of biological processes and disease states.

Most cited protocols related to «Ornithine Decarboxylase»

Total RNA of either three whole embryos or 10 animal caps per sample was extracted using the Absolutely RNA Microprep kit (Stratagene), and cDNA synthesis was carried out using random hexamer priming and the StrataScript Reverse Transcriptase. Quantitative RT–PCR was performed on the Mx3000P (Stratagene) using the Brilliant SYBR Green QPCR Master Mix (Stratagene). Measurements were performed in quadruplicates and normalized to the expression levels of ODC (Ornithine decarboxylase). Fold change values (x) were calculated using the following formula: x=2−ΔΔCt. Bars indicate standard deviations. The primer sequences were: α-Actin, fwd: TCCCTGTACGCTTCTGGTCGTA, rev: TCTCAAAGTCCAAAGCCACATA; Admp, fwd: GATGATGGAAGGAGAGGA, rev: TCATGTTCTGACCCAAAG; Chd, fwd: GTTGTACATTTGGTGGGAA, rev: ACTCAGATAAGAGCGATCA; Gsc, fwd: GCTGAT-TCCACCAGTGCCTCACCAG, rev: GGTCCTGTGCCTCCTCTTCCTCCTG; MyoD, fwd: AGGTCCAACTGCTCCGACGGCATGAA, rev: AGGAGAGAATCCAGTTGATGGAAACA; ODC, fwd: CAGCTAGCTGTGGTGTGG, rev: CAACATGGAAACTCACACC; Otx2, fwd: GGATGGATTTGTTACATCCGTC, rev: CACTCTCCGAGCTCACTTCCC; Rx2a, fwd: AGACTGGTGGCTATGGAG, rev: ATACCTGCACCCTGACTT; Szl, fwd: GTCTTCCTGC-TCCTCTGC, rev: AACAGGGAGCACAGGAAG; Vent1, fwd: TTCCCTTCAGCATGGT-TCAAC, rev: GCATCTCCTTGGCATATTTGG; Wnt8, fwd: TATCTGGAAGTTGCAGCA-TACA, rev: GCAGGCACTCTCGTCCCTCTGT. The PCR cycling conditions for 40 cycles were: denaturation at 95°C for 30 s, annealing at 55°C for 60 s, and extension at 72°C for 30 s.
Publication 2007
5-amino-5-deoxymannopyranoside Actins ADRB2 protein, human Anabolism Animals brilliant green DNA, Complementary Embryo Oligonucleotide Primers Ornithine Decarboxylase Reverse Transcriptase Polymerase Chain Reaction RNA-Directed DNA Polymerase
All template plasmids were obtained through Addgene (www.addgene.org). TOP-GFP was constructed by replacing the PGK promoter in the lentiviral vector pRRLSIN.cPPT.PGK-GFP. WPRE (Constructed in Didier Trono’s lab) with a 7xTCF/LEF optimal promoter cassette (7xTOP) from the M50 Super TOPFlash plasmid (17 (link)). To construct the double color vector TOP-GFP.mC, we inserted 4 additional TCF/LEF binding sites (GATCAAAGG) into a lentiviral TOP-dGFP reporter containing 3 such binding sites (18 (link)), yielding 7xTOP-dGFP. We then amplified this cassette using PCR and inserted it into the Hpa1 site of lentiviral PGK-H2BmCherry (19 (link)). To convert destabilized dGFP into enhanced eGFP, we used site directed mutagenesis (Stratagene) to insert a stop codon between GFP and the attached ornithine decarboxylase sequence, yielding lentiviral TOP-GFP.mC. To construct the control vectors FOP-GFP and FOP-GFP.mC, we replaced 7xTOP cassettes with synthetic 7xFOP cassettes (IDT-DNA), which carry mutated TCF/LEF binding sites (GgcCAAAGG). A mutant KRAS-expressing lentiviral vector UG2K was constructed by inserting KRASG12V from the pBabe K-Ras12V plasmid (20 (link)) into a pUltra lentiviral backbone (Constructed in Malcolm Moore’s lab) to yield lentiviral pUBC-GFP-P2A-KRASG12V (UG2K). Modified vector elements were verified by restriction analysis and sequencing.
Publication 2012
Binding Sites Cloning Vectors Codon, Terminator HPSE protein, human K-ras Genes Mutagenesis, Site-Directed Ornithine Decarboxylase Plasmids Vertebral Column
The tetracycline regulated bi-directional pBI-G vector (Clontech, Mountain View CA) was modified by removing the lacZ coding region, and replacing it with enhanced cyan fluorescent protein (CFP: subcloned from the pCX-ECFP vector). To shorten the half-live of CFP, and thus allow for a more dynamic read-out of transgene expression, the mouse ornithine decarboxylase PEST sequence was subcloned, in frame, to the 5′ end of CFP. The premiR132 sequence from the pCAG-miR132 vector [10] (link) was subcloned into the multiple cloning site of the pBI-CFP vector to generate the final TET-response element-controlled miR132-CFP vector. Dr. Hai-Ying M. Cheng performed the subcloning procedures: pronuclear injection of FVB/N oocytes with the linearized construct was performed Dr. Xin-An Pu, at the Ohio State University Transgenic Facility. Five lines were generated and analyzed for transgene expression by crossing to the CaMKII tTA driver line [22] . The line with the broadest neuroanatomical expression pattern was retained and backcrossed to the C57BL/6J mouse strain a minimum of 6 times. Of note, at no point were the animals administered with doxycycline. Thus the miR132 transgene was constitutively expressed. Thy-1 GFP mice [23] (link) were generously provided by Gouping Feng (Duke University).
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Publication 2010
Animals Animals, Transgenic Calmodulin-Dependent Protein Kinase II Cloning Vectors Doxycycline enhanced cyan fluorescent protein LacZ Genes Mice, Inbred C57BL Mice, Laboratory Ornithine Decarboxylase Ovum Plague Reading Frames Response Elements Strains Tetracycline Transgenes
To construct expression plasmids carrying Flag-tagged wild-type luciferase and ELuc, cDNA sequences in which the start codon was replaced by an EcoRV site were amplified by polymerase chain reaction (PCR) using pB1py311[5] (link) and pBlue-ELuc, respectively, as the templates. The amplified products were ligated into the EcoRV/KpnI (for wild-type luciferase) and EcoRV/XhoI (for ELuc) sites of pCMV-Tag2B (Stratagene) downstream of the immediate CMV promoter, which resulted in the pCMV-Flag::PTLuc and pCMV-Flag::ELuc constructs. pSV40-ELuc was generated by replacing the NcoI and XbaI fragment of the FLuc expression vector pGVC2 (Toyo Ink, Tokyo, Japan) with ELuc excised from the pBlue-ELuc plasmid. To generate destabilized luciferases in which the PEST element of the mouse ornithine decarboxylase was fused in-frame to the C-terminus of ELuc (dELuc) and FLuc (dFLuc), the PEST sequence (in which the NcoI site was deleted without changing the deduced amino acid sequence) was PCR-amplified using pd1EGFP-N1 (Clontech, Palo Alto, CA) as a template. To generate pGEM-PEST, the amplified fragment was subcloned into pGEM-TEasy (Promega, Madison, WI). ELuc and FLuc in which the stop codon was replaced by an EcoRV site were PCR-amplified using pBlue-ELuc and the pGVC2 as templates, respectively. The amplified fragments were ligated into the NcoI/EcoRV site of pGEM–PEST. To generate the pSV40–dELuc and pSV40–dFLuc constructs, PEST-fused ELuc (dELuc) and FLuc (dFLuc) were excised using NcoI and XbaI and ligated into the NcoI/XbaI site of pGVC2, in which the FLuc was removed.
To construct reporter vectors carrying the mPer2 promoter, the mPer2 promoter fragment (−279 to +112 bp, where +1 indicates the putative transcription start site) was PCR-amplified from C57BL/6J mouse genomic, and cloned into the NheI/XhoI site of pGL3–Basic (Promega). The FLuc was replaced with the NcoI and XbaI fragments of pSV40–dELuc and pSV40–dFLuc, resulting in mPer2-dELuc and mPer2-dFLuc, respectively.
To generate the cytosol-targeting ELuc expression vector pCMV-Flag::ELuc (cyto), the ELuc cDNA in which the peroxisome-targeting signal (PTS; Ser-Lys-Lue) at the extreme C-terminus was deleted by PCR using pBlue-ELuc as the template, and the product was ligated to the EcoRV/XhoI site of pCMV-Tag2B. To construct the peroxisome-targeting FLuc expression vector pCMV-Flag::FLuc (pox), the FLuc cDNA in which a PTS was introduced at the extreme C-terminus was PCR-amplified using pGVC2 as the template, and the product was ligated to the EcoRV/XhoI site of pCMV-Tag2B. To construct expression plasmids carrying nucleus-targeting ELuc and FLuc, the cDNA sequences in which the PTS of ELuc and the STOP codons of both luciferases were replaced by a NotI site, and were PCR-amplified using pBlue-ELuc and pGVC2 as templates, respectively. To obtain the pCMV-Myc::ELuc (nuc) and pCMV-Myc::FLuc (nuc) constructs, the amplified fragments were ligated into the NocI/NotI site of pCMV/myc/nuc (Invitrogen, Carlsbad, CA) in which a triple nuclear localization signal (NLS) from SV40 large T antigen was introduced downstream of the multiple cloning site, for C-terminal fusion to the luciferases.
For confocal fluorescence imaging analysis, we generated a peroxisome-targeting EGFP in which a PTS was introduced at the extreme C-terminus of EGFP. The EGFP cDNA was PCR-amplified using EGFP-N1 (Clontech) as a template, and the product was cloned into pcDNA3.1/V5-His TOPO (Invitrogen) to yield pCMV- EGFP (pox).
To construct an expression plasmid carrying ELuc::importin α, the ELuc cDNA in which the PTS and the STOP codon were replaced by an EcoRV site was PCR-amplified using pBlue-ELuc as a template, and the product was ligated into the HindIII/EcoRV site of pcDNA3 (Invitrogen). The importin α-coding sequence (mRch1, GeneBank accession number D55720) in which the start codon was replaced by an EcoRV site was PCR-amplified using pGEX-2T-PTAC58 [25] (link) (kind gift from Dr. Y. Yoneda of Osaka University) as a template, and the product was ligated to the EcoRV and XhoI sites downstream of ELuc to yield pCMV-ELuc:: importin α. All constructs were verified by sequencing.
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Publication 2010
Amino Acid Sequence Cell Nucleus Cloning Vectors Codon, Initiator Codon, Terminator Cytosol DNA, Complementary Genome Importins Large T-Antigen Luciferases Mice, Inbred C57BL Mus Nuclear Localization Signals Open Reading Frames Ornithine Decarboxylase Paragangliomas 3 Peroxisomal Targeting Signals Peroxisome Plague Plasmids Polymerase Chain Reaction Promega prostaglandin M Reading Frames Simian virus 40 Topotecan Transcription Initiation Site
For the genome data set, we included all of the type strains for Aeromonas with the exception A. cavernicola (50 (link)), as well as all other Aeromonas genomes deposited into public databases as of 17 July 2013. For the type strains, 2 were publically available and 27 were sequenced in-house. For additional strains, 21 were available publically and 6 were sequenced in-house. The bacteria were grown at the optimal growth temperature for the strain in LB broth or on LB agar (1.5%) plates for 16 to 18 h (60 ). For biochemical tests, API 20NE strips (bioMérieux, Marcy l’Etoile, France) were used in accordance with the manufacturer’s instructions. Separate tests for ornithine decarboxylase (ODC) activity and esculin hydrolysis were assessed using ODC broth and bile esculin agar (Sigma-Aldrich, St. Louis, MO). Tests were performed in triplicate.
Publication 2014
Aeromonas Agar Bacteria Bile Esculin Genome Hydrolysis Ornithine Decarboxylase Strains

Most recents protocols related to «Ornithine Decarboxylase»

A DNA fragment containing SV40 nuclear localization signal (nls) and a protein destabilization PEST signal from mouse ornithine decarboxylase (NP_038642.2; corresponding to aa 423–461) was synthesized (Integrated DNA Technologies, Inc.) and cloned into pAPLO (Poe et al. 2017 (link)). The superfolder GFP (sfGFP) coding sequence was PCR amplified from pIHEU-AV-sfGFP (Sapar et al. 2018 (link)), with syn21 (a translation enhancer), start codon, and SV40 nls in the forward primer, and cloned in-frame before SV40nls and PEST in pAPLO.
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Publication 2023
a protein, mouse Codon, Initiator DNA, A-Form Nuclear Localization Signals Oligonucleotide Primers Open Reading Frames Ornithine Decarboxylase Plague Reading Frames Simian virus 40
The demographic characteristics including age, sex, body mass index (BMI), habits (smoking and alcohol consumption), blood type (ABO and Rh), operative parameters including the type of liver graft resected, graft weight, remnant liver volume, postoperative complications requiring relaparotomy (such as bleeding and biliary peritonitis) and clinical variables including the routine laboratory parameters on preoperative and postoperative days (PODs) 1, 3, 5, 7, 10 and 21 were collected. Specific laboratory values including alfa-fetoprotein (AFP), des carboxy prothrombin (DCP), ornithine decarboxylase (ODC), retinol binding protein 4 (RBP4), and angiotensin converting enzyme isotype II (ACEII) levels were measured in the same time intervals.
All routine laboratory evaluations including liver function tests, complete blood count, and coagulation studies were obtained from the hospital database. The demographic and operative parameters were obtained from the electronic patient registry. Five milliliters of extra blood was drawn from the subjects and transferred to Inonu University Liver Transplant Institute Hepatology Research Laboratories and all the samples were centrifuged at 2000 rpm at 4 °C for 10 min and serum obtained from the blood samples were divided into four aliquots and stored at −80 °C until the experiments were performed. The comparison of these variables was performed according to different study subgroups; (i) the routine and specific laboratory variables were compared according to sex (male versus females); (ii) according to LDH type (right-lobe LDH versus left-lobe LDH (including left-lobe lateral segment)); and (iii) according to the presence or absence of complications requiring relaparotomy.
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Publication 2023
alpha-Fetoproteins Angiotensins Bile BLOOD Complete Blood Count Females Grafts Immunoglobulin Isotypes Index, Body Mass Liver Liver Function Tests Liver Transplantations Males Ornithine Decarboxylase Patients Peritonitis Postoperative Complications Prothrombin RBP4 protein, human Serum Test, Clinical Enzyme Tests, Blood Coagulation
The animal trial comprised 20 animals, with 10 animals being vaccinated twice with the recombinant Haemonchus vaccine at the 4-week interval and 10 animals serving as the control and receiving no treatment (Figure 1B and Table S1). The recombinant Haemonchus vaccine consisted of recombinant enolase, arginine kinase, ornithine decarboxylase, malate dehydrogenase, serly tRNA synthetase, macrophage inhibition factor-2, glutamyl tRNA synthetase, aspartyl tRNA synthetase, fatty acid synthetase thioesterase domain, transcriptional co-activator (the histone acetyltransferase-HAT-domain), and vacuolar ATPase, B subunit. All antigens were expressed in a bacterial expression system (data unpublished). The eleven recombinant proteins were combined and dialysed overnight at 4 °C. As described previously [41 (link)], the antigens were formulated in the QuilA and chitin-based slow-release formulation. Each lamb was subcutaneously vaccinated with 75 µg of the vaccine on each vaccination.
Two weeks after the second vaccination, all animals were infected with 5000 L3 H. contortus. Fecal egg counts were monitored twice weekly from day 16 post-infection until the end of the trial. Animals were bled and weighed weekly throughout the course of the trial. One control animal died because of an unrelated cause and was therefore not included in the sample collection or analysis. All 19 animals were killed 8 weeks post challenge, and abomasa were collected for the adult worm counts. Each abomasum was cut open, washed, and had 1/10 worms collected for worm counts. The remaining worms were collected as previously described [9 (link)]. Briefly, the abomasal contents were mixed 2:1 with 3% agar, and the solidified agar blocks incubated at 37 °C in a saline bath. Adult male H. contortus worms were collected from the saline soon after emergence and stored in cryovials in liquid N2 for subsequent DNA and RNA isolation.
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Publication 2023
Abomasum Acetyltransferase, Histone Adult Agar Amino Acyl-tRNA Synthetases Animals Antigens Arginine Kinase Aspartate-tRNA Ligase Bacteria Bath Chitin Enolase Fatty Acids Feces Glutamate-tRNA Ligase Haemonchus Helminths Infection isolation Ligase liposomal amphotericin B Macrophage Migration Inhibitory Factor Malate Dehydrogenase Males Ornithine Decarboxylase Protein Subunits Recombinant Proteins Saline Solution Secondary Immunization Specimen Collection Sustained-Release Preparations Transcription, Genetic Vaccines Vaccines, Recombinant Vacuolar H+-ATPase
Currently, phylogenetic tree analysis has become an important strategy for mining new functional enzymes. In order to enrich the ornithine decarboxylase in the putrescine synthesis pathway, we preliminarily screened the ornithine decarboxylase via phylogenetic tree and molecular docking. This method requires a protein sequence with a known function as a probe. Then, the candidate sequences were screened from the huge sequence information by analyzing the affinity of phylogenetic evolution. Finally, the screening range was further narrowed by molecular docking. Li et al., compared seven ODCs from different sources and found that the ODC from Enterobacter cloacae (SpeFECL) had the highest specific ODC activity in C. glutamicum [9 (link)]. Therefore, the amino acid sequence of SpeFECL was chosen as the probe sequence to mine more ODCs from the National Center for Biotechnology Information (NCBI) database. BlastP results with a candidate ODC sequence revealed similarities ranging from 50% to 90%. One ODC with a similarity of more than 90% was also kept. Some repeated or truncated sequences were removed, leaving 8245 candidate sequences for phylogenetic tree construction. A comparison file spec.fasta was generated by sequence matching of ODCs using MAFFT, and the final spec.tree file was generated by the FastTree construction of a maximum-likelihood phylogenetic tree. The crystal structure of Lactobacillus 30a ODC dimer (PDB:1ord) was used as a template by the modeling module function of SWISS-MODEL to obtain the model structure of the candidate sequences, and the pdb file was downloaded. The candidate protein model was docked onto the ornithine molecule with a radius of 12 using the semi-flexible docking software program CDOCKER in Discovery Studio 3.0. The A-chain active sites N153 (N161) and T387 (T395) were chosen, while the B-chain active sites H216 (H224) and Y652 (Y660) were chosen. To assess the reliability of the ligand-protein docking and binding stability, the total energies of the receptor and ligand -CE (-CDOCKER ENERGY) and the receptor–ligand interaction energy -CIE (-CDOCKER INTERACTION ENERGY) were used. The lower the CE value, the less total energy consumed during the docking process and the more stable the docking system. The lower the CIE value, the better the ligand–receptor interaction binding. ODCs with -CE or -CIE significantly higher than that of the probe enzyme were selected from the candidate sequences based on the energy ranking.
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Publication 2023
Amino Acid Sequence Biological Evolution Biosynthetic Pathways Enterobacter cloacae Enzymes Lactobacillus Ligands ODC1 protein, human Ornithine Ornithine Decarboxylase Proteins Putrescine Radius Trees
Schneider’s insect medium, lipopolysaccharide (LPS), IFN-γ, resazurin sodium salt, the ornithine decarboxylase (ODC) antibody and BHT (butylated hydroxytoluene) were all obtained from SIGMA-Aldrich (St Louis, MO, United States). Lactate Dehydrogenase (LDH) Cytotoxicity Detection Kit and Nutridoma™-SP supplement were obtained from Roche Diagnostics GmbH (Sandhofer Strasse, Mannheim, Germany). Inactive fetal bovine serum (FBS), RPMI 1640 medium and RPMI 1640 medium without phenol red and penicillin were purchased from GIBCO (Carlsbad, CA, United States). Streptomycin, L-glutamine and PBS 10x were obtained from Invitrogen (Carlsbad, CA, United States). The superoxide dismutase activity assay, NS398 COX-2 inhibitor and PGE2 Elisa kits were purchased from Cayman Chemical Company (Ann Arbor, Michigan, United States). The MILLIPLEX® kit based on Luminex® xMAP® technology was obtained from Merck (Darmstadt, Germany). A protease and phosphatase inhibitor cocktail, T-PERTM Tissue Protein Extraction Reagent and SuperSignal™ West Atto Ultimate Sensitivity Substrate Kit were purchased from ThermoFisher Scientific (Waltham, MA United States). Primary β-actin, pERK and ERK antibodies were obtained from Cell Signaling (Danvers, MA, United States), while Cox-2 and iNOS antibodies were purchased from Calbiochem (San Diego, CA, United States). The HO-1 antibody was purchased from Enzo Life Science (Farmingdale, NY, United States). Arginase antibody was obtained from R&D Systems (Minneapolis, MN, United States). Nrf2 antibody was obtained from Abcam (Cambridge, United Kingdom). Propylene glycol was purchased from Rudnik Comércio de Produtos Químicos Ltda. (Cotia, SP, BR). Carbomer 940 (Carbopol®) and sodium metabisulphite were obtained from Henrifarma Produtos Químicos (São Paulo, SP, BR). Potassium sorbate was purchased from Cosmoquímica Indl. E Coml. Ltda. (São Paulo, SP, BR). Disodium EDTA was obtained from Zílquimica Produtos para Laboratórios Ltda. (Ribeirão Preto, SP, BR). Castor oil was purchased from Volp Indústria e Comércio Ltda. (Osasco, SP, BR). Triethanolamine was obtained from Química Moderna Indústria e Comércio Eireli (Barueri, SP, BR).
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Publication 2023
Actins Aminomethyltransferase Antibodies Arginase Biological Assay Caimans carbomer 940 Carbopol Castor oil Cyclooxygenase 2 Inhibitors Cytotoxin Diagnosis Dietary Supplements Dinoprostone EDTA, Disodium Endopeptidases Enzyme-Linked Immunosorbent Assay Fetal Bovine Serum Glutamine Hydroxytoluene, Butylated Hypersensitivity Immunoglobulins Insecta Interferon Type II Lactate Dehydrogenase Lipopolysaccharides NFE2L2 protein, human NOS2A protein, human NS398 Ornithine Decarboxylase Penicillins Phosphoric Monoester Hydrolases Propylene Glycol PTGS2 protein, human resazurin Sodium Sodium Chloride sodium metabisulfite Sorbate, Potassium Streptomycin Superoxide Dismutase Tissues triethanolamine

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The API 20E is a standardized identification system for Enterobacteriaceae and other non-fastidious Gram-negative rods. It consists of 20 miniaturized biochemical tests, which allow the identification of the most frequently encountered members of the Enterobacteriaceae family as well as certain other Gram-negative bacteria.
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Lipofectamine 2000 is a cationic lipid-based transfection reagent designed for efficient and reliable delivery of nucleic acids, such as plasmid DNA and small interfering RNA (siRNA), into a wide range of eukaryotic cell types. It facilitates the formation of complexes between the nucleic acid and the lipid components, which can then be introduced into cells to enable gene expression or gene silencing studies.
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More about "Ornithine Decarboxylase"

Ornithine decarboxylase (ODC) is a critical enzyme involved in the synthesis of polyamines, which are essential for cell growth and proliferation.
This enzyme catalyzes the conversion of the amino acid ornithine into putrescine, the precursor for other important polyamines like spermidine and spermine.
ODC is closely linked to cellular processes like proliferation and differentiation, making it a key target for research in various fields.
Understanding the regulation and activity of this enzyme can provide valuable insights into a range of biological processes and disease states, including cancer, immune function, and neurological disorders.
ODC is often studied using techniques like API 20E, Lipofectamine 2000, and TRIzol reagent for cell culture and gene expression analysis. β-actin is commonly used as a reference gene, and instruments like the LightCycler 480 and RNeasy Mini Kit are employed for quantitative PCR and RNA extraction, respectively.
G418 solution and Tryptic soy broth may also be utilized in ODC-related experiments.
By exploring the role of ODC and its associated pathways, researchers can gain a deeper understanding of fundamental cellular mechanisms and develop potential therapeutic interventions for conditions where ODC dysregulation is implicated, such as in the MeSsage mMachine kit for in vitro transcription.