Total proteins were extracted from 100 mg of sample using extraction buffer (100 mM Tris-Cl pH8, 150 mM NaCl, 0.6% IGEPAL, 1 mM EDTA, 3 mM DTT with protease inhibitors, PMSF, leupeptin, aprotinin, pepstatin, antipain, chymostatin, Na2VO3, NaF, MG132, and MG115. Proteins were separated on a 10% polyacrylamide gel. Immunoblot analysis was carried out using mouse α-GFP (1:2000; Invitrogen) for TuMV GFP and rat α-HA (1:500) antibody for pCas13a. The antigens were detected by chemiluminescence using an ECL-detecting reagent (Thermo Scientific).
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Pepstatin
Pepstatin
Pepstatin is a potent, competitive inhibitor of aspartic proteases, such as pepsin, renin, and cathepsin D.
It has been widely used in biochemical and biomedical research to study the role of these enzymes in various physiological and pathological processes.
Pepstatin's ability to block aspartic protease activity has made it a valuable tool for investigating the involvement of these enzymes in diseases like hypertension, cancer, and Alzheimer's.
Researchers can leverage PubCompare.ai's AI-powered platform to effortlessly locate the best protocols from literature, pre-prints, and patents, and leverage AI-driven comparisons to identify the optimal products and procedures for their Pepstatin research, taking their studies to new heights.
It has been widely used in biochemical and biomedical research to study the role of these enzymes in various physiological and pathological processes.
Pepstatin's ability to block aspartic protease activity has made it a valuable tool for investigating the involvement of these enzymes in diseases like hypertension, cancer, and Alzheimer's.
Researchers can leverage PubCompare.ai's AI-powered platform to effortlessly locate the best protocols from literature, pre-prints, and patents, and leverage AI-driven comparisons to identify the optimal products and procedures for their Pepstatin research, taking their studies to new heights.
Most cited protocols related to «Pepstatin»
Antigens
Antipain
Aprotinin
Buffers
Chemiluminescence
chymostatin
Edetic Acid
Elafin
Immunoblotting
Immunoglobulins
leupeptin
MG 115
MG 132
Mice, House
pepstatin
polyacrylamide gels
Proteins
Sodium Chloride
Tromethamine
Forty-eight hours after Fugene-6 transfection, Cos1 cells in 100 mm2 plates were washed twice with PBS, scraped with 1.0 ml of Buffer A (20 mM Tris, pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1% Triton X-100) plus 50% glycerol and protease inhibitors (10 μg/mL each of leupeptin, aprotinin and pepstatin), sonicated, centrifuged at 13,000 × g for 4 min, supernatants collected and used immediately or stored at -20°C. Total luciferase activity in 1 μl of each crude extract was measured by adding it to 100 μl of assay buffer and substrate mixture (Renilla Luciferase Reagent Kit, Promega) in a 12 × 75 mm glass tube, vortexing and immediately measuring light-forming units with a luminometer (GeneProbe) for 10 sec. Lysate prepared from each 100 mm2 plate of transfected Cos1 cells typically provides enough extract for 60–200 assays. These crude Cos1 extracts containing these Ruc fusions were stable for at least a few weeks when stored in 50% glycerol at -20°C.
Immunoprecipitation assays were performed in 100 μl volumes containng 6 μl of a 30% suspension of protein A/G beads (in PBS), 1–10 μl sera (undiluted or diluted in Buffer A plus 100 μg/ml BSA), sufficient Cos1 cell extract to generate 1–5 million light units (usually 5 μl to 10 μl) and Buffer A and incubated at 4°C with tumbling for 5–120 minutes, washed 4–5 times with 1.2 ml of cold Buffer A and once with 1.0 ml of PBS. After the final wash, the beads, in a volume of about 10 μl, were added to the Ruc substrate and light units measured as described above. Since the capacity of these protein A/G is 24–32 mg/ml of packed beads, 2 μl of packed beads should be sufficient to immobilize most or all of the IgG in 1 μl of undiluted sera (assumed to be 10 mg/ml IgG). The amount of IgG in 2 μl of each sera that actually bound to protein A/G beads was estimated by measuring the amount of bead-bound sera released by a low pH glycine elution buffer and measured using the BCA Protein Assay kit (Pierce Biotechnology Inc.). The protein values varied from 2.0 μg to 7.3 μg/μl of patient sera (seeAdditional file 3 ).
Competition experiments were performed using MBP fusion proteins. Bacterial expression vectors were constructed by subcloning cDNA fragments into the pMAL-c2 vector (New England Biolabs). Recombinant MBP fusion proteins were produced in bacteria, purified by amylose-agarose affinity and eluted with maltose as described by the manufacturer and stored frozen or in 50% glycerol at -20°C. An MBP fusion containing the SPEC2 cDNA [35 (link)] was produced and used as a non-specific inhibitor. The integrity of the proteins was confirmed by SDS-PAGE electrophoresis and protein concentration determined. Diluted patient sera (10 μl used of sera diluted 1:10 in buffer A containing 100 μg/ml BSA) were used in the competition experiments described in Table2 , while only 5 μl of 1:10 diluted colon patient sera 34 was used in the experiments described in Figure 3 .
Immunoprecipitation assays were performed in 100 μl volumes containng 6 μl of a 30% suspension of protein A/G beads (in PBS), 1–10 μl sera (undiluted or diluted in Buffer A plus 100 μg/ml BSA), sufficient Cos1 cell extract to generate 1–5 million light units (usually 5 μl to 10 μl) and Buffer A and incubated at 4°C with tumbling for 5–120 minutes, washed 4–5 times with 1.2 ml of cold Buffer A and once with 1.0 ml of PBS. After the final wash, the beads, in a volume of about 10 μl, were added to the Ruc substrate and light units measured as described above. Since the capacity of these protein A/G is 24–32 mg/ml of packed beads, 2 μl of packed beads should be sufficient to immobilize most or all of the IgG in 1 μl of undiluted sera (assumed to be 10 mg/ml IgG). The amount of IgG in 2 μl of each sera that actually bound to protein A/G beads was estimated by measuring the amount of bead-bound sera released by a low pH glycine elution buffer and measured using the BCA Protein Assay kit (Pierce Biotechnology Inc.). The protein values varied from 2.0 μg to 7.3 μg/μl of patient sera (see
Competition experiments were performed using MBP fusion proteins. Bacterial expression vectors were constructed by subcloning cDNA fragments into the pMAL-c2 vector (New England Biolabs). Recombinant MBP fusion proteins were produced in bacteria, purified by amylose-agarose affinity and eluted with maltose as described by the manufacturer and stored frozen or in 50% glycerol at -20°C. An MBP fusion containing the SPEC2 cDNA [35 (link)] was produced and used as a non-specific inhibitor. The integrity of the proteins was confirmed by SDS-PAGE electrophoresis and protein concentration determined. Diluted patient sera (10 μl used of sera diluted 1:10 in buffer A containing 100 μg/ml BSA) were used in the competition experiments described in Table
Recombinant nanobodies were conjugated to epoxy-activated magnetic Dynabeads (Life Technologies), with minor modifications to published IgG coupling conditions57 (link). 10 μg recombinant protein was used per 1 mg of Dynabeads, with conjugations carried out in 0.1 M sodium phosphate, pH 8.0 and 1 M ammonium sulfate, with an 18–20 hour incubation at 30°C. Affinity isolations of yeast Nup84-GFP were carried out as previously described, using binding buffer consisting of 20 mM HEPES, pH 7.4, 500 mM NaCl, 2 mM MgCl2, 0.1% CHAPS, 0.1 M PMSF, and 3 μg/ml pepstatin A57 (link). For each experiment, 50 μl of bead slurry was used with 0.5 g of yeast cells. Similar conditions were used for HTB2-mCherry isolations (from yeast with HTB2 genomically tagged at the C-terminus with mCherry58 (link)), except lysate was sonicated 4 times for 10 s before centrifugation, and the binding buffer consisted of 20 mM HEPES, pH 8.0, 300 mM NaCl, 110 mM KOAc, 0.1% Tween-20, 0.1% Triton X-100, 0.1 M PMSF, and 3 μg/ml pepstatin A. Isolations of RBM7-GFP from HeLa cells were performed as previously described4 (link). 10 μl of bead slurry was used with 100 mg of cells, using a binding buffer of 20 mM HEPES, pH 7.4, 300 mM NaCl, 0.5% Triton X-100, with cOmplete Protease Inhibitor, EDTA-free (Roche).
To determine affinity isolation yields, samples of resuspended lysate were taken before and after Dynabead binding. These were run on a 4–12% Novex Bis-Tris gel in MES running buffer (Life Technologies), and probed by Western blotting using mouse anti-GFP antibody (Roche, cat. no. 11 814 460 001) diluted 1:1,000 in TBST/2% dry milk and an anti-mouse, HRP-conjugated secondary (GE Healthcare, cat. no. NA931V) diluted 1:3,000 in TBST/2% dry milk. Signals were quantified using ImageJ software.
To determine affinity isolation yields, samples of resuspended lysate were taken before and after Dynabead binding. These were run on a 4–12% Novex Bis-Tris gel in MES running buffer (Life Technologies), and probed by Western blotting using mouse anti-GFP antibody (Roche, cat. no. 11 814 460 001) diluted 1:1,000 in TBST/2% dry milk and an anti-mouse, HRP-conjugated secondary (GE Healthcare, cat. no. NA931V) diluted 1:3,000 in TBST/2% dry milk. Signals were quantified using ImageJ software.
The Rac activity assay is based on the Rap1 activity assay described by Franke et al. (1997) (link). We used a glutathione-S-transferase (GST)–PAK-CD (PAK-CRIB domain) fusion protein, containing the Rac- and Cdc42-binding region from human PAK1B (GenBank/EMBL/DDBJ accession number AF071884 ). A fragment encoding amino acids 56–272 of PAK1B was generated by standard PCR using the oligos AGCTGGATCCATTTTACCTGGAGAT and AGCTGAATTCATTTCTGGCTGTTGGATGTC, and then digested with BamHI/EcoRI and inserted between the BamH1 and EcoRI sites of pGEX2TK (Pharmacia Biotech , Piscataway, NJ) to yield GST–PAK-CD.
Escherichia coli BL21 cells transformed with the GST–PAK-CD construct were grown at 37°C to an absorbance of 0.3. Expression of recombinant protein was induced by addition of 0.1 mM isopropylthiogalactoside for 2 h. Cells were harvested, resuspended in lysis buffer (50 mM Tris-HCl, pH 8, 2 mM MgCl2, 0.2 mM Na2S2O, 10% glycerol, 20% sucrose, 2 mM dithiothreitol, 1 μg/ml leupeptin, 1 μg/ml pepstatin, and 1 μg/ml aprotinin), and then sonicated. Cell lysates were centrifuged at 4°C for 20 min at 45,000 g and the supernatant was incubated with glutathione-coupled Sepharose 4B beads (Pharmacia Biotech ) for 30 min at 4°C. Protein bound to the beads was washed three times in lysis buffer and the amount of bound fusion protein was estimated using Coomassie-stained SDS gels.
Escherichia coli BL21 cells transformed with the GST–PAK-CD construct were grown at 37°C to an absorbance of 0.3. Expression of recombinant protein was induced by addition of 0.1 mM isopropylthiogalactoside for 2 h. Cells were harvested, resuspended in lysis buffer (50 mM Tris-HCl, pH 8, 2 mM MgCl2, 0.2 mM Na2S2O, 10% glycerol, 20% sucrose, 2 mM dithiothreitol, 1 μg/ml leupeptin, 1 μg/ml pepstatin, and 1 μg/ml aprotinin), and then sonicated. Cell lysates were centrifuged at 4°C for 20 min at 45,000 g and the supernatant was incubated with glutathione-coupled Sepharose 4B beads (
2',5'-oligoadenylate
Amino Acids
Aprotinin
Biological Assay
Buffers
CDC42 protein, human
Cells
Cribs
Deoxyribonuclease EcoRI
Dithiothreitol
Escherichia coli
Gels
Glutathione
Glutathione S-Transferase
Glycerin
Homo sapiens
leupeptin
Magnesium Chloride
pepstatin
Proteins
Recombinant Proteins
Sepharose 4B
Sucrose
Tromethamine
Most recents protocols related to «Pepstatin»
BODIPY–pepstatin A (Thermo Scientific, P12271) is a probe used to detect active cathepsin D distribution and trafficking in lysosomes in vitro [14 (link)]. On DIV 11, co-cultured cortical neurons and astrocytes transduced with the mScarlet-LC3 viral vector were loaded with BODIPY–pepstatin A (1 μM) for 1 h in both soma and axonal compartments of the microfluidic chamber prior to real-time imaging. Afterwards, the medium at both sides was replaced to remove the fluorescent probe. In order to distinguish individual axons and vesicle fusion rather than spatial overlap, 3-min videos were acquired on the axon side before and at different time points after axotomy. For colocalization analysis between active cathepsin D, as indicated by BODIPY-pepstatin A with the EGFP fluorophore and mScarlet-LC3, the overlapped vesicles labeled with yellow signals were counted manually in individual axons and separately divided by the number of active cathepsin D and LC3 vesicles at each time point.
Aspartic proteases were purified as described previously by Balczun et al. (28 (link)) using immobilized pepstatin A with some modifications. 2 ml pepstatin A resin (G-Biosciences) were loaded onto empty gravity column (Bio-Rad) and subsequently equilibrated with 5 ml of binding buffer (0.1 M citrate, 0.5 M sodium chloride, pH 5). The resin was then incubated with 200 μg AM tissue extract (from unfed, 6 h, 1, 2, 7, and 14 days postfed insects) for 2 h on a rotary wheel at 300 rpm at 4 °C. The mixture was reloaded onto the column and allowed to flow through under gravity. The resin was washed four times with four resin bed volumes of binding buffer, followed by an additional four washes with four resin bed volumes of wash buffer (0.5 M sodium chloride). The bound proteins were eluted with six washes using four resin bed volumes of elution buffer (0.1 M sodium bicarbonate, 0.5 M sodium chloride, pH 8.7), and 4 ml size fractions were collected. The different recovered fractions were concentrated using 3 kDa MWCO columns (Merck) and analyzed by SDS-PAGE electrophoresis on 12% Tris-Tricine gel under reducing conditions. Gel was stained with silver staining kit (Serva).
The Protease Inhibitor Cocktail Set Ⅲ DMSO Solution (EDTA Free), 4-(2-Aminoethyl) benzenesulfonyl fluoride hydrochloride (AEBSF), aprotinin bovine lung, and leupeptin hemisulfate monohydrate were obtained from Wako. The stocks were dissolved in water. Bestatin and pepstatin A were also obtained from FUJIFILM Wako Pure Chemical Corporation, and the stocks were dissolved in DMSO. E-64 was obtained from Sigma-Aldrich, and the stock was dissolved in water. Each protease was used with the following final concentration : AEBSF 1 mmol / L, aprotinin bovine lung 0.8 µmol / L, E-64 15 µmol / L, leupeptin hemisulfate 20 µmol / L, Bestatin 50 µmol / L, pepstatin A 10 µmol / L.
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The lysosomal activities of cathepsin B and cathepsin D were determined using Magic Red Cathepsin B (#937, ImmunoChemistry Technologies) and BODIPY FL-Pepstatin A (P12271, Invitrogen), respectively. Fibroblasts were seeded in 96-well plates (black, clear bottom, PerkinElmer) at a density of 5000 cells/well and grown until the cells reached a confluence of 40%. Magic Red Cathepsin B and BODIPY FL-Pepstatin A stock solutions were prepared according to the manufacturer’s instructions. Cells were incubated with Magic Red Cathepsin B (1:25 dilution, 30 min) or BODIPY FL-Pepstatin A (1 µM, 1 h) in the dark at 37℃. Total lysosomal hydrolytic or degradation activity was determined with fluorescein isothiocyanate (FITC)-conjugated 40 K MW dextran (Xian Qiyue Biology, China). Cells were loaded with FITC-dextran (0.5 mg/mL) for 4 h at 37 °C. They were then washed with PBS and chased in fresh culture medium for 20 h to allow the dextran to be transported into the lysosomes or late endosomes. After washing twice with PBS, the cells were incubated for 10 min with Hoechst 33,342 (Immunochemistry Technologies) at a concentration of 1 µg/mL and then washed with PBS prior to imaging. Fibroblasts were imaged using the Opera Phenix High-Content Screening System (PerkinElmer) at 40×objective. Images were analyzed using ImageJ software. The 293T cells loaded with FITC-dextran can also be analyzed by CytoFLEX flow cytometry (Beckman Coulter, USA) without Hoechst 33,342 staining. Quantitative analysis of fluorescence intensities was calculated with FlowJo v10.8.1 software.
Top products related to «Pepstatin»
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Pepstatin A is a peptide inhibitor that specifically targets aspartic proteases. It is commonly used in biochemical research applications to inhibit the activity of proteases such as pepsin, renin, and cathepsin D.
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Leupeptin is a protease inhibitor that can be used in laboratory settings to inhibit the activity of certain proteases. It is a tripeptide compound that binds to and inhibits the catalytic sites of proteases.
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Aprotinin is a protease inhibitor derived from bovine lung tissue. It is used as a laboratory reagent to inhibit protease activity in various experimental procedures.
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Pepstatin is a protease inhibitor that can selectively inhibit aspartic proteases, such as pepsin, renin, and cathepsin D. It is a naturally occurring peptide compound isolated from various Actinomycetes bacterial strains. Pepstatin functions by binding to the active site of aspartic proteases, thereby preventing their enzymatic activity.
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PVDF membranes are a type of laboratory equipment used for a variety of applications. They are made from polyvinylidene fluoride (PVDF), a durable and chemically resistant material. PVDF membranes are known for their high mechanical strength, thermal stability, and resistance to a wide range of chemicals. They are commonly used in various filtration, separation, and analysis processes in scientific and research settings.
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PMSF is a protease inhibitor used in biochemical research and laboratory applications. It functions by irreversibly inhibiting serine proteases, which are a class of enzymes involved in various biological processes. PMSF is commonly utilized in protein extraction and purification protocols to prevent proteolytic degradation of target proteins.
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The Bradford assay is a colorimetric protein assay used to measure the concentration of protein in a solution. It is based on the color change of the Coomassie Brilliant Blue G-250 dye in response to various concentrations of protein.
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The Protease Inhibitor Cocktail is a laboratory product designed to inhibit the activity of proteases, which are enzymes that can degrade proteins. It is a combination of various chemical compounds that work to prevent the breakdown of proteins in biological samples, allowing for more accurate analysis and preservation of protein integrity.
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The Bio-Rad protein assay is a colorimetric detection and quantitation method for measuring the total protein content in a sample. It utilizes a dye-binding reagent that changes color when bound to proteins, allowing for the determination of protein concentration through spectrophotometric analysis.
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Polyvinylidene difluoride (PVDF) membranes are a type of lab equipment used for various applications. PVDF membranes are known for their chemical resistance, thermal stability, and mechanical strength. They are commonly used in filtration, separation, and transfer processes in laboratory settings.
More about "Pepstatin"
Pepstatin, a potent aspartic protease inhibitor, has been widely used in biochemical and biomedical research to study the role of enzymes like pepsin, renin, and cathepsin D in various physiological and pathological processes.
This versatile compound has proven invaluable for investigating the involvement of these proteases in conditions such as hypertension, cancer, and Alzheimer's disease.
Researchers can leverage PubCompare.ai's AI-powered platform to effortlessly locate the best protocols from literature, pre-prints, and patents, as well as leverage AI-driven comparisons to identify the optimal products and procedures for their Pepstatin-related studies.
This cutting-edge tool can help take their research to new heights.
Pepstatin A, a closely related analogue, shares similar inhibitory properties and is also widely used in biochemical applications.
Leupeptin and Aprotinin are additional protease inhibitors that are often utilized in conjunction with Pepstatin to create a comprehensive protease inhibitor cocktail.
When working with Pepstatin, researchers may also employ techniques like the Bradford assay or Bio-Rad protein assay to quantify protein concentrations.
Additionally, PVDF (polyvinylidene difluoride) membranes are commonly used in Western blotting experiments where Pepstatin may be utilized to prevent unwanted protease activity.
The versatility and potency of Pepstatin have made it an indispensable tool in the field of biochemistry and biomedical research.
By leveraging PubCompare.ai's innovative platform, scientists can streamline their Pepstatin-related experiments and unlock new insights into the complex world of protease biology and disease pathogenesis.
This versatile compound has proven invaluable for investigating the involvement of these proteases in conditions such as hypertension, cancer, and Alzheimer's disease.
Researchers can leverage PubCompare.ai's AI-powered platform to effortlessly locate the best protocols from literature, pre-prints, and patents, as well as leverage AI-driven comparisons to identify the optimal products and procedures for their Pepstatin-related studies.
This cutting-edge tool can help take their research to new heights.
Pepstatin A, a closely related analogue, shares similar inhibitory properties and is also widely used in biochemical applications.
Leupeptin and Aprotinin are additional protease inhibitors that are often utilized in conjunction with Pepstatin to create a comprehensive protease inhibitor cocktail.
When working with Pepstatin, researchers may also employ techniques like the Bradford assay or Bio-Rad protein assay to quantify protein concentrations.
Additionally, PVDF (polyvinylidene difluoride) membranes are commonly used in Western blotting experiments where Pepstatin may be utilized to prevent unwanted protease activity.
The versatility and potency of Pepstatin have made it an indispensable tool in the field of biochemistry and biomedical research.
By leveraging PubCompare.ai's innovative platform, scientists can streamline their Pepstatin-related experiments and unlock new insights into the complex world of protease biology and disease pathogenesis.