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PKA inhibitor

PKA inhibitors are small molecules that modulate the activity of protein kinase A (PKA), an enzyme involved in a variety of cellular processes.
These inhibitors can be used to study the role of PKA in physiological and pathological conditions, as well as to develop potential therapies for PKA-related diseases.
PubCompare.ai is an AI-driven platform that helps researchers optimize their PKA inhibitor research protocols by easily locating and comparing protocols from literature, preprints, and patents.
With advanced AI-driven comparisons, researchers can identify the best protocols and products to accelerate their PKA inhibitor research and unleash their full potential.

Most cited protocols related to «PKA inhibitor»

Continuous constant pH molecular dynamics (CpHMD) simulations 23 (link),24 (link) with a hybrid-solvent scheme and pH replica-exchange protocol 26 (link) were performed on BACE1 in complex with inhibitors 1 and 2 starting from the respective crystal structures (PDB ID 4FRS 7 (link) and 4YBI 8 (link)) using CHARMM (version C37b). 29 (link) The CHARMM22/CMAP all-atom force field 30 (link),31 (link) was used to represent BACE1, while the force field parameters for the inhibitors were obtained in house following the protocol of CHARMM General Force Field (CGenFF) 32 (link). Each system was simulated using 20 pH replicas in the pH range 1.3–8. Each BACE1 complex was simulated for 26 ns per replica under NPT conditions, resulting in a total simulation time of 520 ns. The last 18 ns per replica (360 ns in total) were used for analysis. Other simulation parameters and setting were identical to those in our previous work 5 (link). The titratable sites include all Asp, Glu and His residues on the protein and the amine group on the pyridine/pyrimidine ring of the inhibitor (see Table S1 for all calculated pKa’s). The model pKa’s for Asp, Glu and His are 4.0, 4.4, and 6.5, respectively, 26 (link) while those for inhibitor 1 and 2 are 2.9 and 3.7, respectively. The latter pKa’s were estimated using the program MoKa. 33 (link) The pKa measurements for the inhibitors were conducted using capillary electrophoresis experiment following the protocol from ref. 34 (link)
Publication 2016
Amines BACE1 protein, human Electrophoresis, Capillary Hybrids inhibitors PKA inhibitor Proteins Pyridines Pyrimidines Solvents

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Publication 2015
1-Methyl-3-isobutylxanthine Adult Animals Animals, Laboratory Cells Cultured Cells Dietary Supplements Isoproterenol Kinetics Neurons Pacemaker, Artificial Cardiac Pharmaceutical Preparations Phosphodiesterase Inhibitors Phosphorylation Phosphotransferases PKA inhibitor Proteins Psychological Inhibition Rabbits Sinoatrial Node
We have used a mouse model of partial “warm” hepatic IRI (2 (link)). In brief, animals were anesthetized, injected with heparin (100U/kg i.p.), and the arterial/portal venous blood supply to the cephalad lobes was interrupted by an atraumatic clip for 90min. Sham-operated mice underwent the same procedure, but without vascular occlusion. In the treatment groups, animals were infused 1h prior to the onset of liver ischemia with a single dose of PACAP27 or PACAP38 neuropeptide (50nmol/mouse i.v., Phoenix Pharmaceuticals, Burlingame, CA) dissolved in PBS. Some recipients were given H-89 (cAMP-PKA inhibitor; 20nmol/mouse i.v., Sigma-Aldrich, St. Louis, MO) dissolved in dimethyl sulfoxide (DMSO). Mice were sacrificed at various time-points of reperfusion; liver and serum samples were collected for analysis.
Publication 2012
Animals Arteries Blood Vessel Clip Dental Occlusion Heparin Ischemia Liver Mice, House Neuropeptides Pharmaceutical Preparations Pituitary Adenylate Cyclase Activating Polypeptide 27 Pituitary Adenylate Cyclase Activating Polypeptide 38 PKA inhibitor Reperfusion Serum Sulfoxide, Dimethyl Veins, Portal
First, we activated the preparation at the slack SL (SL 1.90 μm) with a saturating Ca2+ concentration (pCa 4.5) to secure the ends of the preparation and to determine the quality of the contractile machinery. The values of maximal Ca2+-activated force (see below) were similar to those obtained in our previous studies conducted under the same experimental condition (Fukuda et al., 2003 (link), 2005 (link)). The preparation was stretched from the slack SL (i.e., 1.90 μm) to various SLs at a constant velocity of 0.1 muscle length/s and held for 30 min (15 min for gelsolin experiments; see Fig. 5), followed by a release to the slack SL (SL measured by later diffraction, Granzier and Irving, 1995 (link); Wu et al., 2000 (link); Fukuda et al., 2003 (link), 2005 (link)). After 1 h, the preparation was stretched again at the same velocity to determine the reproducibility of passive force. Only when the passive force development was reproducible (<3% reduction; used as a criterion), the preparation was incubated for 50 min at 22°C with purified PKA (catalytic subunit from bovine heart; Sigma-Aldrich) at a concentration of 1 U/μl, based on our previous study (Yamasaki et al., 2002 (link)). In some experiments, we used PKA-specific inhibitor (PKI; Sigma-Aldrich) at a concentration of 50 μM. Then, the same stretch-hold protocol was repeated and stress-relaxation data were obtained.
Finally, according to previous reports (Granzier and Irving, 1995 (link); Wu et al., 2000 (link); Fukuda et al., 2003 (link), 2005 (link)), the preparation was treated with KCl/KI, and titin-based passive force was obtained as total passive force minus collagen-based (KCl/KI insensitive) passive force. We found in collagen strips (prepared from rat ventricular trabeculae with KCl/KI treatment) that passive force is unaffected by PKA treatment (not depicted). Throughout the study, to minimize contraction-induced structural damage on the preparation and to ensure high reproducibility of passive force (Fukuda et al., 2003 (link), 2005 (link)), we measured passive and active forces at 12°C.
To extract thin filaments, some rat ventricular (RV) preparations were incubated overnight at ∼4°C in relaxing solution containing gelsolin fragment FX-45 (∼1 mg/ml) during continuous agitation. Maximal Ca2+-activated force was decreased to ∼5% of the control value with no significant difference in the value of steady-state passive force (see below). To ensure high reproducibility of passive force, we tested the effect of PKA on passive force (as described above), using a shorter (i.e., 15 min) hold period.
Publication 2005
ARID1A protein, human Bos taurus Cancellous Bone Catalytic Domain Collagen Cytoskeletal Filaments Gelsolin Heart Heart Ventricle Muscle Contraction Muscle Tissue PKA inhibitor Titin Kinase
We report on Janelia Research Campus GENIE Project (GP) lines GP8.x (where ‘x’ refers to the founder number) expressing jRGECO1a for neural activity imaging. Thy1-jRGECO1a-WPRE transgenic mice were generated using C57BL6/J mice [27 ]. The transgene includes the Thy1 promoter [21 (link)], a nuclear export signal (NES; from cAMP-dependent protein kinase inhibitor alpha subunit) fused upstream of jRGECO1a, a woodchuck hepatitis virus post-transcriptional regulatory element (WPRE) that has been shown to increase mRNA stability and protein expression [28 (link), 29 (link)], and a polyadenylation signal (pA) from the bovine growth hormone gene. Genotyping primers were 5’-ACAGAATCCAAGTCGGAACTC-3’ and 5’-CCTATAGCTCTGACTGCGTGAC-3’, which amplify a 296-bp fragment spanning part of the Thy1 promoter and NES-jRGECO1a. Mouse lines GP8.20, GP8.31, GP8.58, and GP8.62 were deposited at The Jackson Laboratory (stock no. 030525, 030526, 030527, 030528).
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Publication 2018
Genes, vif Genie Glycoprotein Hormones, alpha Subunit growth hormone, bovine Hepatitis B Virus, Woodchuck Mice, Laboratory Mice, Transgenic Nervousness Nuclear Export Signals Oligonucleotide Primers PKA inhibitor Polyadenylation Proteins Regulatory Elements, Transcriptional Transgenes

Most recents protocols related to «PKA inhibitor»

FRC cell lines were established from peripheral LNs by long-term culturing as described previously74 (link) with minor modifications. In brief, LNs from 8-week-old C57BL/6 N mice were dissected and disrupted using two 25 G needles before enzymatic digestion with DMEM medium containing 3.5 mg/ml Collagenase D and 40 μg/ml DNase I at 37 °C for 30 min with agitation75 . The mixture was then filtered through a 70 μm cell strainer and centrifuged at 300 g for 5 min at 4 °C. The cell pellet was resuspended and cultured in DMEM medium (supplemented with 10% FBS and 1% Penicillin/Streptomycin) (5% CO2, 37 °C). After 24 h, non-adherent cells were removed, and fresh medium was added to continue culturing until cells reached confluence. Adherent-stromal cells were then trypsinized, and triple-stained with antibodies to identify FRCs: Cd45 Pacific blue (1:100), Cd31 PE (1:100) and gp38 APC (1:100). FRCs were sort-purified using a MoFlo Optical Bench Sorter (Beckman Coulter) to achieve a purity of ≥95%. The sorted cells were immediately cultured in DMEM medium for expansion, and then seeded into 60 mm dishes in a density of 3 × 105 per well to grow until confluence, followed by starvation for overnight and treatment with 10 μM isoproterenol (Sigma-Aldrich), 5 μM forskolin (Sigma-Aldrich), and 5 μM PKA inhibitor H89 dihydrochloride hydrate (Sigma-Aldrich) for 8 h. Culture media were collected to determine the concentration of IL-33 using a mouse IL-33 immunoassay kit (Immunodiagnostics Limited) or LDH using a CyQUANT LDH Cytotoxicity fluorescent assay kit (Thermo Fisher Scientific).
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Publication 2023
Antibodies Biological Assay Cell Lines Cells Colforsin Collagenase Culture Media Cytotoxin Deoxyribonuclease I Digestion Enzymes Hyperostosis, Diffuse Idiopathic Skeletal IL33 protein, human Immunoassay Immunodiagnosis Isoproterenol Mice, Inbred C57BL Mus Needles Penicillins PKA inhibitor Streptomycin Stromal Cells Vision
MCs were isolated from human foreskin tissue as previously described [51 (link)]. Each mast cell preparation/culture originated from several (2–10) donors to achieve sufficient cell numbers, as routinely performed in our lab [52 (link),53 (link),57 (link),88 (link),89 (link)]. The skin was obtained from circumcisions, with written, informed consent of the patients or legal guardians and approval by the university ethics committee (protocol code EA1/204/10, 9 March 2018). The experiments were conducted according to the Declaration of Helsinki Principles. Briefly, the skin was cut into strips and treated with dispase (26.5 mL per preparation, activity: 3.8 U/mL; Boehringer-Mannheim, Mannheim, Germany) at 4 °C overnight, the epidermis was removed, the dermis was finely chopped and then digested with 2.29 mg/mL collagenase (activity: 255 U/mg; Worthington, Lakewood, NJ, USA), 0.75 mg/mL hyaluronidase (activity: 1000 U/mg; Sigma, Deisenhofen, Germany) and DNase I at 10 µg/mL (Roche, Basel, Switzerland). Cells were filtered stepwise from the resulting suspension (100 and 40 µm strainers, Fisher Scientific, Berlin, Germany). MC purification was achieved by anti-human c-Kit microbeads (#130-091-332) and an Auto-MACS separation device (both from Miltenyi-Biotec, Bergisch Gladbach, Germany), giving rise to 98–100% pure preparations (FACS double staining of KIT/FcεRI (anti-FcεRI eBiosciene #11-5899-42), Fisher Scientific; anti-CD117 Miltenyi-Biotec # 130-111-593) and acidic toluidine blue (Sigma) staining, 0.1% in 0.5 N HCl (Fisher Scientific), as described previously [90 (link),91 (link)].
MCs were cultured in the presence of SCF, and IL-4 was freshly provided twice weekly when cultures were re-adjusted to 5 × 105/mL. MCs were automatically counted by CASY-TTC (Innovatis/Casy Technology, Reutlingen, Germany) [88 (link),92 (link)].
Experiments were performed 3–4 d after the last addition of growth factors. For inhibition studies, cells were pre-incubated with 666-15 (CREB inhibitor; 5 µM unless otherwise stated; from Merck Chemicals, Darmstadt, Germany) or SCH772984 (ERK1/2 inhibitor; 10 µM), Pictilisib (PI3K inhibitor; 10 µM), Trametinib (MEK1/2 inhibitor; 10 µM), SB203580 (p38 inhibitor; 10 µM), SP600125 (JNK inhibitor; 10 µM), Pimozide (STAT5 inhibitor; 10 µM) and STAT3-IN (STAT3 inhibitor; 10 µM), all from Enzo Life Sciences, Germany, or imatinib-mesylate (Gleevec, KIT inhibitor; 10 µM, from Biozol Diagnostica, Eching, Germany) or KT 5720 (PKA inhibitor; 2 µM, from Bio-Techne, Wiesbaden, Germany) for 15 min, then stimulated (or not) by SCF (100 ng/mL). IL-33 was purchased from PeproTech (Hamburg, Germany) and applied in a concentration of 20 ng/mL, as described previously [52 (link)].
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Publication 2023
Acids Cell Culture Techniques Cells Deoxyribonuclease I Dermis dispase Donors Epidermis Ethics Committees Factor D, Complement Fc epsilon RI Foreskin Gleevec Homo sapiens Hyaluronidase IL33 protein, human Imatinib Mesylate KT 5720 Legal Guardians Male Circumcision MAP2K1 protein, human Medical Devices Microspheres Mitogen-Activated Protein Kinase 3 Neutrophil Collagenase Patients Phosphatidylinositol 3-Kinases pictilisib Pimozide PKA inhibitor Psychological Inhibition SB 203580 SCH772984 Skin SP600125 STAT3 Protein STAT5A protein, human Tissues Tolonium Chloride trametinib
T0901317, 9-cis-retinoic acid, phorbol 12-myristate 13-acetate (PMA), GLP-1 (7–37), and exendin-(9–39) were purchased from Sigma (St Louis, MO, USA). Endotoxin, fatty-acid-free bovine serum albumin (BSA), and the PKA inhibitor 14–22 amide were purchased from Calbiochem (Merck KGaA, Darmstadt, Germany). Sitagliptin phosphate and vildagliptin were purchased from Toronto Research Chemicals Inc. (Toronto, ON, Canada).
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Publication 2023
Alitretinoin Amides Endotoxins Fatty Acids Glucagon-Like Peptide 1 PKA inhibitor Serum Albumin, Bovine Sitagliptin Phosphate T0901317 Tetradecanoylphorbol Acetate Vildagliptin
THP-1 human monocytes (RIKEN, Tsukuba, Japan) were cultured in an RPMI-1640 medium containing 10% fetal bovine serum (Life Technologies Co, Carlsbad, CA, USA), 100 units/mL of penicillin G, and 100 μg/mL of streptomycin. THP-1 cells were treated with 10 μg/mL of PMA and 3.4% β-mercaptoethanol for 72 h prior to differentiation to macrophages [31 (link)]. After differentiation, the RPMI-1640 was used with with 4.5 g/L of high glucose for cholesterol efflux. For all experiments, cells were maintained in a serum-free medium containing 0.2% BSA supplemented with or without additives (5 μmol/L of T0901317 and 9-cis-retinoic acid or GLP-1). Sitagliptin phosphate, exendin-(9–39), and a PKA inhibitor were added 30 min prior to incubation with GLP-1. The concentrations of the DPP-4 inhibitor and GLP-1 in this study were selected in accordance with previous reports [24 (link),30 (link),32 (link),33 (link)].
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Publication 2023
2-Mercaptoethanol Alitretinoin Cells Cholesterol Dipeptidyl-Peptidase IV Inhibitors Fetal Bovine Serum Glucagon-Like Peptide 1 Glucose Homo sapiens Macrophage Monocytes Penicillin G PKA inhibitor Serum Sitagliptin Phosphate Streptomycin T0901317 THP-1 Cells
The cAMP assay was performed in 5-HTR1E expressing HEK293 cells. 10,000 cells/well were seeded in a lysine coated 96 well plate in 10% FBS DMEM media. On the next day, cells were incubated with 200 ng PTX (Gi inhibitor) in serum free media for 24 h. or 10 μM H-89 (PKA inhibitor) for 30 min. Before treatment with 1μM 5-HT or BRL54443, these cells were induced with 10 μM forskolin (cAMP activator) in the presence of phosphodiesterase inhibitor (Cat. no. 524718, set I-Calbiochem, Sigma Aldrich, USA) for 15 min. The cAMP assay was performed using cAMP-Glo Assay kit (cat. no. V1501, Promega, USA) according to the manufacturer’s protocol and luminescence was recorded on plate reader. All experiments were performed in triplicate and repeated at least three times.
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Publication Preprint 2023
Biological Assay Cells Colforsin Culture Media, Serum-Free HEK293 Cells Luminescence Lysine Phosphodiesterase Inhibitors PKA inhibitor Promega

Top products related to «PKA inhibitor»

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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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Forskolin is a lab equipment product manufactured by Merck Group. It is a compound derived from the roots of the Coleus forskohlii plant. Forskolin is used as a tool for research purposes in the laboratory setting.
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PD98059 is a chemical compound used as a laboratory reagent. It functions as a specific and potent inhibitor of the mitogen-activated protein kinase (MAPK) pathway.
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KT5720 is a protein kinase inhibitor manufactured by Bio-Techne. It inhibits the activity of cAMP-dependent protein kinase (PKA). The product is intended for research use only and not for use in diagnostic procedures.
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KT5720 is a laboratory product manufactured by the Merck Group. It is a compound used in scientific research and experimentation. The core function of KT5720 is to serve as a tool for researchers and scientists in their investigations and experiments.
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LY294002 is a chemical compound that functions as a specific inhibitor of phosphoinositide 3-kinase (PI3K). It is commonly used in laboratory research settings to investigate the role of PI3K signaling pathways.
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DMSO is a versatile organic solvent commonly used in laboratory settings. It has a high boiling point, low viscosity, and the ability to dissolve a wide range of polar and non-polar compounds. DMSO's core function is as a solvent, allowing for the effective dissolution and handling of various chemical substances during research and experimentation.
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PKA inhibitor H89 is a laboratory reagent used for research purposes. It acts as a potent and selective inhibitor of protein kinase A (PKA). PKA is a serine/threonine protein kinase that plays a crucial role in various cellular signaling pathways. H89 can be utilized in experimental settings to study the effects of PKA inhibition on cellular processes.
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DMEM (Dulbecco's Modified Eagle's Medium) is a cell culture medium formulated to support the growth and maintenance of a variety of cell types, including mammalian cells. It provides essential nutrients, amino acids, vitamins, and other components necessary for cell proliferation and survival in an in vitro environment.
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Isoproterenol is a synthetic catecholamine used as a laboratory reagent. It acts as a non-selective beta-adrenergic agonist, stimulating both beta-1 and beta-2 adrenergic receptors. Isoproterenol is commonly used in research applications to study cardiovascular and respiratory function.

More about "PKA inhibitor"

Protein kinase A (PKA) is a critically important enzyme involved in a wide range of cellular processes.
PKA inhibitors are small molecules that modulate PKA activity, offering valuable tools for researchers to study the role of PKA in physiological and pathological conditions.
These inhibitors can also be leveraged in the development of potential therapies for PKA-related diseases.
PubCompare.ai is an AI-powered platform that empowers researchers to optimize their PKA inhibitor research protocols.
By easily locating and comparing protocols from literature, preprints, and patents, researchers can identify the best protocols and products to accelerate their PKA inhibitor research.
The advanced AI-driven comparisons provided by PubCompare.ai help researchers unlock their full research potential.
PKA inhibitors can be used in conjunction with other compounds like FBS (Fetal Bovine Serum), Forskolin, PD98059, KT5720, LY294002, and DMSO (Dimethyl Sulfoxide) to study the complex interplay between PKA and related signaling pathways.
The PKA inhibitor H89, for example, is a widely used tool for investigating the role of PKA in various cellular processes.
Additionally, DMEM (Dulbecco's Modified Eagle Medium) and Isoproterenol are often utilized in PKA-related research.
By leveraging the power of PubCompare.ai and exploring the diverse range of PKA inhibitors and related compounds, researchers can unlock new insights, optimize their experimental protocols, and drive breakthroughs in understanding the fundamental mechanisms underlying PKA's functions.
This comprehensive approach empowers researchers to unleash their full potential in PKA inhibitor research.