We assessed pesticide residues in fruits and vegetables using data from US Department of Agriculture’s Pesticide Data Program, a national program started in 1991 that annually tests agricultural commodities in the USA for the presence of ~ 450 different pesticide residues.22 To best represent the pesticide residues in the food supply, the Pesticide Data Program collects samples from 10 or more participating States comprising 50% of the nation’s population. Before testing, the produce is either washed or peeled to mimic consumer practices, allowing for realistic estimates of exposure. To determine the average pesticide residue status of fruits and vegetables, we developed the PRBS using the Pesticide Data Program annual reports corresponding to the periods in which the diet history of the participants was captured by the FFQ.22 Briefly, we defined PRBS13 (link) according to three contamination measures from the Pesticide Data Program: (1) the percentage of samples tested with any detectable pesticides; (2) the percentage of samples tested with pesticides exceeding tolerance levels; and (3) the percentage of samples with three or more individual detectable pesticides. We ranked the 36 FVs included in the FFQ according to each of the three contamination measures, divided them into tertiles for each of these three measures, and assigned each food a score of 0, 1, and 2 corresponding to the bottom, middle, and top tertile, respectively. The final PRBS for each food was the sum of tertile scores across the three PDP contamination measures (Supplementary Table 1 ). We classified foods with a PRBS ≥ 4 as high pesticide residue foods and those with a PRBS < 4 as low pesticide residue foods.13 (link) To derive a PRBS specific to a class of pesticides, we used a similar algorithm (i.e., three contamination measures) but restricted Pesticide Data Program data to organophosphates and pyrethroids only for calculating organophosphate-PRBS and pyrethroid-PRBS, respectively. In sensitivity analyses, we also considered an alternate measure, PRBS-weighted fruit and vegetable intake, calculated as the product of each food’s PRBS score (on a scale of 0 to 6) and its intake frequency.
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Chemicals & Drugs
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Amino Acid
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Retinoblastoma Protein
Retinoblastoma Protein
Retinoblastoma Protein: A critical cell cycle regulator that plays a key role in suppressing tumor development.
This phosphoprotein binds to and inhibits the activity of E2F transcription factors, thereby controlling the expression of genes essential for cell cycle progression.
Alterations or inactivation of the retinoblastoma protein are frequently observed in a variety of human cancers, making it an important target for cancer research and therapy.
Understand the latest insights on this crucial protein with PubCompare.ai's cutting-edge AI platform, which can help you effortlessly locate relevant protocols and leverage AI-powered comparisons to identify the best approaches for your Retinoblastoma Protein research.
This phosphoprotein binds to and inhibits the activity of E2F transcription factors, thereby controlling the expression of genes essential for cell cycle progression.
Alterations or inactivation of the retinoblastoma protein are frequently observed in a variety of human cancers, making it an important target for cancer research and therapy.
Understand the latest insights on this crucial protein with PubCompare.ai's cutting-edge AI platform, which can help you effortlessly locate relevant protocols and leverage AI-powered comparisons to identify the best approaches for your Retinoblastoma Protein research.
Most cited protocols related to «Retinoblastoma Protein»
Diet
Food
Fruit
Hypersensitivity
Immune Tolerance
Organophosphates
Pesticide Residues
Pesticides
Pyrethroids
Retinoblastoma Protein
Vegetables
Beverages
Diagnosis
Diet
Females
Folate
Food
Hypersensitivity
Immune Tolerance
Males
Ovum Implantation
Pesticide Residues
Pesticides
Pregnancy
Retinoblastoma Protein
Spontaneous Abortion
Sterility, Reproductive
Woman
Youth
Corns
Freezing
Fruit
Immune Tolerance
Onions
Pesticide Residues
Pesticides
Retinoblastoma Protein
Strawberries
Vegetables
As noted above, each participant completed two identification tests, thus generating individual data sets (I and II) for model parameter estimation and validation. To prevent over-fitting and to eliminate potential order-of-presentation effects, a counterbalanced cross-validation approach was implemented: for each participant, data set I was used to estimate model parameters and data set II was used as validation data for the estimated models; then, for the same participant, data set II was used for model estimation and data set I for validation. Thus, for the 11 participants, a total of 22 estimation data sets and 22 validation data sets were obtained.
According to the test protocol (Sect.5.2 , Fig. 4 a), an evaluation interval from 290 s to 2085 s was used to estimate and validate model parameters. This interval, within one single PRBS period, was selected, such that the number of samples where the input was high ( m/s) equalled the number of samples where the input was low ( m/s). Here, on the evaluation period from 290 s to 2085 s and with a sample period of 5 s, the total number of samples was N = 360, thus giving 180 low samples and 180 high samples.
To remove any potential drifting Phase III dynamic of the HR response, the mean value and any trend were removed (Matlab “detrend” function) prior to estimation and validation; the mean value of the input signal was also removed. An exemplary data set following this preprocessing procedure is provided (Fig.1 ), with raw data are shown above (Fig. 4 b).
For each estimation data set, two linear time-invariant transfer functions were employed to model the dynamic response from treadmill speed to HR: a first-order transfer function (Eq.3 ) which combined Phases I and II into a single time constant, and a second-order transfer function (Eq. 4 ) with separate time constants for Phases I and II. Hence, for the 11 participants, a total of 22 first-order models and 22 second-order models were estimated: Here, and are steady-state gains, and , , and are time constants. Model parameters were calculated from the estimation data sets using a least-squares optimisation procedure (“procest” function from the Matlab System Identification Toolbox; The Mathworks, Inc., USA).
After model estimation, the corresponding validation data sets were used to compute goodness-of-fit measures for the resulting first- and second-order models. Two outcome measures were used: the normalised root-mean-square error [denoted fit, Eq. (5 )], and the root-mean-square error [denoted RMSE, Eq. (6 )], as follows: Here, is the simulated HR response obtained using the estimated models and the input signal, and HR is the measured HR from the validation data. is the mean value of . i is the discrete time index and N is the number of discrete samples considered (as described above, ). Both of the above outcomes were calculated using the “compare” function from the Matlab System Identification Toolbox.
According to the test protocol (Sect.
To remove any potential drifting Phase III dynamic of the HR response, the mean value and any trend were removed (Matlab “detrend” function) prior to estimation and validation; the mean value of the input signal was also removed. An exemplary data set following this preprocessing procedure is provided (Fig.
For each estimation data set, two linear time-invariant transfer functions were employed to model the dynamic response from treadmill speed to HR: a first-order transfer function (Eq.
After model estimation, the corresponding validation data sets were used to compute goodness-of-fit measures for the resulting first- and second-order models. Two outcome measures were used: the normalised root-mean-square error [denoted fit, Eq. (
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GZMB protein, human
Plant Roots
Retinoblastoma Protein
Adenoviruses
Adenovirus Vaccine
Adult
Animals, Laboratory
AT-1012
BRCA1 protein, human
Cloning Vectors
Cytokeratin 18
Dental Caries
Diet
Diet, High-Fat
Epithelium
Fat-Restricted Diet
Freezing
Infection
Institutional Animal Care and Use Committees
Large T-Antigen
Mice, Laboratory
Mice, Obese
Microarray Analysis
Needles
Neoplasms
Nitrogen
Obesity
Ovarian Neoplasm
Ovary
Oviducts
Pituitary Stalk
Retinoblastoma Protein
RNA, Messenger
Serum
Simian virus 40
Synovial Bursa
Tissues
Transgenes
Tumor Suppressor Genes
Woman
Most recents protocols related to «Retinoblastoma Protein»
Comparisons of demographic (age, gender, and education) and behavioral variables (PRBS scores, CFQ scores, error rate, error in Go and error in No-Go trials in Go-No/Go task) between the groups (i.e., paranormal believers and skeptics) were conducted using the independent two-sample t-test and chi-square tests. EEG absolute power data were analyzed separately for all the bands, the areas, the hemispheres, and the hemispheres/regions using an independent two-sample t-test between two groups (paranormal believers vs. skeptics) with adjusted p-values using the false discovery rate (FDR) method to limit type I error98 . FDR correction was not performed in correlation results due to the exploratory nature of this stage. The effect size for the t-test was calculated using Cohen's d. In addition, we used Pearson’s correlations to explore the relationships between resting-state EEG activities and demographic/behavioral variables in paranormal believers and skeptics. A multiple regression analysis was performed to show the effect of frequency bands (delta, theta, alpha1, alpha2, beta1, beta2, and gamma) as predictors on the measure of the paranormal belief as the criterion. In addition, we used model 4 of the PROCESS macro in SPSS99 to examine whether the effect of paranormal beliefs on inhibitory control (error in No-Go trials in Go/No-Go task) was mediated by frequency bands (delta, theta, alpha, alpha1, alpha2, beta, beta1, beta2, and gamma) in the whole brain (the first mediation model) and frontal lobe (the second mediation model) separately. The statistical significance of the indirect mediation effect on inhibitory control was assessed by bootstrapping (5000 samples) with a 95% confidence interval99 . Statistical analyses were performed using IBM SPSS Statistics version 24 (IBM Inc., New York, USA), and MATLAB 2021a (MathWorks, Natick, Massachusetts), and p-values less than 0.05 were considered statistically significant.
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Brain
Gamma Rays
Gender
Lobe, Frontal
Psychological Inhibition
Retinoblastoma Protein
To investigate the potential interaction of the screened compounds with HRAS, KRAS, and RB1 proteins, molecular docking was carried out. The structure of proteins was retrieved from PDB (HRAS: 2CE2, KRAS: 6TAN, RB1: 2R7G). Then, the structures were cleaned and energy minimized using Chimera. Finally, the binding affinities were measured using PyRx and the interactions were analyzed using Pymol [47 ].
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Chimera
HRAS protein, human
K-ras Genes
Proteins
Retinoblastoma Protein
Protocol full text hidden due to copyright restrictions
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CASP8 protein, human
Continuous Wave Lasers
Pulse Rate
Retinoblastoma Protein
Vision
Protocol full text hidden due to copyright restrictions
Open the protocol to access the free full text link
CASP8 protein, human
Electricity
PIAS1 protein, human
Pulse Rate
Pulses
Retinoblastoma Protein
Transmission, Communicable Disease
Vision
Statistical analysis was performed using GraphPad Prism 5 (GraphPad Software, Inc., San Diego, California, US, https://www.graphpad.com/ ) and SPSS 16.0 (SPSS Inc., IL, USA, https://www.ibm.com/cn-zh/spss ), and a t test was used to determine the significance fo differences between two independent samples. One-way ANOVA was used to analyse the significance of differences between three or more independent samples. Analysis of the relationship between CENPF expression and neoadjuvant chemotherapy grade and clinicopathological parameters was performed using the chi-square test and Fisher's exact test. We used the Kaplan‒Meier method and log-rank t test to determine the significance of differences in survival curves. Correlation analysis between coexpressed genes in the TCGA dataset in breast cancer was performed using Pearson's correlation coefficient; immunofluorescence colocalization of CENPF and Rb proteins analysed using Pearson's correlation coefficient, R values > 0.3 or < -0.3 were considered to indicate statistical significance. Each experiment was repeated at least 3 times, and P < 0.05 was considered to indicate statistical significance.
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CENPF protein, human
Genes
Immunofluorescence
Malignant Neoplasm of Breast
Neoadjuvant Chemotherapy
neuro-oncological ventral antigen 2, human
prisma
Retinoblastoma Protein
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Propidium iodide is a fluorescent dye commonly used in molecular biology and flow cytometry applications. It binds to DNA and is used to stain cell nuclei, allowing for the identification and quantification of cells in various stages of the cell cycle.
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The BenchMark XT is a fully automated, open-architecture immunohistochemistry (IHC) and in situ hybridization (ISH) system designed for routine and advanced research applications. The system provides consistent, reliable, and high-quality results by automating the entire staining process, from slide preparation to staining, washing, and detection.
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[γ-32P]ATP is a radiolabeled compound containing the radioactive isotope phosphorus-32 (32P) attached to the gamma phosphate group of adenosine triphosphate (ATP). This product is commonly used as a tracer in various biochemical and molecular biology applications, such as nucleic acid labeling and analysis.
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Penicillin is a type of antibacterial drug that is widely used in medical and laboratory settings. It is a naturally occurring substance produced by certain fungi, and it is effective against a variety of bacterial infections. Penicillin works by inhibiting the growth and reproduction of bacteria, making it a valuable tool for researchers and medical professionals.
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Streptomycin is a laboratory product manufactured by Merck Group. It is an antibiotic used in research applications.
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β-actin is a protein that is found in all eukaryotic cells and is involved in the structure and function of the cytoskeleton. It is a key component of the actin filaments that make up the cytoskeleton and plays a critical role in cell motility, cell division, and other cellular processes.
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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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GraphPad Prism 5 is a data analysis and graphing software. It provides tools for data organization, statistical analysis, and visual representation of results.
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M199 medium is a cell culture medium developed for the maintenance and growth of a variety of cell types. It provides a balanced formulation of essential nutrients, vitamins, and other components required for cell proliferation and survival in vitro.
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DMSO is a versatile organic solvent commonly used in laboratory settings. It has a high boiling point, low viscosity, and the ability to dissolve a wide range of polar and non-polar compounds. DMSO's core function is as a solvent, allowing for the effective dissolution and handling of various chemical substances during research and experimentation.
More about "Retinoblastoma Protein"
Retinoblastoma Protein (RB), a crucial cell cycle regulator, plays a pivotal role in suppressing tumor development.
This phosphoprotein binds to and inhibits the activity of E2F transcription factors, thereby controlling the expression of genes essential for cell cycle progression.
Alterations or inactivation of the retinoblastoma protein are frequently observed in a variety of human cancers, making it an important target for cancer research and therapy.
To optimize your Retinoblastoma Protein (RB) research, PubCompare.ai's cutting-edge AI platform can help you effortlessly locate relevant protocols from the literature, preprints, and patents.
Leverage AI-powered comparisons to identify the best approaches, streamlining your research process and uncovering valuable insights.
Explore related terms and techniques, such as Propidium iodide (PI), a fluorescent dye used to stain DNA and assess cell cycle progression, and BenchMark XT, an automated immunohistochemistry (IHC) system.
Incorporate radioactive [γ-32P]ATP to study protein phosphorylation, and utilize antibiotics like Penicillin and Streptomycin to maintain cell culture conditions.
Measure expression levels with β-actin as a loading control, and supplement your cell culture media with Fetal Bovine Serum (FBS) to support cell growth.
Analyze your data using GraphPad Prism 5, a powerful statistical software, and maintain your cell lines in M199 medium supplemented with DMSO as a solvent.
Stay ahead of the curve in Retinoblastoma Protein (RB) research with PubCompare.ai's AI-driven platform, where you can effortlessly access the latest protocols, compare methodologies, and uncover groundbreaking insights to accelerate your discoveries.
This phosphoprotein binds to and inhibits the activity of E2F transcription factors, thereby controlling the expression of genes essential for cell cycle progression.
Alterations or inactivation of the retinoblastoma protein are frequently observed in a variety of human cancers, making it an important target for cancer research and therapy.
To optimize your Retinoblastoma Protein (RB) research, PubCompare.ai's cutting-edge AI platform can help you effortlessly locate relevant protocols from the literature, preprints, and patents.
Leverage AI-powered comparisons to identify the best approaches, streamlining your research process and uncovering valuable insights.
Explore related terms and techniques, such as Propidium iodide (PI), a fluorescent dye used to stain DNA and assess cell cycle progression, and BenchMark XT, an automated immunohistochemistry (IHC) system.
Incorporate radioactive [γ-32P]ATP to study protein phosphorylation, and utilize antibiotics like Penicillin and Streptomycin to maintain cell culture conditions.
Measure expression levels with β-actin as a loading control, and supplement your cell culture media with Fetal Bovine Serum (FBS) to support cell growth.
Analyze your data using GraphPad Prism 5, a powerful statistical software, and maintain your cell lines in M199 medium supplemented with DMSO as a solvent.
Stay ahead of the curve in Retinoblastoma Protein (RB) research with PubCompare.ai's AI-driven platform, where you can effortlessly access the latest protocols, compare methodologies, and uncover groundbreaking insights to accelerate your discoveries.