Adenoviruses harboring murine wildtype (WT) FoxO1 (Ad-FoxO1-WT), FoxO1(3A/LXXAA) (Ad-3A/LXXAA) 13 (link), Sirt1 (Ad-Sirt1) 8 (link), shRNA Sirt1 (Ad-sh-Sirt1) 10 (link), shRNA Scramble (Ad-sh-Scr)10 (link), GFP-LC3 (Ad-GFP-LC3) 2 (link), tandem fluorescent mRFP-GFP-LC3 14 (link) (Ad-tf-LC3) 15 , tTA (Ad-tTA) 16 (link), and LacZ (Ad-LacZ) 16 (link) have been described. Adenovirus harboring inducible p300 (Ad-p300) was purchased from Cell Biolabs. The plasmid constructs of hemagglutinin (HA) tagged human Rab7 (obtained from Missouri S&T cDNA Resource Center) and HA tagged WT FoxO3a (from Dr. Michael Greenberg) 17 (link) were used to generate adenoviruses Ad-HA-Rab7 and Ad-FoxO3-WT, respectively, using the Admax system (Microbix). Adenovirus harboring shRNA for FoxO1 (Ad-sh-FoxO1) was generated as previously described 2 (link) using the following hairpin forming oligo 5’ – CGCCAAACTCACTACACCATTTCAAGAGA ATGGTGTAGTGAGTTTGGCTTTTTA – 3’. The hairpin loop sequence is underlined. Adenovirus harboring control scramble shRNA (Ad-sh-Scr) has been described. 10 (link) Lentivirus (Lt) harboring sh-Rab7 (Lt-sh-Rab7) was purchased from Open Biosystems. For knockdown studies, adenoviral and lentiviral transduction was carried out for 96 hours, while overexpression models involved 24 hours of adenoviral transduction.
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SIRT1 protein, human
SIRT1 protein, human
SIRT1 protein is a member of the sirtuin family of NAD+-dependent protein deacetylases that play a key role in regulating cellular processes such as aging, apoptosis, and metabolism.
SIRT1 has been implicated in the pathogenesis of various diseases, including neurodegenerative disorders, cancer, and metabolic syndrome.
Researchers can leverage PubCompare.ai's AI-driven platform to enhance the reproducibility and accuracy of SIRT1 protein research by easily locating protocols from literature, preprints, and patents, and using AI-driven comparisons to identify the best protocols and products for their SIRT1 studies.
This user-friendly tool can help streamline the research process and improve the quality of SIRT1 protein-related findings.
SIRT1 has been implicated in the pathogenesis of various diseases, including neurodegenerative disorders, cancer, and metabolic syndrome.
Researchers can leverage PubCompare.ai's AI-driven platform to enhance the reproducibility and accuracy of SIRT1 protein research by easily locating protocols from literature, preprints, and patents, and using AI-driven comparisons to identify the best protocols and products for their SIRT1 studies.
This user-friendly tool can help streamline the research process and improve the quality of SIRT1 protein-related findings.
Most cited protocols related to «SIRT1 protein, human»
Adenoviruses
Adenovirus Vaccine
Cells
DNA, Complementary
EP300 protein, human
Hairpin Loop Sequence
Hemagglutinin
Homo sapiens
LacZ Genes
Lentivirus
Mus
Oligonucleotides
Plasmids
Short Hairpin RNA
SIRT1 protein, human
A previously described SirT1 targeting construct, KOII [23 (link)], was used to generate mice harboring a conditional targeted mutation in the SirT1 gene (SirT1co/co mice) (see Additional file 1). The breeding of SirT1co/co mice and CMV-Cre transgenic mice results in mice harboring a germline-transmitted deletion of exon 4 of the SirT1 gene (SirT1+/ko mice). Both SirT1co/co mice and SirT1+/co mice were used to establish breeding colonies for generating SirT1co/co and SirT1ko/ko mice, respectively. Both SirT1co/co mice and SirT1ko/ko mice were in a mixed 129SvJ/C57B6 background. Mice were housed in a special-pathogen-free facility and all procedures were approved by the University of Washington Animal Care and Use Committee. A PCR-based genotyping method was established to identify the wild-type, co, and ko loci of the SirT1 gene using three primers: 5' co primer, 5'-GGTTGACTTAGGTCTTGTCTG; 5' ko primer, 5'-AGGCGGATTTCTGAGTTCGA; 3' primer, 5'-CGTCCCTTGTAATGTTTCCC. Murine embryonic fibroblasts (MEFs) were isolated from the embryos between embryonic day 12.5 and embryonic day 14.5. The body weight was measured once a week.
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Animals
Body Weight
Deletion Mutation
Embryo
Exons
Fibroblasts
Genes, vif
Genetic Loci
Genotyping Techniques
Germ Line
Mice, Laboratory
Mice, Transgenic
Mus
Mutagenesis, Site-Directed
Oligonucleotide Primers
Pathogenicity
SIRT1 protein, human
All cDNAs were made according to standard methods and verified by sequencing. The full-length SKIP cDNA was amplified by PCR from a HeLa cDNA library and was inserted into the 5′-XhoI and 3′-BamHI or 3′-BglII sites of each vector. Expression plasmids for the SIRT1 wild type and point mutant (SIRT1 HY) are described elsewhere (19 (link)). For yeast two-hybrid screening, the full-length SIRT1 cDNA was inserted into the bait plasmid pBTM116 (LexA DBD vector). SIRT1 deletion mutants were created by PCR amplification and were also subcloned into pBTM116. For transient transfections, the Flag-tagged SIRT1 or SKIP gene was placed in the pcDNA3 vector. For the localization assay, GFP-tagged recombinant constructs were created in pEGFP-C3 (BD Biosciences, Palo Alto, CA, USA), respectively. For GST-fused proteins, pGEX4T-1 (Amersham Pharmacia Biotech, Piscataway, NJ, USA) was used.
Biological Assay
cDNA Library
Cloning Vectors
Deletion Mutation
DNA, Complementary
Genes
HeLa Cells
Hybrids
Plasmids
Proteins
Saccharomyces cerevisiae
SIRT1 protein, human
Transfection
Transients
The expression of mRNA was quantified by real-time PCR using the TaqMan probes (Life Technologies) in an Applied Biosystems 7300 Real-Time PCR system. Data were analyzed with the SDS Version1.3 software (Applied Biosystems) and normalized to Rpl19 RNA. Western blot images were detected with the use of the LI-COR Odyssey scanner and the Image studio 3.1 software (Li-Cor Biosciences, Lincoln, NE). The antibodies were purchased from Cell Signaling Technology: PARP (#9542), Acetylated-Lysine (#9814), FoxO3a (#12829), Beclin-1 (#3738), ATG3 (#3415), ATG101 (#13492), BNIP3 (#12396), ATG7 (#8558), mTOR (#2983), p-mTOR-S2448 (#5536), and p-mTOR-S2481 (#2974). The antibodies were purchased from Abcam: LC3B (ab51520), p62 (ab91526), ATG14 (ab139727), and TFEB (ab122910). The antibodies were purchased from Santa Cruz Biotechnology: ATG5 (sc-515347), β-actin (sc-47778), PPAR-γ (sc-7196), and PPAR-α (sc-9000). SIRT1 (#07–131) antibody was purchased from Millipore. The monoclonal antibody against human G6Pase-α was raised in mice using a peptide containing amino acid residues 227 to 268 in luminal loop 3 of human G6Pase-α [40 (link)]. Antigen injection, hybridoma generation, and clone screening were performed by A&G Pharmaceutical, Inc. Hybridoma clones were screened using the enzyme-linked immunosorbent assay (ELISA) on the immunogen. The culture supernatant from a hybridoma clone (3A9) showing high sensitivity to the immunogen was subjected to affinity purification using the peptide coupled agarose. The specificity of the purified antibody was confirmed by ELISA.
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Actins
Amino Acids
Antibodies
Antibody Specificity
Antigens
BECN1 protein, human
Chromatography, Affinity
Clone Cells
Enzyme-Linked Immunosorbent Assay
FRAP1 protein, human
Homo sapiens
Hybridomas
Hypersensitivity
Immunoglobulins
Lysine
Monoclonal Antibodies
Mus
Peptides
Peroxisome Proliferator-Activated Receptors
Pharmaceutical Preparations
Phenobarbital
PPAR gamma
Real-Time Polymerase Chain Reaction
RNA, Messenger
Sepharose
SIRT1 protein, human
TFEB protein, human
Western Blotting
Endothelial cells were freshly isolated from human umbilical cord veins as previously described [13] (link) and cultured in M200 medium. Cells between the third and the sixth passages were grown in monolayers in a humidified atmosphere of 5% CO2 at 37°C, and used for experiments at >80% confluence. Replication-defective adenoviral vectors expressing SIRT1 (Ad-SIRT1) or control green fluorescentprotein (Ad-GFP) were prepared using the AdEasy vector kit (Quantum Biotechnologies) in according to the manufacturer's instructions. The adenovirus-mediated knockdown of SIRT1 (Ad-SIRT1 RNAi) and control vector (Ad-U6) were generated using the same system. The SIRT1 RNAi sequence was reported previously [21] (link). HUVECs were infected with the above adenovirus for 24 h and were cultured in fresh M200 for further treatment. PMA, Ionomycin, cyclosporin A, resveratrol, sirtinol, NFAT inhibitor, and NF-κB inhibitor JSH-23 were purchased from Sigma-Aldrich.
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Adenoviruses
Adenovirus Vaccine
Atmosphere
Cells
Cloning Vectors
Cone-Rod Dystrophy 2
Culture Media
Cyclosporine
DNA Replication
Endothelial Cells
Homo sapiens
I-kappa B Proteins
Ionomycin
JSH 23
M-200
Resveratrol
RNA Interference
SIRT1 protein, human
sirtinol
Umbilical Cord
Umbilical Vein
Veins
Most recents protocols related to «SIRT1 protein, human»
Flag-CDC42 was created by cloning human CDC42 protein ORF (GenBank: NM_001039802.2) into a pCDH-Flag vector using EcoRI and NotI restriction sites. Point mutations of CDC42 were generated by using the KOD-plus-mutagenesis Kit (#SMK101, TOYOBO). GST-CDC42 was generated by cloning human CDC42 ORF (GenBank: NM_001039802.2) into a pGEX-4T-1 vector using BamHI and NotI restriction sites. HA-PAK4 and HA-PAK1 were constructed by cloning human PAK4 protein ORF (GenBank: NM_001014831.3) or PAK1 protein ORF (GenBank: NM_001128620.2) into a pKH3-HA vector using HindIII and XbaI restriction sites. Myc-Gcn5, HA-PCAF, HA-Tip60, HA-ACAT1, HA-SIRT2 and HA-SIRT1 were gifts from Prof. Shi-Min Zhao (School of Life Sciences and Institutes of Biomedical Sciences, Fudan University, Shanghai, China). HA-CBP and HA-p300 were gifts from Prof. Jian-Xiu Yu (Shanghai Jiao Tong University School of Medicine, China). V5-HDAC3, V5-HDAC6, V5-HDAC10, shRNA-CDC42 and shRNA-SIRT2 were purchased from DNA library (Shanghai Jiao Tong University School of Medicine, China).
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CDC42 protein, human
Cloning Vectors
Deoxyribonuclease EcoRI
DNA Library
EP300 protein, human
Gifts
HDAC10 protein, human
KAT5 protein, human
Mutagenesis
PAK1 protein, human
PAK4 protein, human
Point Mutation
Proteins
Short Hairpin RNA
SIRT1 protein, human
SIRT2 protein, human
Lentivirus overexpressing mouse IKKβ, METTL3, METTL14, KAT2A, KAT2B, SIRT1, SIRT2, SIRT6, SIRT7, Spi2a, FTO or DERPINA3F, and human IKKβ, METTL14, KAT2B, SOCS1 or SERPINA3 were generated via cloning the coding region of mouse Ikkβ [NM_001159774.1], Mettl3 [NM_019721.2], Mettl14 [NM_201638.2], Kat2a [NM_020004.5], Kat2b [NM_020005.4], Sirt1 [NM_019812.3], Sirt2 [NM_022432.4], Sirt6 [NM_181586.4], Sirt7 [NM_153056.3], Spi2a [NM_009251.2], Fto [NM_011936.2], Serpina3f [NM_001168294.1] cDNA or human METTL14 [NM_020961.4], SOCS1 [NM_003745.1], IKKβ [NM_001556.3], KAT2B [NM_003884.5], SERPINA3 [NM_001085.5] cDNA into pLV[Exp]-Neo-EF1A lentiviral vector (VectorBuilder). Next, using these vectors as templates, an HA tag was added in the N-terminal of Kat2b, Spi2a, SERPINA3; a Flag tag was added in the N-terminal of Kat2a; a His tag was added in the N-terminal of Mettl14, Ikkβ, and IKKβ. Site-specific mutation of METTL14 and METTL3 was constructed by a QuickChange Site-Directed Mutagenesis Kit (Agilent) based on the manufacturer’s protocols. Packaging plasmids and lenti-vector were co-transfected into HEK293T cells. 48 h after transfection, lentivirus was collected from the cell culture medium and added into macrophages with 4 µg/ml polybrenes. The fragment bearing m6A site in the cDNA of Spi2a was subcloned to the downstream of Luc gene of luciferase reporter vector pGL3-Promoter (Promega, Cat#: 200517) to generate the pGL3-Spi2a plasmid. pGL3-Spi2a-Mut was generated by mutating the m6A motif sequence 5’GAA CC3’ to 5’GAT CC3’ in pGL3-Spi2a plasmid using the Mutagenesis Kit above. All of the mutations were confirmed by DNA sequencing. Primers were listed in Supplementary Table 1 .
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Cell Culture Techniques
Cells
Cloning Vectors
Culture Media
DNA, Complementary
Genes, Reporter
Homo sapiens
IkappaB Kinase beta
Lentivirus
Luciferases
Macrophage
METTL3 protein, human
METTL14 protein, human
Mice, Laboratory
Mutagenesis
Mutagenesis, Site-Directed
Mutation
Oligonucleotide Primers
Paragangliomas 3
Plasmids
Promega
SIRT1 protein, human
SIRT2 protein, human
sirtuin 6 protein, human
Transfection
The paraffin-embedded sections were dewaxed, rehydrated, and blocked using 5% goat serum albumin for 1 h. They were then incubated overnight at 4°C with anti-SIRT1 (1 : 1000, Abcam) and anti-GRP78 (1 : 300, Proteintech) primary antibodies, followed by incubation with Alexa Fluor-488 secondary antibody (1 : 500, Invitrogen) and DAPI. The images were visualized on a fluorescent microscope, and the mean fluorescence intensity was analyzed in each field.
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alexa fluor 488
Antibodies
DAPI
Fluorescence
Glucose Regulated Protein 78 kDa
Goat
Immunoglobulins
Microscopy
Paraffin
Serum Albumin
SIRT1 protein, human
Mammalian expression vectors for FLAG-tagged human wildtype FBXO7 isoform-1 and its F-box deleting mutant were provided by Dr H.J. Kuiken (The Netherlands Cancer Institute). The mammalian expression vector for V5/His-tagged human wildtype SIRT7 was provided by Dr K.Y. Choi (Pohang University of Science and Technology). Plasmids encoding FLAG-tagged SIRT2, SIRT3, SIRT4, and SIRT7 were kindly provided by H.S. Kim (Ewha Womans University). Plasmids encoding FLAG-tagged SIRT1, SIRT5, and SIRT6 were provided by Y.J. Oh (Yonsei University). All plasmid sequences were verified using DNA sequencing (Bionics). siRNAs for FBXO7, SIRT7, and CUL1, and control scrambled siRNA (catalog no.: 51-01-14-04) were designed and synthesized by Integrated DNA Technologies (Hanam-si). FBXO7-specific siRNA duplex sequences were 5′-UUGGUUCUCCUCUAGAUUGAAGU(dTdT)-3′ (sense) and 5′-ACUUCAAUCUAGAGGAGAACCAA(dTdT)-3′ (antisense). SIRT7-specific siRNA duplex sequences were 5′-GUGUGAACUUUAUAGAAU(dTdT)-3′ (sense) and 5′-AGAGAGGAUUCUAUAAAG(dTdT)-3′ (antisense). The CUL1-specific siRNA duplex sequences were 5′-CAGGUUUACCUUCAUGAAAGCACAC(dTdT)-3′ (sense) and 5′-GUGUGCUUUCAUGAAGGUAAACCUGAA(dTdT)-3′ (antisense).
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Cloning Vectors
CUL1 protein, human
Homo sapiens
Malignant Neoplasms
Mammals
Plasmids
Protein Isoforms
RNA, Small Interfering
SIRT1 protein, human
SIRT2 protein, human
Sirtuin 3
sirtuin 6 protein, human
After 48-h treatment, the total protein of gastrocnemius samples and C2C12 myotubes were isolated by RIPA (Beyotime Biotechnology, Haimen, China). Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was conducted, and the protein was transferred to polyvinylidene fluoride membranes (BioSharp, Tallinn, Estonia). After being blocked, the membranes were incubated with primary and secondary antibody, successively. Finally, an ECL Kit (Sangon Biotech, Shanghai, China) was used for the detection of protein bands. The antibodies were purchased from Abcam (Cambridge, UK), including p-adenosine 5’-monophosphate-activated protein kinase (AMPK; 1:1,000 and 1:2,000), silent information regulator factor 2-related enzyme 1 (SIRT1) (1:2,000), hypoxia-inducible factor-1α (HIF-1α; 1:500), p-phosphatidylinositol-4,5-bisphosphate 3-kinase (PI3K; 1:2,000 and 1:1,000), p-protein kinase B (AKT; 1:2,000 and 1:1,000), cleaved caspase-3 (C-caspase 3) (1:1,000), B-cell lymphoma-2 (Bcl2, 1:1,000), GAPDH (1:5,000), and goat anti-rabbit immunoglobin G (IgG; H + L) horseradish peroxidase antibody (1:10,000).
Adenosine Monophosphate
anti-IgG
Antibodies
B-Cell Lymphomas
BCL2 protein, human
Caspase 3
Enzymes
GAPDH protein, human
Goat
HIF1A protein, human
Horseradish Peroxidase
Immunoglobulins
Muscle, Gastrocnemius
OCA2 protein, human
Phosphatidylinositol 3-Kinases
Phosphatidylinositols
Phosphotransferases
polyvinylidene fluoride
Proteins
Rabbits
Radioimmunoprecipitation Assay
SDS-PAGE
SIRT1 protein, human
SIRT2 protein, human
Skeletal Myocytes
Tissue, Membrane
Top products related to «SIRT1 protein, human»
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Lipofectamine 2000 is a cationic lipid-based transfection reagent designed for efficient and reliable delivery of nucleic acids, such as plasmid DNA and small interfering RNA (siRNA), into a wide range of eukaryotic cell types. It facilitates the formation of complexes between the nucleic acid and the lipid components, which can then be introduced into cells to enable gene expression or gene silencing studies.
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PVDF membranes are a type of laboratory equipment used for a variety of applications. They are made from polyvinylidene fluoride (PVDF), a durable and chemically resistant material. PVDF membranes are known for their high mechanical strength, thermal stability, and resistance to a wide range of chemicals. They are commonly used in various filtration, separation, and analysis processes in scientific and research settings.
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SIRT1 is a nicotinamide adenine dinucleotide (NAD+)-dependent protein deacetylase enzyme. It plays a key role in the regulation of cellular processes by deacetylating target proteins.
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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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The BCA protein assay kit is a colorimetric-based method for the quantitative determination of total protein concentration in a sample. It uses bicinchoninic acid (BCA) to detect and quantify the presence of protein.
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SIRT1 is a nicotinamide adenine dinucleotide (NAD)-dependent protein deacetylase enzyme. It plays a role in the regulation of cellular processes such as apoptosis, senescence, and metabolism.
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SIRT1 is a nicotinamide adenine dinucleotide (NAD)-dependent protein deacetylase enzyme. It regulates various cellular processes, including gene expression, metabolism, and stress response, by deacetylating target proteins.
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RIPA lysis buffer is a detergent-based buffer solution designed for the extraction and solubilization of proteins from cells and tissues. It contains a mixture of ionic and non-ionic detergents that disrupt cell membranes and solubilize cellular proteins. The buffer also includes additional components that help to maintain the stability and activity of the extracted proteins.
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The BCA Protein Assay Kit is a colorimetric detection and quantification method for total protein concentration. It utilizes bicinchoninic acid (BCA) for the colorimetric detection and quantification of total protein. The assay is based on the reduction of Cu2+ to Cu1+ by protein in an alkaline medium, with the chelation of BCA with the Cu1+ ion resulting in a purple-colored reaction product that exhibits a strong absorbance at 562 nm, which is proportional to the amount of protein present in the sample.
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TRIzol reagent is a monophasic solution of phenol, guanidine isothiocyanate, and other proprietary components designed for the isolation of total RNA, DNA, and proteins from a variety of biological samples. The reagent maintains the integrity of the RNA while disrupting cells and dissolving cell components.
More about "SIRT1 protein, human"
The SIRT1 (Sirtuin 1) protein is a member of the sirtuin family of NAD+-dependent protein deacetylases.
These enzymes play a crucial role in regulating various cellular processes, including aging, apoptosis (programmed cell death), and metabolism.
SIRT1 has been implicated in the pathogenesis of numerous diseases, such as neurodegenerative disorders, cancer, and metabolic syndrome.
Researchers can leverage the AI-driven platform of PubCompare.ai to enhance the reproducibility and accuracy of their SIRT1 protein research.
This user-friendly tool allows researchers to easily locate protocols from literature, preprints, and patents, and then use AI-driven comparisons to identify the best protocols and products for their SIRT1 studies.
This can help streamline the research process and improve the quality of SIRT1 protein-related findings.
When conducting SIRT1 protein research, researchers may utilize various techniques and reagents, such as Lipofectamine 2000 for transfection, PVDF (polyvinylidene fluoride) membranes for Western blotting, fetal bovine serum (FBS) for cell culture, BCA (bicinchoninic acid) protein assay kit for protein quantification, RIPA (radioimmunoprecipitation assay) lysis buffer for protein extraction, and TRIzol reagent for RNA extraction.
By combining these tools with the insights from PubCompare.ai's AI-driven platform, researchers can enhance the reproducibility and accuracy of their SIRT1 protein-related studies, leading to more reliable and impactful findings.
These enzymes play a crucial role in regulating various cellular processes, including aging, apoptosis (programmed cell death), and metabolism.
SIRT1 has been implicated in the pathogenesis of numerous diseases, such as neurodegenerative disorders, cancer, and metabolic syndrome.
Researchers can leverage the AI-driven platform of PubCompare.ai to enhance the reproducibility and accuracy of their SIRT1 protein research.
This user-friendly tool allows researchers to easily locate protocols from literature, preprints, and patents, and then use AI-driven comparisons to identify the best protocols and products for their SIRT1 studies.
This can help streamline the research process and improve the quality of SIRT1 protein-related findings.
When conducting SIRT1 protein research, researchers may utilize various techniques and reagents, such as Lipofectamine 2000 for transfection, PVDF (polyvinylidene fluoride) membranes for Western blotting, fetal bovine serum (FBS) for cell culture, BCA (bicinchoninic acid) protein assay kit for protein quantification, RIPA (radioimmunoprecipitation assay) lysis buffer for protein extraction, and TRIzol reagent for RNA extraction.
By combining these tools with the insights from PubCompare.ai's AI-driven platform, researchers can enhance the reproducibility and accuracy of their SIRT1 protein-related studies, leading to more reliable and impactful findings.