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Thionins

Thionins are a family of small, cysteine-rich, antimicrobial peptides found in plants.
They play a role in plant defense against pathogens and pests.
Thionins exhibit a wide range of biological activities, including anti-fungal, anti-bacterial, and insecticidal properties.
Researching thionins can provide insights into plant-pathogen interactions and lead to the development of new biopesticides or antimicrobial agents.
PubCompare.ai's AI-driven platform can helpe streamline your thionins research by locating relevant protocols, performing intelligent comparisons, and optimizing your workflow to enhance reproducibility.

Most cited protocols related to «Thionins»

Detailed methodology for producing the rat brain atlas is provided in the first three editions (Swanson, 1992, 1998, 2004) that are available as open access legacy resources (Swanson, 2015b) at larrywswanson.com. Briefly, after many attempts (starting in 1974) to obtain a complete series of transverse histological sections suitable for an atlas, one was obtained in 1982 from a 315‐g adult male Sprague‐Dawley rat that had been perfused with 4% paraformaldehyde and embedded in celloidin to hold separate parts of sections in place during mounting. All procedures for rats complied with NIH and institutional guidelines current from 1974 to 1982; the work on the atlas brain was done at the Salk Institute for Biological Studies, La Jolla, CA. Every section through the brain was collected, stained, and mounted; the first 133 sections through the olfactory bulbs were 30 µm thick, whereas the last 423 sections through the rest of the brain were 40 µm thick. The sections were stained with thionin and covered with DPX.
Because celloidin‐embedded tissue shrinks considerably and differentially in the rostro‐caudal, medio‐lateral, and dorso‐ventral dimensions, two Cartesian coordinate systems for the sections were produced. The first is a strictly physical coordinate system, corresponding to dimensions in the tissue sections themselves. The second is a stereotaxic coordinate system that ideally would be based on the dimensions of the brain within the skull of the intact, living animal. Fortunately, this brain was cut in virtually the same transverse plane as the stereotaxic rat brain atlas of Paxinos and Watson (1986), based on unembedded, frozen‐sectioned brains that suffered very little shrinkage. Because researchers have found the stereotaxic coordinates in Paxinos and Watson (1986) to be the best available, they were adopted for our brain as the second set of coordinates.
Photomicrographs of selected histological sections were obtained by placing the sections in an Omega enlarger with a point light source, projecting an image of the section onto a 4 × 5 inch sheet of Kodak Kodalith Ortho (2556) film, developing the film in Kodak Kodalith fine line developer, and printing with a Durst enlarger and Schneider Kreuzanch Componon‐S lens (f/150 mm) on 11 × 14 inch sheets of Kodak Kodabrome II RC paper, contrast grade F5. After 35 years, these thick celloidin sections are unsuitable for high resolution digital scanning because they are not completely flat and because the DPX has retracted in places, creating random “bubbles” of air between tissue section and coverslip. However, most areas of the sections remain suitable for microscopic examination.
Publication 2018
Adult Animals Biopharmaceuticals Brain Celloidin Cranium Lens, Crystalline Light Males Microscopy Olfactory Bulb paraform Photomicrography Physical Examination Rats, Sprague-Dawley Thionins Tissues
Seven days after MPTP intoxication, mice were sacrificed and their brains fixed, embedded, and processed for tyrosine hydroxylase (TH) and thionin staining as described previously (Benner et al., 2004 (link); Ghosh et al., 2007 (link)). Total numbers of TH- and Nissl-stained neurons in SNpc were counted stereologically with stereo investigator software (MicroBrightfield, Williston, VT) by using an optical fractionator (Benner et al., 2004 (link); Ghosh et al., 2007 (link)). Quantitation of striatal TH immunostaining was performed as described (Benner et al., 2004 (link); Ghosh et al., 2007 (link)). Optical density measurements were obtained by digital image analysis (Scion, Frederick, MD). Striatal TH optical density reflected dopaminergic fiber innervation. For immunofluorescence staining on fresh frozen sections, rat anti-mouse CD11b (1:100), goat anti-mouse GFAP (1:100), rabbit anti NF-κB p65 (1:100), goat anti-NF-κB p65 (1:100), rabbit anti NF-κB p50 (1:100), and rabbit anti-mouse iNOS (1:250) were used. The samples were mounted and observed under a Bio-Rad MRC1024ES confocal laser scanning microscope.
Publication 2009
1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine Brain Fibrosis Frozen Sections Glial Fibrillary Acidic Protein Goat Hydrochloride, Dopamine Immunofluorescence ITGAM protein, human Mice, House Microscopy, Confocal Neurons NF-kappa B p50 Subunit NOS2A protein, human Rabbits RELA protein, human Striatum, Corpus Thionins Tyrosine 3-Monooxygenase Vision
Ten male Long-Evans (5–8 months old) and 2 male Sprague-Dawley rats (350–500g; 5–8 months) were used in these experiments. Behavioral training, surgery details and data obtained from subgroups of the present rats have been reported earlier (Csicsvari et al., 2002; Diba and Buzsaki, 2007 (link); Montgomery et al., 2009 (link); Mizuseki et al., 2009 (link)). After maze training, recording and stimulation electrodes were implanted. In six rats, a 96-site silicon probe was implanted in the right hemisphere parallel to the transverse axis of the hippocampus (45° parasagittal). These probes had recording sites spaced regularly over a 1.5mm × 1.5mm area with 6 shanks spaced at 300 μm, each with 16 recording sites at 100μm spacing. A bipolar stimulating electrode was implanted into the angular bundle (perforant path) at AP 1.0 mm, ML 1.0 mm from the junction between lambda and the right lateral ridge and DV 3.5 mm from the dura. Another stimulating electrode was implanted in the ventral hippocampal commissure at AP 1.2mm, ML 1.0mm from bregma and 3.8mm from the dura (Csicsvari et al., 2000 (link); Montgomery et al., 2009 (link)). Three other rats were implanted with 32- and/or 64-site silicon probes in the left or right dorsal hippocampus. The silicon probes, consisting of 4 or 8 individual shanks (spaced 200 μm apart) each with 8 staggered recording sites (20 μm spacing), were lowered to CA1, CA3 pyramidal cell layers (Diba and Buzsaki, 2007 (link)) and dentate gyrus. Additional 3 rats were implanted with a 4-shank silicon probe in the right dorsocaudal medial entorhinal cortex (EC; Hafting et al., 2005) and another 4- or 8-shank probe into the CA1-dentate axis (Mizuseki et al., 2009 (link)). All silicon probes were attached to a microdrive, which allowed precise positioning of the probe tips into the desired layer. Two stainless steel screws inserted above the cerebellum were used as indifferent and ground electrodes during recordings.
Postmortem electrode location was verified using thionin, fluorescent Nissl (Invitrogen), or DAPI (Invitrogen) staining in combination with DiI (Invitrogen)-labeled electrode tracks. The histological reconstruction of the electrode tracks is available in Montgomery et al. (2008; 2009) (link). All protocols were approved by the Institutional Animal Care and Use Committee of Rutgers University.
Publication 2011
5-((4-(4-(diethylamino)butyl)-1-piperidinyl)acetyl)-10,11-dihydrobenzo(b,e)(1,4)diazepine-11-one Apathy Autopsy CA3 Pyramidal Cell Area Cerebellum Commissure of Fornix DAPI Dura Mater Entorhinal Area Epistropheus Gyrus, Dentate Institutional Animal Care and Use Committees Males MAZE protocol Operative Surgical Procedures Perforant Pathway Rats, Sprague-Dawley Rattus Reconstructive Surgical Procedures Seahorses Silicon Stainless Steel Thionins

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Publication 2012
Brain Buffaloes Buffers Central Nervous System Cloning Vectors Cortex, Cerebral Cortodoxone Cryoultramicrotomy Drug Overdose Gelatins Kidney Cortex Microscopy Monkeys Neurons Normal Saline paraform Pentobarbital Phosphates Sucrose Thionins Tissues Vision
Age- and sex-matched PGRN-deficient mice and their WT littermates were anesthetized with sodium pentobarbital and transcardially perfused with 0.9% saline followed by 4% paraformaldehyde (PFA) in PBS, pH 7.4. The brains were dissected out, postfixed in 4% PFA for 24 h, and cryopreserved in 30% sucrose/PBS for 48 h. Snap-frozen brains were embedded in tissue embedding freezing medium and sectioned at a 40-µm thickness using a cryostat. Coronal sections were collected in PBS and processed free floating for immunohistochemistry.
Coronal brain sections spanning the cortex, thalamus, and hippocampus were washed in PBS, and endogenous peroxidase was quenched by incubation in 3% hydrogen peroxide/10% methanol solution for 10 min. Sections were washed in PBS and blocked in 10% normal goat serum (NGS), 0.1% Triton X-100 in PBS for 1 h at room temperature. Next, sections were incubated with various antibodies: rabbit anti-PGRN (1:1,000; Zhu et al., 2002 (link)), rat monoclonal anti-CD68 (1:500; AbD Serotec), mouse monoclonal antiubiquitin (1:50,000; Millipore), rabbit polyclonal anti-GFAP (1:2,000; Dako), mouse monoclonal anti–phospho–TDP-43 (pS409/410; 1:500; provided by H. Akiyama, M. Hasegawa, and T. Arai, Tokyo Institute of Psychiatry, Tokyo, Japan; Inukai et al., 2008 (link)), and rabbit polyclonal anti–TDP-43 (Proteintech) in 2% NGS, 0.01% Triton X-100 in PBS for 16 h at 4°C. Sections were washed in PBS and incubated with appropriate biotinylated secondary antibodies (Jackson ImmunoResearch Laboratories, Inc.) in PBS for 1 h at room temperature. After incubation in streptavidin ABC enhancer solution (Vector Laboratories) for 30 min at room temperature, immunostaining was visualized with diaminobenzidine (DAB; Sigma-Aldrich) as the chromogen. Sections were washed and mounted on precoated slides (Superfrost Plus; VWR) and allowed to air dry. The sections were further counterstained with either cresyl violet acetate or thionin (Sigma-Aldrich). The slides were dehydrated in ascending series of ethanol, passed through xylene, and coverslipped with DPX mounting media (Electron Microscopy Science). Images were acquired using a digital camera (Coolpix 5000; Nikon).
Publication 2010
Antibodies azo rubin S Brain Cloning Vectors Cortex, Cerebral cresyl violet acetate Electron Microscopy Ethanol Fingers Glial Fibrillary Acidic Protein Goat Immunohistochemistry Methanol Mice, House Normal Saline paraform Pentobarbital Sodium Peroxidase Peroxides protein TDP-43, human Rabbits Seahorses Serum Streptavidin Sucrose Thalamus Thionins Tritium Triton X-100 Xylene

Most recents protocols related to «Thionins»

The unicellular green alga C. reinhardtii strain CC-125 cells (1.5 × 106) were cultured in 50 mL liquid tris-acetate-phosphate (TAP) media in 250 mL flasks (Harris, 1989 ) by shaking at 25°C and 140 rpm under constant white light of 90–100 μmol photons m−2 s−1. In addition to the wild type (WT), two transgenic C. reinhardtii lines (AtTHI-OE1 and AtTHI-OE2) harboring the Arabidopsis thaliana Thionin 2.1 gene, which encodes antibacterial peptides, thionins, were used to investigate genotype-dependent radiation-sensitivity. Cells were harvested at 800 × g, dispensed, and subjected to X- or γ-irradiation as described below. The subsequent post-irradiation cultivations of the cells were performed in 10 mL fresh TAP media in 50 mL conical tubes, with an initial optical density of 0.05 at 750 nm for mock (or control) under the same culture conditions. The basal TAP medium was supplemented with 5 or 10 mM NaHCO3 to evaluate the synergistic effect of X-rays and sodium bicarbonate on cell growth.
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Publication 2023
Acetate Animals, Transgenic Anti-Bacterial Agents Arabidopsis thalianas Bicarbonate, Sodium Cells G-800 Genes Genotype Light M 140 Peptides Phosphates Radiation Tolerance Radiotherapy Strains Thionins Tromethamine X-Rays, Diagnostic
Queenright Strumigenys colonies were collected from the field in various sites in Taiwan (locality information in Table 1 and Table 2). They were transferred to artificial nests in the laboratory that consisted of a round plastic tray with a diameter of 21.5 cm and a floor cover made of plaster of Paris to provide moisture. The colonies were reared under a 12:12 (L:D) photoperiod at 24 ± 2 °C in an incubation room. Springtails (Cyphoderus albinus) were provided as food ad libitum while a glass tube with water and cotton was provided to keep sufficient humidity. The trays were covered with a plastic lid to prevent escape by the ants and the springtails. We assured that alate queens (F1 generation) were virgin by raising them in the strict absence of males in the source colonies (F0 generation). Experimental colonies were created, each consisting of 1 alate queen (F1 queen) and 15 nestmate workers. Colony development (Table 1) was recorded twice a week during an experimental period of 28 weeks to monitor whether virgin queens can lay eggs that thelytokously develop into workers and/or queens (for S. membranifera, the total experimental period was 202 weeks). The virgin condition of all alate queens was verified by dissecting them at the end of the experimental period, which confirmed that their spermatheca was empty. To obtain additional evidence of whether mated queens occur, we dissected field-collected dealate queens for examination of their ovaries and spermatheca contents (Table 2).
Histological and ultrastructural examination was performed on queens of the thelytokous S. emmae, S. liukueiensis, S. rogeri and S. solifontis, as well as on the non-thelytokous S. lacunosa (Lugu Township, Nantou County, Taiwan), S. nanzanensis (Lanyu Township, Taitung County, Taiwan), S. sauteri (Lugu Township, Nantou County, Taiwan) and S. sydorata (Bogor, Indonesia) for comparison. The posterior part of the gaster was cut off and fixed in 2% glutaraldehyde (Agar Scientific, Stansted, UK) buffered with 50 mM Na-cacodylate (Agar Scientific, Stansted, UK) and 150 mM saccharose (pH 7.3). Postfixation was carried out in 2% osmium tetroxide (Agar Scientific, Stansted, UK) in the same buffer and was followed by dehydration in a graded acetone series and embedding in Araldite (Polysciences, Warrington, PA, USA and Merck, Darmstadt, Germany). Longitudinal serial semithin sections of 1 µm thickness were made with a Leica EM UC6 ultramicrotome (Leica, Wetzlar, Germany). They were stained with methylene blue and thionin (Merck, Darmstadt, Germany) and examined with an Olympus BX-51 microscope (Olympus, Tokyo, Japan). Thin sections of 70 nm were double-stained with lead citrate (Merck, Darmstadt, Germany) and uranyl acetate (Polysciences, Warrington, PA, USA) and were examined with a Zeiss EM900 electron microscope (Zeiss, Oberkochen, Germany).
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Publication 2023
Acetone Agar Ants araldite Buffers Cacodylate Citrate Dehydration Eggs Electron Microscopy Food Glutaral Gossypium Humidity Males Microscopy Microtomy Osmium Tetroxide Ovary Plaster of Paris Stomach Sucrose Thionins Ultramicrotomy uranyl acetate Workers
After the marmosets had performed all the experiments, including the pre- and post-lesion sessions, they were deeply anesthetized and transcardially perfused with 4% paraformaldehyde in phosphate buffer (pH 7.4). The fixed brains were removed from the skull, postfixed in the same fresh fixative overnight at 4°C, and placed into 0.1 M phosphate buffer (pH 7.4) containing 30% sucrose. The brains were then cut along the coronal plane into 50 μm thickness slices using a freezing microtome. One section out of six was immediately mounted for thionin staining. For immunohistochemistry, adjacent sections were incubated with a mouse monoclonal antibody for glial fibrillary acidic protein (1:1,500 dilution; Sigma-Aldrich, St. Louis, MO, USA) or a rabbit polyclonal antibody for Iba-1 (1:4,000 dilution; WAKO Pure Chemical Industries, Osaka, Japan). Secondary biotinylated anti-mouse (1:200 dilution; Vector Laboratories, Burlingame, CA, USA) or biotinylated anti-rabbit (1:200 dilution; Vector Laboratories) antibodies were also used. Immunoreactive signals were visualized using the ABC Staining Kit (Vector Laboratories) with 3,3'-diaminobenzidine. All stained images were acquired using an inverted microscope (BZ-X700, Keyence, Osaka, Japan).
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Publication 2023
Antibodies Brain Buffers Callithrix Cloning Vectors Cranium Fixatives Glial Fibrillary Acidic Protein Immunoglobulins Immunohistochemistry Mice, House Microscopy Microtomy Monoclonal Antibodies paraform Phosphates Rabbits Sucrose Technique, Dilution Thionins
Every 10th tissue section was selected, rinsed in phosphate buffer solution to remove cryoprotectant, and manually mounted on gel coated glass slides. Approximately 40 sections from each case underwent the Nissl staining. Mounted sections were dried for 24 h, then stained for thionin (Nissl) (Zilles et al., 2002 (link); Augustinack et al., 2005 (link)). The staining procedure was as follows: (1) defat [100% ethanol: chloroform (1:1)], (2) rinse [50% ethanol, then twice distilled water (ddH2O)], (3) pre-treatment [acetic acid: acetone: ddH2O: 100% ethanol (1:1:1:1)], (4) staining (5% aqueous thionin, sodium acetate stock, and acetic acid stock), and (5) differentiation (70% ethanol and glacial acetic acid). The slides were then dehydrated in ascending concentrations of ethanol, dipped in xylene to eliminate remaining water. Finally, slides were coverslipped using Permount (Fisher Scientific, Hampton, NH, USA).
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Publication 2023
Acetic Acid Acetone Buffers Chloroform Cryoprotective Agents Ethanol Phosphates Sodium Acetate Thionins Tissues Xylene
Details of the histology and preparation of cortical unfolded maps were previously described [35 (link)] and are only briefly summarized here.
Perfusion. Deeply anesthetized rats were intracardially perfused with 0.9% NaCl followed by 4% paraformaldehyde in 0.1 M sodium phosphate buffer (PB) after completing the vEEG monitoring (D182). The brain was removed from the skull and fixed in 4% paraformaldehyde for 4 h, cryoprotected in 20% glycerol in 0.02 M potassium phosphate-buffered saline (KPBS, pH 7.4) for 24 h, frozen in dry ice, and stored in −70 °C for further processing. Frozen coronal sections of the brain were cut (25-µm thick, 1-in-12 series) using a sliding microtome. The first series of sections was stored in 10% formalin at room temperature and used for thionin staining. Other series of sections were collected into tissue collection solution (30% ethylene glycol, 25% glycerol in 0.05 M PB) and stored at −20 °C until processed.
Nissl staining. The first series of sections was stained with thionin, cleared in xylene, and cover-slipped using Depex® (BDH Chemical, Poole, UK) as a mounting medium.
Preparation of cortical unfolded maps. To assess the cortical lesion area and the damage to different cytoarchitectonic cortical areas after TBI, thionin-stained sections were digitized (40×, Hamamatsu Photonics, Hamamatsu, Japan; NanoZoomer-XR, NDP.scan 3.2]. Unfolded cortical maps were then prepared from the digitized histologic sections as described in detail by [94 (link)] and by applying in-house software from https://unfoldedmap.org (accessed on 14 November 2022) adapted to the rat brain [95 (link)].
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Publication 2023
Brain Buffers Cortex, Cerebral Cranium Dry Ice Formalin Freezing Frozen Sections Glycerin Glycol, Ethylene Microtomy Microtubule-Associated Proteins Normal Saline paraform Perfusion Phosphates potassium phosphate Radionuclide Imaging Saline Solution sodium phosphate Thionins Xylene

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Thionin is a staining dye commonly used in biological and medical applications. It is a metachromatic dye that can bind to nucleic acids, allowing for the visualization of cellular structures under a microscope. Thionin is a simple, cost-effective staining solution that can be used in a variety of laboratory settings.
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Thionin is a biological stain primarily used in microscopy and histology. It is a purple-blue diazonium dye that selectively stains nucleic acids, such as DNA and RNA, within cells. Thionin is commonly used to visualize cellular structures and organelles in a variety of sample types, including tissue sections and cell cultures.
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Permount is a mounting medium used in microscopy to permanently mount specimens on glass slides. It is a solvent-based, xylene-containing solution that dries to form a clear, resinous film, securing the specimen in place and providing optical clarity for microscopic examination.
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The Cryostat is a specialized piece of laboratory equipment used for the sectioning of frozen tissue samples. It maintains a controlled low-temperature environment, enabling the precise and consistent cutting of delicate specimens for microscopic analysis and examination.
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Entellan is a mounting medium for microscopy samples. It is designed to provide a transparent, long-lasting seal for the mounting of specimens on microscope slides.
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Thionin acetate is a laboratory staining dye used in various microscopy and cell biology applications. It is a component of staining solutions for the visualization and identification of cellular structures and tissues.
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More about "Thionins"

Thionins are a family of small, cysteine-rich, antimicrobial polypeptides found in plants.
These natural compounds play a crucial role in plant defense against pathogens and pests, exhibiting a wide range of biological activities such as antifungal, antibacterial, and insecticidal properties.
Researching thionins can provide valuable insights into plant-pathogen interactions and lead to the development of innovative biopesticides or antimicrobial agents.
Thionins, also known as plant defensins, are important plant-derived molecules that have been the subject of extensive scientific investigation.
These cysteine-rich peptides are found in a variety of plant species, including cereals, legumes, and nightshades.
Their unique structural features and potent biological activities have made them a focus of interest for researchers studying plant-pathogen interactions, natural product-based antimicrobials, and agricultural applications.
The study of thionins can be enhanced by leveraging advanced research tools and techniques.
Techniques like immunohistochemistry, using reagents like Permount, Stereo Investigator software, Cryostat, Entellan, and Thionin acetate, can help visualize the localization and distribution of thionins within plant tissues.
Additionally, the use of ABC reagent and SigmaFast DAB Peroxidase Substrate can facilitate the detection and quantification of thionins in biological samples.
The Axiophot photomicroscope is a valuable instrument for high-quality imaging and analysis of thionin-related experiments.
By utilizing these specialized tools and techniques, researchers can gain a deeper understanding of thionin structure, function, and interactions with pathogens.
This knowledge can inform the development of novel biopesticides, antimicrobial agents, and other biotechnological applications that harness the power of these plant-derived peptides.
Ultimately, the study of thionins holds great promise for advancing our understanding of plant defense mechanisms and driving innovation in the fields of agriculture, medicine, and beyond.