Phagosomes created by phagocytosing 759-nm-diameter latex beads were observed using differential interference contrast microscopy (Barak et al., 2013 (link), Barak et al., 2014 (link)). For further details, see sections 3 and 4 of Supplemental Experimental Procedures . Phagosome motion was visualized inside agar-flattened Dictyostelium cells (section 5, Supplemental Experimental Procedures ). Purification and in vitro motility of latex bead phagosomes has been described (Barak et al., 2014 (link)). Further details can be found in Supplemental Experimental Procedures (section 6). Phagosomes were prepared using silica beads or latex beads from J774, RAW264.7, or Dictyostelium cells. Purity of latex bead phagosomes was confirmed using markers against endosomal, cytosolic, and membrane proteins (Supplemental Experimental Procedures , section 6; Figure S2 ). Confocal imaging was used to detect proteins on the phagosome membrane. EPs/LPs were treated with filipin and imaged under epifluorescence illumination. Further details can be found in Supplemental Experimental Procedures , section 7 (for phagosomes from J774 and RAW cells) and section 9 (for phagosomes from Dictyostelium). Measurement of fluorescence intensity on phagosomes is described in Supplemental Experimental Procedures , section 8. Statistical hypothesis testing was done using Student’s t test. Two-tailed p values (95% confidence) were calculated. Error bars are SD or SEM, as indicated.
DRM isolation from purified phagosomes was done as described previously (Goyette et al., 2012 (link)). Further details can be found in in section 11 ofSupplemental Experimental Procedures . Lipids were extracted from phagosomes using a methanol-chloroform mixture for thin-layer chromatography (TLC) experiments. Silica TLC plates were used to separate the lipids with an appropriate solvent system, followed by visualization on a Bio-Rad instrument. Further details can be found in section 12 of Supplemental Experimental Procedures . MβCD prepared in buffer (30 mM Tris and 4 mM EGTA [pH 8.0]) was incubated with LPs (22°C, 15 min) at final concentrations ranging from 10 mM to 30 mM. Further details can be found in section 13 of Supplemental Experimental Procedures . LPG purified from Leishmania donovani (Turco et al., 1987 (link)) was obtained as a gift. The stock solution (in ddH2O) was diluted appropriately. LPs were incubated with LPG (22°C, 15 min) before observation (Dermine et al., 2005 (link)). Further details can be found in section 13 of Supplemental Experimental Procedures . Bead motility with dynein using an ATP releasate from Dictyostelium cells has been described elsewhere (Soppina et al., 2009b (link)). Further details can be found in section 14 of Supplemental Experimental Procedures . See Supplemental Experimental Procedures , section 12 for details of lipidomics measurements. PC and free cholesterol was measured on lipids obtained from EPs and LPs purified from RAW264.7 cells.
DRM isolation from purified phagosomes was done as described previously (Goyette et al., 2012 (link)). Further details can be found in in section 11 of
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