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Deoxyhemoglobin

Deoxyhemoglobin is the form of hemoglobin that lacks bound oxygen.
It is the primary oxygen carrier in the blood, transporting oxygen from the lungs to the body's tissues.
Deoxyhemoglobin is crucial for cellular respiration and energy production.
Understanding the dynamics and regulation of deoxyhemoglobin can provide insights into oxygenation, circulation, and metabolic processes.
Researching deoxyhemoglobin may lead to advancements in the diagnosis and treatment of various cardiovascular, respiratory, and hematological conditions.

Most cited protocols related to «Deoxyhemoglobin»

Dynamic Causal Modelling is a framework for fitting differential equation models of neuronal activity to brain imaging data using Bayesian inference. The DCM approach can be applied to functional Magnetic Resonance Imaging (fMRI), Electroencephalographic (EEG), Magnetoencephalographic (MEG), and Local Field Potential (LFP) data [22] (link). The empirical work in this paper uses DCM for fMRI. DCMs for fMRI comprise a bilinear model for the neurodynamics and an extended Balloon model [23] (link) for the hemodynamics. The neurodynamics are described by the following multivariate differential equation where indexes continuous time and the dot notation denotes a time derivative. The th entry in corresponds to neuronal activity in the th region, and is the th experimental input.
A DCM is characterised by a set of ‘exogenous connections’, , that specify which regions are connected and whether these connections are unidirectional or bidirectional. We also define a set of input connections, , that specify which inputs are connected to which regions, and a set of modulatory connections, , that specify which intrinsic connections can be changed by which inputs. The overall specification of input, intrinsic and modulatory connectivity comprise our assumptions about model structure. This in turn represents a scientific hypothesis about the structure of the large-scale neuronal network mediating the underlying cognitive function. A schematic of a DCM is shown in Figure 1.
In DCM, neuronal activity gives rise to fMRI activity by a dynamic process described by an extended Balloon model [24] for each region. This specifies how changes in neuronal activity give rise to changes in blood oxygenation that are measured with fMRI. It involves a set of hemodynamic state variables, state equations and hemodynamic parameters, . In brief, for the th region, neuronal activity causes an increase in vasodilatory signal that is subject to autoregulatory feedback. Inflow responds in proportion to this signal with concomitant changes in blood volume and deoxyhemoglobin content . Outflow is related to volume through Grubb's exponent
[20] (link). The oxygen extraction is a function of flow where is resting oxygen extraction fraction. The Blood Oxygenation Level Dependent (BOLD) signal is then taken to be a static nonlinear function of volume and deoxyhemoglobin that comprises a volume-weighted sum of extra- and intra-vascular signals [20] (link)
where is resting blood volume fraction. The hemodynamic parameters comprise and are specific to each brain region. Together these equations describe a nonlinear hemodynamic process that converts neuronal activity in the th region to the fMRI signal (which is additionally corrupted by additive Gaussian noise). Full details are given in [20] (link),[23] (link).
In DCM, model parameters are estimated using Bayesian methods. Usually, the parameters are of greatest interest as these describe how connections between brain regions are dependent on experimental manipulations. For a given DCM indexed by , a prior distribution, is specified using biophysical and dynamic constraints [20] (link). The likelihood, can be computed by numerically integrating the neurodynamic (equation 1) and hemodynamic processes (equation 2). The posterior density is then estimated using a nonlinear variational approach described in [23] (link),[25] (link). Other Bayesian estimation algorithms can, of course, be used to approximate the posterior density. Reassuringly, posterior confidence regions found using the nonlinear variational approach have been found to be very similar to those obtained using a computationally more expensive sample-based algorithm [26] (link).
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Publication 2010
BLOOD Blood Vessel Blood Volume Brain Cell Respiration Cognition deoxyhemoglobin Diencephalon Electroencephalography Hemodynamics Homeostasis Neurons Oxygen Vasodilation

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Publication 2014
A modified Beer–Lambert equation was used to convert raw fNIRS data to deoxyhemoglobin and oxyhemoglobin concentrations, and wavelet detrending was applied to these values. A fourth-degree polynomial was used to model and remove the baseline drift from the raw signal. For each participant, channels were automatically removed from the analysis if the root mean square of the raw data trace was 10 times that of the average for that participant. Comparisons between “clean” and “raw” data refer to data that did or did not undergo global mean removal, respectively. To generate the “clean” data, global systemic effects were removed using a spatial filter14 (link) prior to hemodynamic modeling. The assumption underlying the use of a spatial filter is that neural activity due to the task, in this case related to finger movements, would result in activity localized to the contralateral motor cortex. Therefore, any activity present across a larger area of the brain is most likely due to global systemic effects. The algorithm used here14 (link) utilizes PCA and a high-pass Gaussian spatial filter to remove components of the data that are present throughout the brain. Raw and clean data were reshaped into 4×4×4×133 images, and SPM8 was used for first-level general linear model (GLM) analysis.
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Publication 2017
Beer Brain deoxyhemoglobin Fingers Hemodynamics Motor Cortex Movement Nervousness Oxyhemoglobin Plant Roots
We quantified the anatomical connectivity using graph theoretical measures [23] where the in-degree and out-degree are the number of incoming and outgoing connections to/from a node. The degree is the sum of in- and out-degree. The clustering coefficient is the number of all existing connections between a node's neighbors divided by all such possible connections. The betweeness centrality is the fraction of the shortest path between any two pairs of nodes passing through a particular node.
The network model with the coupling term of strength c is implemented as: where ui, νi are the state variables of the ith neural population and fij is the connectivity matrix. White Gaussian noise nu(t), nν(t) is introduced additively. The functions g and h are based on FitzHugh-Nagumo systems [26] (link),[27] with and h(ui,νi) = −(1/τ)[uiα+i], and α = 1.05, β = 0.2, γ = 1.0, τ = 1.25. For the stability analysis (no noise) we employed Matlab DDE23 to solve the coupled delay differential equations. The coupled delay differential equations with additive noise were solved in Matlab by a simplified and faster algorithm. More specifically, we employed a standard fourth order Runge-Kutta method for integrating the intrinsic Fitz-Hugh Nagumo dynamics while the coupling and the stochastic terms were integrated using Euler method. The step size for the simulation was 0.001 and we confirmed that no better convergence of solution was achieved using smaller step sizes to ensure numerical convergence.
The time delays are computed from the Euclidean distance matrix dij of the locations of the brain areas i and j. To do so, the three-dimensional regional map locations were converted to approximate Talairach stereotaxic atlas locations by first identifying the mapping of regional map locations as designated on the human brain to the anatomical locations in Talairach space using the Anatomical Automatic Labeling (AAL) image provided by Tzourio-Mazoyer et al. [36] (link). Once the approximate location was identified in the AAL brain, the coordinate for the centre of the AAL region was used for the location of the corresponding regional map location. Each region was represented as a surface composed of a sufficient number of triangles. To obtain the triangulation, a T1-weighted MR image from a single human subject was segmented in grey and white matter compartments and the cortical surface represented as a triangular net using the CURRY software package (Compumedics Neuroscan, Ltd). The T1 image was co-registered to a standard MRI atlas (MNI305, [37] ) using a 12-parameter affine transform with sinc interpolation as implemented in SPM99 (see http://www.fil.ion.ucl.ac.uk/spm/ and [38] ). The transform matrix from the co-registration was then applied to the triangulated cortical surface to the MRI atlas.
The stability diagram for the network in Equation (1) is obtained by linear stability analysis leading to the characteristic equation where ū is the fixed point solution. The eigenvalue λ has 2N non-trivial roots with The equilibrium state is stable if all eigenvalues λ have negative real parts, Re(λ)<0, which were found numerically. The stability diagrams in Figure 3 were constructed using this procedure. We also cross-validated the presence of negative real parts of the eigenvalues by direct numerical simulations of Equation 1.
We obtain activity at different areas by simulating Equation 1 for parameter values indicated in the stability diagram. The parameters are chosen to lie on or just below the critical boundary of stable and unstable regions. Network data are simulated for numerical values of parameters in the stable region. Once the network dynamics settles into its equilibrium state (see Figure S1), the coupling parameter c is increased just beyond the critical boundary. We use the smallest increase of c possible given the discretization of the parameter space. As a consequence, now in the unstable regime, the network dynamics increases towards high-amplitude oscillations. A typical time series plot is shown in Figure S1. Using a sliding temporal window of 500 ms width, we perform a Principal Component Analysis (PCA) during the transient as the oscillations increase. The local Center Manifold Theorem guarantees that the network modes with the largest positive real part of the eigenvalue grow fastest and hence dominate the transient initially. Hence, the eigenvectors of PCA span a linear vector space, in which the dominant network modes will be represented. In other words, the networks implicated in rest state activity will be a linear superposition of the PCA eigenvectors. Then the spatiotemporal data can be decomposed as: where the kth PCA eigenvector ψk spans a spatial network. During all transients observed in our simulations, the first two PCA eigenvectors contribute together at least 99.995 percent (see Figure 4B). Hence it does suffice to represent the entire transient dynamics by the first two PCA eigenvectors. Since, in a given PCA eigenvector ψk, each node is multiplied by the same time-dependent coefficient ξk(t), the magnitude of the ith vector element will scale the resulting contribution of the ith node to the network dynamics. The most dominant nodes of these two networks ψk(i) are then identified through an ordering process: we compute ψk(i)2 for all nodes i and both network modes k = 1, 2 and order these according to power (see for instance Figure 4C). There is no hard criterion to identify a threshold for the inclusion of nodes in a network. For reasons of clarity, we choose to show the first three dominating nodes for each eigenvector in Figure 4A, which corresponds to at least 90% of the power per eigenvector in all cases.
To relate the simulated neural activity to recent fMRI studies, we have generated BOLD signal for each regions by using a hemodynamic model. This model combines the Balloon/Windkessel model comprised in venous volume and deoxyhemoglobin content with a linear dynamical model of how synaptic activity causes changes in regional cerebral blood flow [31] (link). For each region, neural activity causes an increase in a vasodilatory signal inducing blood flow, which changes blood volume and deoxyhemoglobin content. The BOLD signal is given by a volume-weighted sum of extra- and intra vascular signals as the function of volume and deoxyhemoglobin content. The local neural activity, which is taken to be the absolute value of the time derivative of the output occurring by our network model in each brain region, is used as the main model input to estimate a BOLD signal. For the analyses, the global mean signal (average over all regions) has been regressed out from the single BOLD time series. All parameters regarding blood flow, deoxyhemoglobin content, and vessel volume in the model equation are taken from [31] (link).
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Publication 2008
To conduct the signal separation using Eqs. (3) and (4), the coefficients of both hemodynamic modalities, and , have to be known. In the following section, we propose a procedure to determine them.
The functional component originates mainly from the regional cerebral hemodynamics evoked by neural activation. We surveyed fNIRS studies from the past and utilized studies satisfying two conditions: (1) those that used an appropriate experimental design to exclude physiological signals other than cerebral hemodynamics and (2) those that provided a graph of both oxy- and deoxyhemoglobin changes from the beginning to the end of functional activation. We calculated the value of from the graph. A vertically flipped copy of the graph was superposed on the original graph using a drawing software (Illustrator, Adobe Systems), and the original's vertical magnification was manually modulated such that the oxyhemoglobin changes in the original graph visually coincided with the deoxyhemoglobin changes in the copy. The magnification percentage gave . In most cases, the shape of the flipped deoxyhemoglobin graphs was quite similar to that of the original oxyhemoglobin graphs. This indicated that the negative linear correlation between oxy- and deoxyhemoglobin generally held true for the hemodynamics associated with neural activation. The result is shown in Table 1. All values given by the studies fell in a range of . In Table 1, the mean SD of was −0.56 0.12. From the statistical analysis using ANOVA, the values in Table 1 showed a statistical difference between groups with visual and other kinds of stimulation ( for visual and for other kinds of stimulation; ). There was no statistical difference in between different subjects and durations. From these analyses, we adopted as the universal value.
The coefficient of the systemic component has the relationship with . It is known that oxygen saturation levels differ among vessels. For example, under normal conditions, the saturation level in arteries is greater than 95%, while that in veins is approximately 70% [46] (link), and it decreases to approximately 50% after intense physical activity. These saturation levels correspond to of less than 0.053, 0.43, and 1.0, respectively.
The coefficient may vary according to the type of task. If a task containing a psychophysiological load is executed, it may change the arterial blood pressure, respiration rate, and vasomotor action. These changes cause blood volume changes mainly in the arteries and arterioles. Since blood in the arteries and arterioles has a high oxygen saturation level, should be small. In contrast, hyperemia induced by a posture change gives a larger value because a passive volume capacity change can occur not only in arteries but also in veins having lower oxygen saturation levels. Furthermore, different values are expected if the intensity of physical activity is varied. Thus, unlike , we cannot expect a universal value of under various task conditions.
In our model, we assume that capillaries mainly generate the functional component and arteries and veins generate the systemic component. Since these components originate from different vessels and different hemodynamic modalities, we assumed a high statistical independence between them. Thus, we determined by minimizing the mutual information between these components. The mutual information is given as follows. where and represent the probability density functions of and , respectively, and represents a joint probability density function of and . These probabilities are estimated by the normalized histograms of and , and the normalized joint histograms of and . Histograms are calculated from Eqs. (3) and (4) when and are given. Here we fix based on the discussion on Table 1. Thus, if we set , the mutual information can be calculated by Eq. (5). By enumerating in we determine , which minimizes the mutual information.
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Publication 2012
ARID1A protein, human Arteries Arterioles BLOOD Blood Vessel Blood Volume Capillaries deoxyhemoglobin Hemodynamics Hyperemia Joints Nervousness neuro-oncological ventral antigen 2, human Oxygen Saturation Oxyhemoglobin physiology Respiratory Rate Veins

Most recents protocols related to «Deoxyhemoglobin»

ROIs extraction from breast tissues is key to differentiating malignant from benign lesions. ROIs are the areas where tumors that grow with angiogenesis support have higher metabolic rates and produce more deoxyhemoglobin than normal tissues. Since deoxyhemoglobin is sensitive to light at 640 nm, it generally appears as a dark blue light-absorbing region in the image [34 (link)]. Therefore, we consider dark blue areas in a series of sequential DOBI data as ROIs or SAs and design an algorithm to extract these ROIs. Detailed ROIs extraction processes are provided in the Supplement 1.
Publication 2024
A 48-channel fNIRS MR-compatible device (OxyMon fNIRS, Artinis) was utilized in the present study for recording the variations in the concentration of oxy- and deoxyhemoglobin. The device is located in the National Brain Mapping Laboratory (NBML) and could transmit infrared (IR) radiation at 730 and 850 nm, and 10-Hz sampling frequency, which can penetrate the skull and assess the brain cortex. Additionally, the changes in the concentration of blood oxy- and deoxyhemoglobin were calculated based on Beer-Lambert's law (Delpy et al., 1988 (link); Obrig et al., 2000 (link); Toronov et al., 2000 (link); Boas et al., 2001 (link)). The results of the previous studies indicated that neuronal activity leads to consecutive changes in the concentrations of oxy- and deoxyhemoglobin. fNIRS signals were recorded from 24 channels involving 10 transmitters and 10 detectors located in the three different regions of the brain frontal cortex including ventrolateral (VLPFC), dorsolateral (DLPFC), and medial prefrontal cortex (MPFC). A 3-cm constant distance was considered between each transmitter and detector, which can evaluate the penetration depth of 1.5 cm. The arrangement of channels and their associated areas are provided in Figure 2.
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Publication 2024
The fNIRS signals were recorded during the formal experiment using a portable fNIRS device (OctaMon+, Artinis Medical Systems, the Netherlands) with a sampling rate of 10 Hz, which has been widely employed in previous studies.29 (link)31 (link, link) This portable fNIRS device contains eight channels, including eight light-emitting diodes and two receivers operating at wavelengths of 760 and 850 nm. Based on the modified Beer–Lambert Law,32 (link) the fNIRS device converts the light intensity signal into the oxyhemoglobin and deoxyhemoglobin concentration. Oxyhemoglobin is a more commonly used biomarker of cerebral activity due to its larger amplitudes compared with deoxyhemoglobin.33 (link)35 (link, link) Note that, in this study, we focused on analyzing the oxyhemoglobin concentration as the biomarker, and unless otherwise specified, all results presented in this paper are derived from the oxyhemoglobin concentration signals.
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Publication 2024
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Neuronal activity gives rise to the blood-oxygen-level-dependent signal detected in fMRI through a hemodynamic process that is well-described by the Balloon-Windkessel model [19] (link), comprised of four dynamical variables: vasodilatory signal s(t), blood inflow f(t), blood volume v(t) and deoxyhemoglobin content q(t). The system of differential equations is:
where z(t) is the neuronal activity, given by the sum of the neuronal firing rates calculated through Eq. ( 5), and κ, γ, τ B , α and ρ are parameters describing the rate of signal decay, rate of flow-dependent elimination, hemodynamic transit time, Grubb's exponent of blood outflow and resting oxygen extraction fraction, respectively. The BOLD signal, B(t), is then a volume-weighted sum of intra-and extravascular contributions to blood volume and deoxyhemoglobin content:
with 𝑉 0 the resting blood volume fraction.
Publication 2024
Figures 8(a)8(d) show the evaluation results of the smartwatch-based prototype according to different types of oral challenges for the same male subject who has no underlying health conditions. Here, the vertical dashed line in each plot indicates the time when the oral challenge was given to the subject, and the 10% vertical error bar range was applied to the reference CGM values considering the typical accuracy of the sensor.34 (link)
In Fig. 8(a), the metabolic index MI agreed well with the reference glucose concentration transition induced by the sugary drink ingestion. On the other hand, in Figs. 8(c) and 8(d), both MI and reference values were maintained nearly flat during each oral challenge test. Obviously, the sugar-free drink does not affect the subject’s BGL that much. However, the finding that MI values did not change as much during the sugar-free oral challenge tests suggests that MI is not simply a reflection of the body’s hydration status. At the same time, judging from the results that both carbonated and non-carbonated sugar-free drinks showed similar flat MI trends, the result in Fig. 8(a) is unlikely to be due to the carbonation status of the oral challenge. Regarding Fig. 8(b), an offset of about 15 min that can be seen between MI and CGM is likely due to the lag between blood glucose and interstitial fluid (ISF) glucose. In general, 15 min of CGM sensor delay is a bit large compared to the typical delay reported by the manufacturer. However, a previous study35 (link) shows that CGM delay can reach 15 min. Then, by compensating for 15 min of offset in Fig. 8(b), the plot can be modified as in Fig. 9(a). In this case, the MI also follows the up and down trend of the CGM well, in the same way as seen in Fig. 8(a). The proposed MI method response time can be estimated as 5 to 15 min from Figs. 8(a)8(d) considering that the CGM device time delay is 5 to 15 min and the MI exhibited a similar trend.
By compiling the plot data from Figs. 8(a), 8(c), 8(d), and 9(a), a scatter plot Fig. 9(b) can be obtained. Here, each numerical data of MI corresponding to each CGM data point has been calculated by interpolation. In Fig. 9(b), the correlation coefficient r calculated by the linear least squares (LLS) fitting reached 0.78, which indicates that the proposed metabolic index MI has a strong correlation with BGL.
In addition, the arterial oxygen saturation SaO2(t) remained between 90±2% during a series of experiments, which means that SaO2(t)·[1SaO2(t)] remained between 0.07 and 0.11 in Eq. (32), and the maximum to minimum ratio of SaO2(t)·[1SaO2(t)] was at most 1.4 . Here, the decrease in SaO2(t) from its normal range is attributed to the measurement section where SaO2(t) approaches StO2(t) .36 (link)
Therefore, the increase in the metabolic index MI was largely due to the change in Δθ(t) : the phase delay between oxy- and deoxyhemoglobin. For reference, the Δθ(t) transition in the experiment of Fig. 8(a) is shown in Fig. 9(c). In this study, the results consistently showed that Δθ(t) was positive during each oral challenge test, indicating that the oxyhemoglobin NIRS signal NHbO2(t) consistently precedes the deoxyhemoglobin NIRS signal NHb(t) . The MI trend is therefore almost identical to the non-absolute Δθ(t) trend. For this reason, only the MI trends are plotted in this paper to evaluate the proposed method, rather than separately plotting Δθ(t) and SaO2(t) .
Thus, the validity of the assumptions in Eq. (24) is verified.
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Publication 2024

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More about "Deoxyhemoglobin"

Deoxyhemoglobin, also known as deoxyHb or Hb(Fe2+), is the form of hemoglobin that lacks bound oxygen.
It is the primary oxygen carrier in the blood, transporting oxygen from the lungs to the body's tissues.
Deoxyhemoglobin is crucial for cellular respiration and energy production, making it essential for maintaining proper oxygenation, circulation, and metabolic processes.
Researching the dynamics and regulation of deoxyhemoglobin can provide valuable insights into various cardiovascular, respiratory, and hematological conditions.
For example, understanding deoxyhemoglobin levels and distribution can help in the diagnosis and treatment of conditions like anemia, hypoxia, and certain cardiovascular diseases.
Advanced optical imaging techniques, such as NIRO-200, LABNIRS, ETG-4000, ETG-4100, ETG-7100, and FOIRE-3000, can be used to non-invasively monitor deoxyhemoglobin levels and distribution in the body.
These technologies, along with MATLAB and Fastrak/Fastrack, can provide valuable data and insights for researchers studying deoxyhemoglobin and its role in various physiological processes.
Furthermore, the use of medical adhesives like Tegaderm can enhance the comfort and adherence of optical sensors during long-term monitoring of deoxyhemoglobin levels, improving the quality and reliability of research data.
By incorporating these technologies and techniques, researchers can gain a deeper understanding of deoxyhemoglobin and its implications for human health, potentially leading to advancements in the diagnosis and treatment of a wide range of medical conditions.