Competent Escherichia coli cells (Electromax DH10B from Invitrogen) [F−-mcrAΔ(mrr-hsdRMS-mcrBC) ф80dlacZ ΔM15 ΔlacX74 recA1 endA1 araD139 Δ(ara, leu)7697 galU galKλ- rpsL nupG] served as the host strain for cloning experiments and plasmid propagation. E. coli cells transformed with plasmids were grown at 37°C in Luria-Bertani (LB) broth medium or in LB agar supplemented with 100 μg/ml of ampicillin.
Saccharomyces cerevisiae strain W303a (MATa his3-11, 15 trp11 leu2-3,112 ura3-1 ade2-1 can1-100) VL6-48N (MATα trp1-Δ1 ura3-Δ1 ade2-101 his3-Δ200 lys2 met14 cir) (22 (link)) was cultured at 30°C in YPDA medium (Clontech) according to a standard protocol (23 ). Yeast transformed with mycoplasma genomes was grown in minimal SD Base medium (Clontech), complemented with—HIS DO supplement (Clontech) (SD-HIS medium).
Wild-type Mcap (wtMcap) strain California KidT (ATCC 27343) was used in this study as well as a restriction-free Mcap mutant (McapΔRE) obtained by inactivation of the CCATC-restriction enzyme in the wild-type strain (8 (link)). McapΔRE harbors (i) a puromycin resistance marker for selection in mycoplasma background and (ii) yeast elements (a centromere CEN6, an autonomously replicating sequence ARSH4 and the auxotrophic marker HIS) for selection and propagation of the Mcap genome as a centromeric plasmid in yeast. Wild-type Mycoplasma leachii strain PG50 (wtMlea) (24 (link),25 (link)), wild-type Mmc strain GM12 (wtMmc) (24 (link)), wild-type Mycoplasma mycoides subsp. mycoides strain PG1 (wtMmm) (26 (link)), wild-type Mycoplasma putrefaciens strain 156 (wtMputr), wild-type Mesoplasma florum strain L1 (wtMflorum; ATCC 33453) (27 ) and wild-type Spiroplasma citri strain GII3 (wtScitri; ATCC 27556) (28 ) were transformed with the newly constructed vector pMT85tetM-PSlacZ-pRS313 (Supplementary Figure S1) as described by others (9 (link),29 (link)), then selected as donor species for GT experiments.
All species were cultured in SP5 medium, deriving from the original SP4 medium (30 (link)). SP5 medium is composed of 3.5 g/l of Mycoplasma broth base (Fisher Scientific), 10 g/l of Bacto Tryptone (Fisher Scientific) and 5.3 g/l of Bacto Peptone (Fisher Scientific). The solution was adjusted to pH 7.5, autoclaved for 20 min at 120°C, then supplemented with 0.125% (w/v) glucose, 5% (v/v) CMRL 1066 10× (Invitrogen), 0.11% (w/v) sodium bicarbonate, 1 mM L-glutamine, 3.5% (v/v) yeast extract (Fisher Scientific), 0.2% (w/v) TC yeastolate, 17% (v/v) fetal bovine serum, 0.1 mg/ml ampicillin and 0.002% (w/v) phenol red.
Mycoplasma strains were all cultured at 37°C, whereas Mflorum and Scitri were cultured at 30 and 32°C, respectively. Tetracycline was added to the medium when needed at concentrations ranging from 2 to 15 μg/ml, depending on the species.
For transplantation experiments, McapΔRE recipient cells were grown at 30°C in super optimal broth (SOB) (31 (link)) supplemented with 17% (v/v) fetal bovine serum, glucose at 10 g/l, 0.002% (w/v) phenol red, and penicillin at 0.5 μg/ml (SOB (+) medium).
Saccharomyces cerevisiae strain W303a (MATa his3-11, 15 trp11 leu2-3,112 ura3-1 ade2-1 can1-100) VL6-48N (MATα trp1-Δ1 ura3-Δ1 ade2-101 his3-Δ200 lys2 met14 cir) (22 (link)) was cultured at 30°C in YPDA medium (Clontech) according to a standard protocol (23 ). Yeast transformed with mycoplasma genomes was grown in minimal SD Base medium (Clontech), complemented with—HIS DO supplement (Clontech) (SD-HIS medium).
Wild-type Mcap (wtMcap) strain California KidT (ATCC 27343) was used in this study as well as a restriction-free Mcap mutant (McapΔRE) obtained by inactivation of the CCATC-restriction enzyme in the wild-type strain (8 (link)). McapΔRE harbors (i) a puromycin resistance marker for selection in mycoplasma background and (ii) yeast elements (a centromere CEN6, an autonomously replicating sequence ARSH4 and the auxotrophic marker HIS) for selection and propagation of the Mcap genome as a centromeric plasmid in yeast. Wild-type Mycoplasma leachii strain PG50 (wtMlea) (24 (link),25 (link)), wild-type Mmc strain GM12 (wtMmc) (24 (link)), wild-type Mycoplasma mycoides subsp. mycoides strain PG1 (wtMmm) (26 (link)), wild-type Mycoplasma putrefaciens strain 156 (wtMputr), wild-type Mesoplasma florum strain L1 (wtMflorum; ATCC 33453) (27 ) and wild-type Spiroplasma citri strain GII3 (wtScitri; ATCC 27556) (28 ) were transformed with the newly constructed vector pMT85tetM-PSlacZ-pRS313 (Supplementary Figure S1) as described by others (9 (link),29 (link)), then selected as donor species for GT experiments.
All species were cultured in SP5 medium, deriving from the original SP4 medium (30 (link)). SP5 medium is composed of 3.5 g/l of Mycoplasma broth base (Fisher Scientific), 10 g/l of Bacto Tryptone (Fisher Scientific) and 5.3 g/l of Bacto Peptone (Fisher Scientific). The solution was adjusted to pH 7.5, autoclaved for 20 min at 120°C, then supplemented with 0.125% (w/v) glucose, 5% (v/v) CMRL 1066 10× (Invitrogen), 0.11% (w/v) sodium bicarbonate, 1 mM L-glutamine, 3.5% (v/v) yeast extract (Fisher Scientific), 0.2% (w/v) TC yeastolate, 17% (v/v) fetal bovine serum, 0.1 mg/ml ampicillin and 0.002% (w/v) phenol red.
Mycoplasma strains were all cultured at 37°C, whereas Mflorum and Scitri were cultured at 30 and 32°C, respectively. Tetracycline was added to the medium when needed at concentrations ranging from 2 to 15 μg/ml, depending on the species.
For transplantation experiments, McapΔRE recipient cells were grown at 30°C in super optimal broth (SOB) (31 (link)) supplemented with 17% (v/v) fetal bovine serum, glucose at 10 g/l, 0.002% (w/v) phenol red, and penicillin at 0.5 μg/ml (SOB (+) medium).