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Oxidants

Oxidants are highly reactive chemical species that can induce oxidative stress and damage various cellular components.
These include reactive oxygen species (ROS) such as superoxide anions, hydrogen peroxide, and hydroxyl radicals, as well as reactive nitrogen species (RNS) like nitric oxide and peroxynitrite.
Oxidants play crucial roles in physiological processes like signaling and defense against pathogens, but excessive levels can lead to oxidative stress and contribute to the pathogenesis of numerous diseases, inclluding cancer, cardiovascular disorders, and neurodegenerative conditions.
Understanding the complex interplay between oxidants and biological systems is essential for developing effective therapeutic strategies.
Researchers can leverage the AI-driven platform PubCompare.ai to optimize their oxidant research by easily identifying the best protocols from literature, preprints, and patents, enhancing reproducibility and accuracy.

Most cited protocols related to «Oxidants»

All protocols were approved by the Institutional Animal Care and Use Committee. Ten-week-old C57Bl6 mice that consumed standard (CON) or HF chow for 10 to 12 weeks were used for experiments on metabolic characterization, insulin-mediated signal transduction in the vasculature, blood pressure, vascular function, detection of vascular oxidant load, and mRNA expression. Similar experiments were completed in TTr-IR−/−13 (link),19 (link),20 (link) mice, Akt1−/−14 (link) mice, and their WT littermates. Detailed procedures are provided in the expanded Materials and Methods section in the online data supplement at http://circres.ahajournals.org.
Publication 2009
AKT1 protein, human Blood Physiological Phenomena Blood Pressure Blood Vessel Dietary Supplements Institutional Animal Care and Use Committees Insulin Mus Oxidants RNA, Messenger Signal Transduction
Typically, flake graphite (10 g), KMnO4 (6 g) and K2FeO4 (4 g) as the oxidants, and boric acid (0.01 g) as a stabilizer were first dispersed in 100 mL of concentrated sulfuric acid in a vessel and stirred for 1.5 h at less than 5 °C. After the addition of another KMnO4 (5 g), the vessel was transferred into a water bath at about 35 °C and stirred for another 3 h to complete the deep oxidation. Next, as 250 mL of deionized water was slowly added, the temperature was adjusted to 95 °C and held for 15 minutes, when the diluted suspension turned brown, indicating the hydrolysis and absolute exfoliation of intercalated graphite oxide. Finally, this brown suspension was further treated with 12 mL H2O2 (30%) to reduce the residual oxidants and intermediates to soluble sulfate, then centrifuged at 10000 rpm for 20 min to remove the residual graphite, and washed with 1 mol/L HCl and deionized water repeatedly, producing the terminal GO (designated GO2). For comparison, another GO (designated GO1) was synthesized following Kovtyukhova improved Hummers method20 , except two of little modification: (1) the ingredients were adjusted slightly, as shown in Table S1; (2) both preoxidation and oxidation time was set at 4 hours.
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Publication 2016
ARID1A protein, human Bath Blood Vessel boric acid Graphite Hydrolysis Oxidants Oxides Peroxide, Hydrogen potassium ferrate Sulfates, Inorganic sulfuric acid Tooth Exfoliation
The strains and plasmids used in this study are listed in Additional file 4: Table S3. E. coli strains were grown in Luria–Bertani medium at 37°C with shaking (180 rpm) or on solid growth medium, which contained 1.6% (w/v) agar. R. sphaeroides strains were cultivated at 32°C in 50-ml Erlenmeyer flasks containing 40 ml malate minimal medium (Additional file 4: Table S4) with continuous shaking at 140 rpm, resulting in a constant dissolved oxygen concentration of approximately 25–30 μM during the exponential phase. These growth conditions are designated as oxic growth. To achieve anoxic conditions, we used completely filled screw-cap Meplat bottles for liquid cultures, which were sealed with Parafilm and cultivated in the dark. The remaining oxygen was used up by the cultures within 60 seconds, as confirmed using an oxygen sensor. To allow anaerobic respiration, dimethyl sulphoxide (DMSO) was added as electron acceptor at a final concentration of 60 mM. Anoxic incubation over several days resulted in a final OD660 of approximately 0.5. Conditions of iron limitation were achieved by transferring R. sphaeroides into iron-limited malate minimal medium containing the iron chelator 2,2′-dipyridyl (30 μM; Merck KGaA) three times. Inductively coupled plasma mass spectrometry (ICP-MS) using an Agilent 7500ce spectrometer confirmed that the iron content was drastically reduced in iron-limited medium (from 140 mg l-1 to 16 mg l-1) [22 (link)]. When required, antibiotics were added to liquid or solid growth media at the following concentrations: spectinomycin (10 μg ml-1); kanamycin (25 μg ml-1); tetracycline (2 μg ml-1) (for R. sphaeroides); kanamycin (25 μg ml-1); and tetracycline (20 μg ml-1) (for E. coli).
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Publication 2014
Agar Anoxia Antibiotics, Antitubercular Chelating Agents Culture Media Escherichia coli Growth Disorders Iron Iron Metabolism Disorders Kanamycin malate Mass Spectrometry Neoplasm Metastasis Oxidants Oxygen Oxygen-25 Plasma Plasmids Respiration Spectinomycin Strains Sulfoxide, Dimethyl Tetracycline
Oxidative modifications products were assessed both in the plasma and tissue homogenates.
Advanced Oxidation Protein Products (AOPP) were estimated colorimetrically using a method Kalousová et al. (2002 (link)), which measures the total iodide ion oxidizing capacity of the samples. Absorbance at 340 nm was measured immediately by Infinite M200 PRO Multimode Microplate Reader, Tecan.
Advanced glycation end products (AGE) were estimated spectrofluorimetrically at the excitation and emission wavelengths of 350 and 440 nm using Infinite M200 PRO Multimode Microplate Reader, Tecan. Results were expressed as fluorescence/mg of the total protein.
The content of dityrosine, kynurenine, N-formylkynurenine and tryptophan was analyzed spectrofluorimetrically on 96-well microplates measuring the characteristic fluorescence at 330/415, 365/480, 325/434, and 95/340 nm respectively by Infinite M200 PRO Multimode Microplate Reader, Tecan. Results were expressed as fluorescence/mg of the total protein.
Lipid peroxidation was estimated colorimetrically using the Thiobarbituric Acid Reactive Substances (TBARS) method for measuring a malondialdehyde (MDA). 1,3,3,3 tetraethoxypropane was used as a standard (Buege and Aust, 1978 (link)).
The concentration of 4-hydroxynonenal (4-HNE) protein adducts was measured by commercial enzyme-linked immunosorbent assay (ELISA) according to the manufacturer's instructions (OxiSelect™ HNE Adduct Competitive ELISA Kit, Cell Biolabs, Inc. San Diego, CA, USA). The quantity of 4-HNE protein adducts was determined colorimetrically from a calibration curve for 4-HNE-BSA.
Total oxidant status (TOS) was measured colorimetrically based on the oxidation of ferrous ion (Fe2+) to ferric ion (Fe3+) in the presence of oxidants comprised in a sample (Erel, 2005 (link)). Changes in absorbance of the reaction solution were measured bichromatically (560/800 nm) in triplicate samples. The results were expressed as micromolar hydrogen peroxide (H2O2) equivalent per mg of the total protein (μmol H2O2 Equiv/mg of the total protein).
Oxidative stress index (OSI) was calculated according to the formula: OSI = TOS/TAC·100% (Knaś et al., 2016 (link)).
The total protein content was determined colorimetrically using the bicinchoninic acid assay (BCA assay) with bovine serum albumin (BSA) as a standard (Thermo Scientific PIERCE BCA Protein Assay Kit, Rockford, IL, USA).
All assays were performed in duplicate samples, except for the TOS determination (see above) and converted to mg of the total protein. Graphical representation of the experiment was presented on Figure 1.
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Publication 2017
Advanced Oxidation Protein Products bicinchoninic acid Biological Assay Cells dityrosine Enzyme-Linked Immunosorbent Assay Fluorescence Glycation End Products, Advanced Iodides Kynurenine Lipid Peroxidation M-200 Malondialdehyde N'-formylkynurenine Oxidants Oxidative Stress Peroxide, Hydrogen Plasma Proteins Serum Albumin, Bovine Thiobarbituric Acid Reactive Substances Tissues Tryptophan
Tests for susceptibility to oxidants were performed either in PBS (S. aureus) or THB (S. pyogenes). Hydrogen peroxide (H2O2) was added to 1.5% final concentration, 2 × 09 bacteria were incubated at 37°C for 1 h, and then 1,000 U/ml of catalase (Sigma-Aldrich) was added to quench residual H2O2. Dilutions were plated on Todd-Hewitt agar (THA) for enumeration of surviving CFU. For the singlet oxygen assay, 108 S. aureus or 4 × 108 S. pyogenes were incubated at 37°C in individual wells of a 24-well culture plate in the presence or absence of 1–6 μg/ml methylene blue and situated exactly 10 cm from a 100-W light source. Bacterial viability was assessed after 1–3 h by plating dilutions on THA. Control plates handled identically but wrapped in foil or exposed to light in the absence of methylene blue did not show evidence of bacterial killing.
Publication 2005
Agar Bacteria Bacterial Viability Biological Assay Catalase Light Methylene Blue Oxidants Peroxide, Hydrogen Singlet Oxygen Staphylococcus aureus Streptococcus pyogenes Susceptibility, Disease Technique, Dilution

Most recents protocols related to «Oxidants»

EXAMPLE 5

The antioxidant potential of Extracts 1-3 and 6-9 was analyzed using a kit by Oxford Biomedical Research, P.O. Box 522, Oxford MI 48371. This colorimetric microplate assay allows comparison of each Extract 1-3 and 6-9 to a standard to determine the total copper reducing equivalents. Generally the assay was performed by preparing the standards, and allowing dilution buffer, copper solution and stop solution to equilibrate to room temperature for about 30 minutes prior to running the assay. Both Extracts 1-3 and 6-9 samples and standards were diluted 1:40 in the provided dilution buffer (e.g. 15 mL serum+585 mL buffer). Next, 200 mL of diluted Extract samples or standards were placed in each well. The plate was read at 490 nanometers (nm) for a reference measurement. Then 50 mL of Cu++ solution was added to each well and incubated about 3 minutes at room temperature. 50 mL of stop solution was added and the plate read a second time at 490 nm.

The data in Table 15 demonstrates the antioxidant potential of each of Extracts 1-3 and 6-9 at two different concentrations. The data further explains the effectiveness of extracts against damaging oxidant or ROS events (above discussed) generated during in vitro processing of reproductive cells.

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Patent 2024
Antioxidants Biological Assay Buffers Cells Colorimetry Copper Genitalia Germ Cells Oxidants Serum Technique, Dilution
Not available on PMC !

Example 2

In a reaction bottle, p-cyanoaniline (59 mg, 0.5 mmol), catalyst (28 mg, 0.05 mmol), di-tert-butyl peroxide (138 μL, 0.75 mmol), and toluene (7 mL) were added sequentially. The reaction was carried out at 120° C. for 24 hours. After the reaction was complete, the reaction mixture was cooled to room temperature. The product was purified by column chromatography eluting with ethyl acetate/petroleum ether with a volume ratio of 1:50, a yield of 88%.

When iron bromide (10 mol %) was used as the catalyst, the yield was only 8%. When tert-butyl hydroperoxide (1.5 times) was used as the oxidizing agent, the yield was only 22%.

The product was dissolved in CDCl3 (ca. 0.4 mL), sealed, and characterized on a Unity Inova-400 NMR apparatus at room temperature: 1H NMR (400 MHz, CDCl3, TMS): 7.38-7.28 (m, 7H), 6.58-6.55 (m, 2H), 4.73 (s, 1H), 4.35 (s, 2H) ppm.

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Patent 2024
1H NMR Bromides Chromatography di-tert-butyl peroxide ethyl acetate Iron naphtha Oxidants tert-Butylhydroperoxide Toluene

Example 3

Optimum dosage of reagent may increase the efficiency of leaching. First, at certain concentrations, the reagent may form an insoluble complex with the metal ion of interest and precipitate. For example, Tu can form an insoluble complex with Cu(I) ions at a 3:1 molar ratio. A precipitation test was performed to examine the concentration range at which Cu-Tu complex precipitation may occur. 20 mL of Cu solution was divided into several identical portions followed by the addition of various Tu dosage (i.e. 0 to 60 mM). The solution was stirred for 24 hours, and the Cu remaining in the solution phase was analyzed by AAS. The results are shown in FIG. 17, plotted as the percentage of Cu remaining.

Second, heap leaching of metal sulfides is based on a bioleaching mechanism, an excessive amount of reagent may be detrimental to bioleaching microbes. For example, bacteria commonly used for bioleaching, such as Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans, have very slow growth in a solution containing 10 mM Tu, and cannot survive at 100 mM Tu.

Third, with respect to Tu specifically, ferric reacts with Tu and converts it to FDS (see Hydrometallurgy 28, 381-397 (1992)). Although the reaction is reversible under certain conditions, a high concentration of FDS tends to decompose irreversibly into cyanamide and elemental sulfur (see J Chromatogr 368, 444-449).
2Tu+2Fe3+↔FDS+2Fe2++2H+FDS→Tu+cyanimide+S

Therefore, over-addition of Tu in the lixiviant may cause the loss of Fe3+ and Tu due to oxidation and decomposition. The irreversible decomposition of FDS has been observed when adding 4 mM of Tu into a 40 mM ferric sulfate solution at pH 1.8.

To further investigate the effect of Tu dosage on copper extraction, stirred reactor tests were performed using 1 g of synthetic chalcopyrite in 1.9 L of 40 mM ferric sulfate solution at pH 1.8 with various initial Tu concentrations. The treatments were run for 172 hours to approach maximum extraction. The results are presented in FIG. 18, and shows that, for 1 g of chalcopyrite, higher Tu dosage results in faster leaching kinetics among the Tu concentrations tested.

For Tu dosages of 5 mM and under, the initial 40 mM ferric sulfate solution can be considered as a sufficient supply of oxidant. However, for higher dosages such as 10 mM and 20 mM of Tu, extra ferric (in 1:1 ratio with Tu) had to be added to the solution to allow the oxidation of Tu to FDS. For 10 mM Tu, an extra 10 mM of Fe3+ was added at time zero. For 20 mM Tu, an extra 20 mM of Fe3+ was added at 72 hours, which led to the continuation of extraction as shown in FIG. 18.

The Tu dosage vs. Cu extraction at 172 hours is plotted in FIG. 19. An initial Tu dosage up to 5 mM appears to have the most pronounced effect on the dissolution of Cu.

As indicated above, in previous shakeflask tests with acidic solutions (pH 1.8) containing various concentrations of Fe3+ and Cu2+ ions, slight precipitation occurred upon the addition of 4 mM of Tu due to the decomposition of FDS. Accordingly, concentrations of Tu concentration below 4 mM may avoid such precipitation. A series of shakeflask tests were performed on solutions containing initial concentrations of 2 mM Tu and various concentrations in a matrix containing Fe3+ (0-100 mM) and Cu2+ (0-50 mM) in order to identify concentration ranges of [Fe3+] and [Cu2+] that do not result in Cu complex precipitation. The results showed that no precipitation and no loss of Cu from the solution phase resulted using 2 mM of Tu in this wide range of Fe and Cu matrix concentrations.

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Patent 2024
Acidithiobacillus ferrooxidans Acidithiobacillus thiooxidans Acids Bacteria chalcopyrite Coordination Complexes Copper Cyanamide ferric sulfate Ions Kinetics Metals Molar Oxidants Sulfides Sulfur TU-100
Not available on PMC !

Example 4

At 4 weeks after PNx surgery, a significant activation of c-Src (FIG. 5D, p<0.01 vs Sham) and ERK1/2 (FIG. 5E, p<0.01 vs Sham) was observed in LV homogenates in PNx group that was attenuated in those PNx animals given CoPP or pNaKtide (both p<0.01 vs PNx). Comparing to sham group, PNx stimulated protein carbonylation, an oxidative stress marker, in LV homogenates (FIGS. 6A-6B, p<0.01 vs Sham). Administration of CoPP and pNaKtide reduced PNx-induced protein carbonylation (FIGS. 6A-6B, both p<0.01 vs PNx). TBARS data were consistent with the carbonylation data as expected (FIG. 7).

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Patent 2024
Animals COPP protocol Heart Mitogen-Activated Protein Kinase 3 Operative Surgical Procedures Oxidants Oxidative Stress pNaKtide Protein Carbonylation Thiobarbituric Acid Reactive Substances

Example 2

Tests were conducted to check the antioxidant/antibacterial activity of macrocycle and host-guest compounds. 5 uL of 0.01M compound, 5 uL (premixed, 0.01M compound+1M Pyrogallol, 1:1) and 5 uL (premixed, 0.01M compound+0.88M H2O2, 1:1) were added on paper discs placed on plates. 5 uL of 1M pyrogallol, 5 uL of 0.88M H2O2 were used as control (oxidants).

TABLE 1
Stock Solution
SampleWeightVolumeStock
CodeCompound(mg)(mL)solutionSolvent
R1RsC15.4410.01MDMSO
DPFD9.2650.01MDMSO
RDRsC1-PFD7.8810.01MDMSO
(1:1) Cocrystal
R4RsC47.1210.01MDMSO
P6PgC69.0310.01MDMSO
PRP2R2C47.4410.01MDMSO
VKVK-28110.01MDMSO
PyPyrogallol6.305   1MWater

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Patent 2024
Anti-Bacterial Agents Antioxidant Activity Calixarenes Oxidants Peroxide, Hydrogen pirfenidone Pyrogallol resorcinol Solvents Sulfoxide, Dimethyl

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DCFH-DA is a fluorogenic probe used for the detection of reactive oxygen species (ROS) in biological systems. It is a cell-permeable compound that undergoes oxidation in the presence of ROS, resulting in the formation of the highly fluorescent compound 2',7'-dichlorofluorescein (DCF). The intensity of the fluorescence signal is proportional to the level of ROS present in the sample, making DCFH-DA a useful tool for studying oxidative stress and cellular redox status.
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CM-H2DCFDA is a fluorogenic dye that measures hydroxyl, peroxyl, and other reactive oxygen species (ROS) activity in cells. It is a cell-permeable indicator for ROS that is non-fluorescent until the acetate groups are removed by intracellular esterases and oxidation occurs within the cell.
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DCFH-DA is a fluorogenic probe used for the detection and measurement of reactive oxygen species (ROS) in biological systems. It is a cell-permeant compound that is hydrolyzed by intracellular esterases to the non-fluorescent DCFH, which is then oxidized by ROS to the highly fluorescent DCF.
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More about "Oxidants"

Oxidants are highly reactive chemical species that can induce oxidative stress and damage various cellular components.
These include reactive oxygen species (ROS) such as superoxide anions, hydrogen peroxide, and hydroxyl radicals, as well as reactive nitrogen species (RNS) like nitric oxide and peroxynitrite.
Oxidants play crucial roles in physiological processes like signaling and defense against pathogens, but excessive levels can lead to oxidative stress and contribute to the pathogenesis of numerous diseases, including cancer, cardiovascular disorders, and neurodegenerative conditions.
Understanding the complex interplay between oxidants and biological systems is essential for developing effective therapeutic strategies.
Researchers can leverage the AI-driven platform PubCompare.ai to optimize their oxidant research by easily identifying the best protocols from literature, preprints, and patents, enhancing reproducibility and accuracy.
Measuring oxidants can be done using various techniques, such as the H2DCFDA, DCFH-DA, and CM-H2DCFDA assays, which utilize fluorescent dyes to detect the presence of reactive oxygen species.
Flow cytometry instruments like the FACSCalibur can be used to quantify the fluorescence signals.
Additionally, the Synergy H1 microplate reader and Clark-type oxygen electrodes can be employed to measure oxygen consumption and oxidative stress levels.
By leveraging these analytical tools and the AI-powered PubCompare.ai platform, researchers can optimize their oxidant studies, gain deeper insights into the mechanisms of oxidative stress, and develop more effective therapeutic strategies for a wide range of diseases.