We performed complementation analysis, genetics, molecular biology, western blotting, immunostaining and generation of transgenic animals using standard techniques4 (link). Multiple new lines of the full-length ‘short’ isoform of Mical, the MicalΔredox mutation (MicalG→W; ref. 4 (link)) and the other transgenic animals were generated and used for all experiments. Adult bristles were examined and quantified by crossing adults at 25 °C: adult offspring from these crosses were first sorted according to genotype and then examined under a dissecting microscope. We genotyped pupae using a Zeiss Discovery M2 Bio fluorescence stereomicroscope, and all preparation, staging and dissection of pupae were done using standard approaches. We imaged, drew and quantified the adult bristles with the aid of the Discovery M2 Bio stereomicroscope, a motorized focus and zoom, a Zeiss AxioCam HR camera and three-dimensional-reconstruction software (Zeiss AxioVision, version 4.6.3, and Extended Focus software). All other bright-field, dark-field, differential interference contrast and fluorescence visualization, and imaging of bristles, embryos and growth cones, was done using a Zeiss Axio Imager upright microscope with motorized focus and zoom and an ApoTome module, and images were captured and quantified using the AxioCam HR camera and AxioVision software. All electron microscopy of pupae and negative staining of purified proteins was done using a FEI Tecnai G2 Spirit BioTWIN transmission electron microscope. We purified recombinant Mical proteins10 and recombinant p-hydroxybenzoate hydroxylase using our previously developed approaches. Drosophila fascin (also known as singed) complementary DNA was inserted in a bacterial expression vector, and recombinant Drosophila fascin protein was purified. All F-actin and Mical co-sedimentation assays and G-actin/F-actin ratio experiments were performed using standard approaches, as were all pyrene-labelled actin polymerization and depolymerization assays, actin bundling assays, tubulin polymerization assays and microtubule co-sedimentation assays.
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Chemicals & Drugs
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Hazardous or Poisonous Substance
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Pyrenes
Pyrenes
Pyrenes are a class of polycyclic aromatic hydrocarbons (PAHs) consisting of four fused benzene rings.
These compounds are widely distributed in the environment and are of interest due to their potential carcinogenic and mutagenic properties.
Pyrenes are commonly used as markers for environmental pollution and have applications in fields such as forensics, combustion chemistry, and molecular spectroscopy.
Researchers can leverage the power of AI-driven protocol comparisons through PubCompare.ai to enhance the reproducibility and accuracy of their Pyrenes research, easily locating and identifying the best protocols and products from literature, pre-prints, and patents.
This streamlines the research process and helps achieve optimal results.
These compounds are widely distributed in the environment and are of interest due to their potential carcinogenic and mutagenic properties.
Pyrenes are commonly used as markers for environmental pollution and have applications in fields such as forensics, combustion chemistry, and molecular spectroscopy.
Researchers can leverage the power of AI-driven protocol comparisons through PubCompare.ai to enhance the reproducibility and accuracy of their Pyrenes research, easily locating and identifying the best protocols and products from literature, pre-prints, and patents.
This streamlines the research process and helps achieve optimal results.
Most cited protocols related to «Pyrenes»
Actins
Adult
Animals, Transgenic
Bacteria
Biological Assay
Cloning Vectors
Dissection
DNA, Complementary
Drosophila
Electron Microscopy
Embryo
F-Actin
fascin
Fluorescence
G-Actin
Growth Cones
Hydroxybenzoates
Microscopy
Microtubules
Mixed Function Oxygenases
Mutation
Polymerization
Protein Isoforms
Proteins
Pupa
Pyrenes
Reconstructive Surgical Procedures
Sn protein, Drosophila
Transmission Electron Microscopy
Tubulin
Detailed procedures for cell culturing, microscopy analysis, recombinant protein purification, actin purification, pyrene-based polymerization and depolymerization assays, Nt-acetylation assays, and Western blot analysis are described in SI Materials and Methods and Table S3 .
Acetylation
Actins
Biological Assay
Cell Culture Techniques
Microscopy
Polymerization
Pyrenes
Recombinant Proteins
Western Blot
2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine
2-amino-3,8-dimethylimidazo(4,5-f)quinoxaline
Alkaline Phosphatase
Arecaceae
calf thymus DNA
Carcinogens
Cattle
Deoxyguanosine
Deoxyribonuclease I
Epoxy Resins
Escherichia coli
formic acid
indole
Isotopes
Pancreas
Penicillium citrinum
Phosphodiesterase I
Pyrenes
Rattlesnake Venoms
Solvents
Actins
Antibodies, Anti-Idiotypic
Biological Assay
Brain
Co-Immunoprecipitation
G-substrate
Lanugo
Maltose
Mus
Peptides
Proteins
Pyrenes
Reduced Glutathione
SDS-PAGE
Aldehydes
Amides
Bromides
Carbodiimides
Cell Culture Techniques
Cell Lines
Cells
Culture Media
Diagnosis
Fetal Bovine Serum
Gemcitabine
Gemcitabine Hydrochloride
gemcitabine triphosphate
High-Performance Liquid Chromatographies
HOE 33342
Hydrazones
Lung Cancer
LysoTracker
Malignant Neoplasms
Methanol
Molecular Probes
Mus
Penicillins
perchlorate
polyethylene glycol 2000
Pyrenes
Red DND-99
Solvents
stearic acid
Streptomycin
Sulfate, Sodium Dodecyl
Synthetic Drugs
tert-butyl carbazate
tetrabutylammonium chloride
tetrahydrofuran
triphosphate
Most recents protocols related to «Pyrenes»
A controlled pore glass support (CPG) derivatized with 2′-O-methyl-A, 2′-O-methyl-G, deoxythymidine, 5′,N-protected 2′-O-methylribo- (A, C, G, or U), 2′-O-TBDMS-ribo (A, C, G, or U) and deoxyribo (dT) phosphoramidites, 2-[2-(4,4’-dimethoxytrityloxy)ethylsulfonyl]ethyl-(2-cyanoethyl)-(N,N-diisopropyl)-phosphoramidite (CPR, Chemical Phosphorylation Reagent) were purchased from Glen Research Inc. (Sterling, VA, USA). Propargylamine, 1,6-diaminohexane, (pyrene-1-yl-methyl)amine hydrochloride, p-anisic (4-methoxybenzoic) acid, N,N′-dicyclohexylcarbodiimide (DCC), 1-hydroxybenzotriazole hydrate (HOBt), N,N-diisopropylethylamine (DIPEA), α-GalNac-azide, and 1 M TBAF solution in THF were purchased from Sigma-Aldrich (St. Louis, MO, USA), N-Boc-1,6-diaminohexane hydrochloride and ethoxytrimethylsilane were obtained from Alfa Aesar (Heysham, UK); cholesterol chloroformate and oleylamine were obtained from Acros Organics (Geel, Belgium); 3-amino-1-propanol, triphenylphosphine (PPh3), and 2,2′-dipyridyl disulfide ((PyS)2) were obtained from Fluka (St. Louis, MO, USA). FAM-NHS, FAM-azide, 10 mM Cu(II)-TBTA Stock in 55% DMSO, and ascorbic acid were purchased from Lumiprobe (Moscow, Russia). All solvents (THF, DMSO, CH3CN (various vendors)) were dried by 3 Å molecular sieves or by distillation and stored over CaH2. Small molecule ligands were analyzed by thin-layer chromatography (TLC) using DC-Alufolien Kieselgel 60 F254 plates (Merck, Darmstadt, Germany) at 254 nm ultraviolet light.
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1-hydroxybenzotriazole
2'-Deoxythymidine
3-amino-1-propanol
4-methoxybenzoic acid
Anise
Ascorbic Acid
Azides
Cholesterol
Dicyclohexylcarbodiimide
diisopropyl phosphoramidite
Distillation
Disulfides
Ligands
Methyl-gag
methylamine hydrochloride
oleylamine
phosphoramidite
Phosphorylation
propargylamine
Pyrenes
Solvents
Sulfoxide, Dimethyl
Thin Layer Chromatography
titanocene bis(trichloroacetate)
triphenylphosphine
Ultraviolet Rays
The membrane fluidity of SH-SY5Y cells was measured using the lipophilic pyrene probe pyrene decanoate (PDA) in the Membrane Fluidity Kit (ab189819, Marker Gene Technologies, Inc., Eugene, OR, USA). SH-SY5Y cells were seeded onto collagen-coated 96-well black plates at 1 × 106 cells/mL; treated with Aβo, Aβo + curcumin, or Aβo + GT863 for 3 h; and then stained with a fluorescent lipid reagent containing PDA. When PDA forms excimers from monomers in spatial motion, the emission spectrum of PDA shifts to red. The ratio of fluorescence emission at 400 and 470 nm from 360 nm excitation (monomer-to-excimer ratio) was measured using a Spectra Max i3 (Molecular Devices) and was used as an estimate of membrane fluidity.
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Cells
Collagen
Curcumin
Decanoates
Fluorescence
Fluorescent Probes
Genes
Lipids
Medical Devices
Membrane Fluidity
Pyrenes
Absolute ethyl alcohol, benzoic acid, HNO3, KCl, K3Fe(CN)6, K4Fe(CN)6·3H2O, and K2S2O8 were purchased from Aladdin Co. Ltd. (Shanghai, China). Lysozyme, Nickel-nitrilotriacetic acid (Ni-NTA), Sepharose, Phenylmethyl sulfonyl fluoride (PMSF), and color mixed protein marker PR1920 (11–245KD) were purchased from Solarbio Science & Technology Co., Ltd. (Beijing, China). N, N-Dimethylformamide (DMF), dichloromethane, 1,3,6,8-Tetra(4-carboxyphenyl)pyrene (H4PTPA), and Zirconyl chloride octahydrate (ZrOCl2·8H2O) were procured from Macklin Biochemical Co., Ltd. (Shanghai, China). Bovine serum albumin (BSA), N-Hydroxy succinimide (NHS), and 1-(3-Dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDC) were ordered from Sigma Life Science Co. Ltd. (Shanghai, China). g-CN was received from Nanjing XFNANO Technology Co., Ltd. (Nanjing, China). OTA-Apt was synthesized from Sangon Biotech Co., Ltd. (Shanghai, China), the OTA aptamer with -NH2 modification (5′-NH2GATCGGGTG TGGGTGGCGTAAAGGGAGCATCGGACA-3′). Ochratoxin B (OTB), ochratoxin C (OTC), aflatoxin B1 (AFB1), fumonisins B1 (FB1), zearalenone (ZEN), and deoxynivalenol (DON) were obtained from Pribolab Co., Ltd. (Qingdao, China). The coffee sample was obtained from the supermarket in Haikou. All solutions were prepared by deionized water obtained from the Millipore water purification system (18.2 MΩ cm−1, Milli-Q). Other reagents were analytical grade without further purification. The size and morphologies of the g-CN and NU-1000(Zr) nanocomposites were recorded by scanning electron microscope (SEM, FEI Helios G4 CX) and transmission electron microscopy (TEM, FEI Talos F200s). The cyclic voltammetry (CV) experiments were carried out on the CHI660e electrochemistry workstation (Shanghai CH Instruments, Shanghai, China) in 0.1 M KCl containing 5 mM [Fe(CN)6]3− and the ECL signals were taken by a model MPI-E electrochemiluminescence analyzer (Xi’An Remax Electronic Science & Technology Co. Ltd., Xi’an, China) in 0.1 M PBS containing 20 mM K2S2O8 and 0.1 M KCl. The standard three-electrode system was used in the experiment, with the modified glass carbon electrode (GCE) as the working electrode, the platinum wire as the auxiliary electrode, and the saturated calomel electrode (SCE) as the reference electrode for CV, the Ag/AgCl (3.5 M KCl) as the reference electrode for ECL.
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Absolute Alcohol
Aflatoxin B1
Benzoic Acid
calomel
Carbon
Chlorides
Coffee
deoxynivalenol
Dimethylformamide
fumonisin B1
Methylene Chloride
Muramidase
nickel nitrilotriacetic acid
ochratoxin B
ochratoxin C
Platinum
potassium persulfate
Proteins
Pyrenes
Scanning Electron Microscopy
Sepharose
Serum Albumin, Bovine
Succinimides
sulfuryl fluoride
Tetragonopterus
Transmission Electron Microscopy
Zearalenone
HEK293 cells (70% confluent, grown on 10-cm dishes) were transfected with pCAGGS-FLAG-CoblFL, pCAGGS-FLAG-CoblD1, pCAGGS-FLAG-CoblD2, pCAGGS-FLAG-CoblD3, pCAGGS-FLAG-CoblD4, pCAGGS-FLAG-CoblD5, pCAGGS-FLAG-EGFP-CoblFL, pCAGGS-FLAG-EGFP-CoblD5, pCAGGS-FLAG-EGFP-CoblΔ84, or pCAGGS-FLAG-mCherry-Cobl (10 μg per dish) using PEI MAX in accordance with the manufacturer’s instructions. At 72 hours after transfection, the cells in each dish were scraped with 200 μl of ice-cold HBS, homogenized (4000 rpm × 30 strokes with a tight-fitting Dounce homogenizer), and centrifuged (20,400g at 4°C) for 30 min. The supernatant was incubated with 100 μl of anti-Flag M2 affinity gel beads (Sigma-Aldrich, St. Louis, MO, USA; catalog no. A2220) at 4°C for 4 hours. After incubation, the beads were washed 10 times with ice-cold HBS and eluted with 3× FLAG peptide (Sigma-Aldrich, St. Louis, MO, USA; catalog no. F4799) in ice-cold Milli-Q deionized water or G buffer [2 mM tris-HCl (pH 8.0), 0.1 mM CaCl2, 0.2 mM adenosine 5′-triphosphate (ATP), 0.5 mM dithiothreitol (DTT; Nacalai Tesque, Kyoto, Japan; catalog no. 14128-46), if protein was used in subsequent cosedimentation assays, TIRF assays, and pyrene actin polymerization assays], following the manufacturer’s instructions. Protein solutions were dialyzed in a cellulose dialysis membrane soaked in ice-cold Milli-Q deionized water or G buffer (if protein was used in subsequent cosedimentation assays, TIRF assays, and pyrene actin polymerization assays) to remove the 3× FLAG peptide at 4°C overnight and ultracentrifuged at 300,000g at 4°C for 20 min. The purity of the supernatant was assessed using SDS-PAGE and Coomassie brilliant blue (CBB) staining.
Actins
Adenosine Triphosphate
Biological Assay
brilliant blue G
Buffers
Cellulose
Cerebrovascular Accident
Cold Temperature
Dialysis
Dithiothreitol
FLAG peptide
HEK293 Cells
Hyperostosis, Diffuse Idiopathic Skeletal
Ice
Polymerization
Proteins
Pyrenes
SDS-PAGE
Tissue, Membrane
Transfection
Tromethamine
Monomers tert-butyl methacrylate (tBMA), oligo ethylene glycol methyl ether methacrylate (OEGMA) (average Mn = 950 g/mol) (dissolved in 1,4-dioxane) and ethylene glycol dimethacrylate (EGDMA) were passed through a column packed with inhibitor removers (butylated hydroxytoluene and hydroquinone monomethyl ether, from Sigma-Aldrich, Athens, Greece) for purification. We recrystallized 2,2′-azobisisobutyronitrile (AIBN) from methanol, and 1,4-dioxane (99.8% pure) was dried over molecular sieves. N-hexane (96% pure), tetrahydrofuran (THF), trifluoroacetic acid (TFA), deuterated chloroform (CDCL3), 4-cyano-4-(phenyl-carbonothioylthio) pentanoic acid (CPAD), pyrene, curcumin (CUR), and lysozyme (Lys) were used as received. Materials and chemicals mentioned above were purchased from Sigma-Aldrich, except CUR and EGDMA which were purchased from Merck.
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azobis(isobutyronitrile)
butyl methacrylate
Chloroform
Curcumin
dioxane
Ethers
ethylene dimethacrylate
Glycol, Ethylene
Hydroxytoluene, Butylated
mequinol
Methanol
Methylmethacrylate
Muramidase
n-hexane
Oligonucleotides
Pyrenes
TERT protein, human
tetrahydrofuran
Trifluoroacetic Acid
valeric acid
Top products related to «Pyrenes»
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Pyrene is a polycyclic aromatic hydrocarbon compound. It is a crystalline solid at room temperature and is commonly used as a fluorescent probe and as a precursor in organic synthesis.
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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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DMSO is a versatile organic solvent commonly used in laboratory settings. It has a high boiling point, low viscosity, and the ability to dissolve a wide range of polar and non-polar compounds. DMSO's core function is as a solvent, allowing for the effective dissolution and handling of various chemical substances during research and experimentation.
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3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) is a colorimetric assay used to measure cell metabolic activity. It is a tetrazolium-based compound that is reduced by living cells, producing a purple formazan product that can be quantified spectrophotometrically.
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Methanol is a clear, colorless, and flammable liquid that is widely used in various industrial and laboratory applications. It serves as a solvent, fuel, and chemical intermediate. Methanol has a simple chemical formula of CH3OH and a boiling point of 64.7°C. It is a versatile compound that is widely used in the production of other chemicals, as well as in the fuel industry.
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Benzo[a]pyrene is a polycyclic aromatic hydrocarbon commonly used as a reference compound in various laboratory applications. It serves as a standard for analytical techniques and is often employed in research, environmental monitoring, and regulatory compliance testing.
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MTT is a colorimetric assay used to measure cell metabolic activity. It is a lab equipment product developed by Merck Group. MTT is a tetrazolium dye that is reduced by metabolically active cells, producing a colored formazan product that can be quantified spectrophotometrically.
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2,4,6-trinitrobenzenesulfonic acid (TNBS) is a laboratory reagent commonly used in analytical and biochemical applications. It is a crystalline solid with a chemical formula C6H3N3O9S. TNBS is primarily used as a derivatizing agent for the detection and quantification of primary amines. Its core function is to facilitate the spectrophotometric determination of amino groups in various biomolecules and chemical compounds.
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ADP is a high-performance liquid chromatography (HPLC) system designed for analytical and preparative separations. It features advanced technology to deliver precise and reproducible results. The core function of ADP is to facilitate the separation, identification, and purification of complex mixtures of chemical compounds.
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Dichloromethane is a clear, colorless, and volatile liquid commonly used as a laboratory solvent. It has a molecular formula of CH2Cl2 and a molar mass of 84.93 g/mol. Dichloromethane is known for its high solvent power and low boiling point, making it suitable for various laboratory applications where a versatile and efficient solvent is required.
More about "Pyrenes"
Pyrenes are a class of polycyclic aromatic hydrocarbons (PAHs), consisting of four fused benzene rings.
These aromatic compounds are widely distributed in the environment and are of particular interest due to their potential carcinogenic and mutagenic properties.
Pyrenes are commonly employed as markers for environmental pollution and have numerous applications in fields such as forensics, combustion chemistry, and molecular spectroscopy.
Researchers can leverage the power of AI-driven protocol comparisons through PubCompare.ai to enhance the reproducibility and accuracy of their Pyrenes research.
This platform enables researchers to easily locate and identify the best protocols and products from literature, pre-prints, and patents, streamlining the research process and helping to achieve optimal results.
Pyrene, a specific type of Pyrene, is a widely studied compound within this class of PAHs.
It is often used in combination with other compounds, such as fetal bovine serum (FBS) and dimethyl sulfoxide (DMSO), to conduct various experiments and assays.
These assays may include the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, which is used to assess cell viability, and the 2,4,6-trinitrobenzenesulfonic acid (TNBS) assay, which is used to measure protein concentrations.
Methanol, another commonly used solvent, is often employed in the extraction and analysis of Pyrenes and other PAHs.
Benzo[a]pyrene, a specific Pyrene compound, is known for its potent carcinogenic properties and is frequently studied in the context of environmental and health-related research.
Researchers can further streamline their Pyrenes research by leverageing the power of AI-driven protocol comparisons through PubCompare.ai.
This tool can help identify the most effective and reproducible protocols, as well as the best products and reagents, from the vast body of scientific literature, pre-prints, and patents.
By harnessing the power of AI, researchers can optimize their Pyrenes research, leading to more accurate and reliable results.
Abbreviations commonly used in Pyrenes research include MTT, ADP (adenosine diphosphate), and DCM (dichloromethane).
These acronyms are frequently encountered in the literature and can help researchers navigate the complexities of this field more efficiently.
These aromatic compounds are widely distributed in the environment and are of particular interest due to their potential carcinogenic and mutagenic properties.
Pyrenes are commonly employed as markers for environmental pollution and have numerous applications in fields such as forensics, combustion chemistry, and molecular spectroscopy.
Researchers can leverage the power of AI-driven protocol comparisons through PubCompare.ai to enhance the reproducibility and accuracy of their Pyrenes research.
This platform enables researchers to easily locate and identify the best protocols and products from literature, pre-prints, and patents, streamlining the research process and helping to achieve optimal results.
Pyrene, a specific type of Pyrene, is a widely studied compound within this class of PAHs.
It is often used in combination with other compounds, such as fetal bovine serum (FBS) and dimethyl sulfoxide (DMSO), to conduct various experiments and assays.
These assays may include the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, which is used to assess cell viability, and the 2,4,6-trinitrobenzenesulfonic acid (TNBS) assay, which is used to measure protein concentrations.
Methanol, another commonly used solvent, is often employed in the extraction and analysis of Pyrenes and other PAHs.
Benzo[a]pyrene, a specific Pyrene compound, is known for its potent carcinogenic properties and is frequently studied in the context of environmental and health-related research.
Researchers can further streamline their Pyrenes research by leverageing the power of AI-driven protocol comparisons through PubCompare.ai.
This tool can help identify the most effective and reproducible protocols, as well as the best products and reagents, from the vast body of scientific literature, pre-prints, and patents.
By harnessing the power of AI, researchers can optimize their Pyrenes research, leading to more accurate and reliable results.
Abbreviations commonly used in Pyrenes research include MTT, ADP (adenosine diphosphate), and DCM (dichloromethane).
These acronyms are frequently encountered in the literature and can help researchers navigate the complexities of this field more efficiently.