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Free Radicals

Free Radicals: Highly reactive molecules containing an unpaired electron in an outer orbit.
These molecules are capable of damaging cells by reacting with and altering lipids, proteins, and DNA.
Free radicals are implicated in the pathogenesis of various diseases including cancer, aging, and neurodegenerative disorders.
Discovering effective strategies to combat free radical damage is a critical area of biomedical research.

Most cited protocols related to «Free Radicals»

Electron microscopy, annexin V labeling, and DAPI staining were performed as described previously (Madeo et al., 1997 (link)). For the TdT-mediated dUTP nick end labeling (TUNEL) test, cells were prepared as described (Madeo et al., 1997 (link)), and the DNA ends were labeled using the In Situ Cell Death Detection Kit, POD (Boehringer Mannheim). Yeast cells were fixed with 3.7% formaldehyde, digested with lyticase, and applied to a polylysine-coated slide as described for immunofluorescence (Adams and Pringle, 1984 (link)). The slides were rinsed with PBS and incubated with 0.3% H2O2 in methanol for 30 min at room temperature to block endogenous peroxidases. The slides were rinsed with PBS, incubated in permeabilization solution (0.1% Triton X-100 and 0.1% sodium citrate) for 2 min on ice, rinsed twice with PBS, incubated with 10 μl TUNEL reaction mixture (terminal deoxynucleotidyl transferase 200 U/ml, FITC-labeled dUTP 10 mM, 25 mM Tris-HCl, 200 mM sodium cacodylate, 5 mM cobalt chloride; Boehringer Mannheim) for 60 min at 37°C, and then rinsed 3× with PBS. For the detection of peroxidase, cells were incubated with 10 μl Converter-POD (anti-FITC antibody, Fab fragment from sheep, conjugated with horseradish peroxidase) for 30 min at 37°C, rinsed 3× with PBS, and then stained with DAB-substrate solution (Boehringer Mannheim) for 10 min at room temperature. A coverslip was mounted with a drop of Kaiser's glycerol gelatin (Merck). As staining intensity varies, only samples from the same slide were compared.
Free intracellular radicals were detected with dihydrorhodamine 123, dichlorodihydrofluorescein diacetate (dichlorofluorescin diacetate), or dihydroethidium (hydroethidine; Sigma Chemical Co.). Dihydrorhodamine 123 was added ad-5 μg per ml of cell culture from a 2.5-mg/ml stock solution in ethanol and cells were viewed without further processing through a rhodamine optical filter after a 2-h incubation. Dichlorodihydrofluorescein diacetate was added ad-10 μg per ml of cell culture from a 2.5 mg/ml stock solution in ethanol and cells were viewed through a fluorescein optical filter after a 2-h incubation. Dihydroethidium was added ad-5 μg per ml of cell culture from a 5 mg/ml aqueous stock solution and cells were viewed through a rhodamine optical filter after a 10-min incubation. For flow cytometric analysis, cells were incubated with dihydrorhodamine 123 for 2 h and analyzed using a FACS® Calibur (Becton Dickinson) at low flow rate with excitation and emission settings of 488 and 525–550 nm (filter FL1), respectively.
Free spin trap reagents N-tert-butyl-α−phenylnitrone (PBN; Sigma-Aldrich) and 3,3,5,5,-tetramethyl-pyrroline N-oxide (TMPO; Sigma-Aldrich) were added directly to the cell cultures as 10-mg/ml aqueous stock solutions. Viability was determined as the portion of cell growing to visible colonies within 3 d.
To determine frequencies of morphological phenotypes (TUNEL, Annexin V, DAPI, dihydrorhodamine 123), at least 300 cells of three independent experiments were evaluated.
Publication 1999
3,3,5,5-tetramethyl-1-pyrroline N-oxide Annexin A5 Antibodies, Anti-Idiotypic Cacodylate Cardiac Arrest Cell Culture Techniques Cell Death Cells cobaltous chloride DAPI deoxyuridine triphosphate dichlorofluorescin dihydroethidium dihydrorhodamine 123 DNA Nucleotidylexotransferase Domestic Sheep Electron Microscopy Ethanol Flow Cytometry Fluorescein Fluorescein-5-isothiocyanate Formaldehyde Free Radicals Gelatins Glycerin Horseradish Peroxidase hydroethidine Immunofluorescence Immunoglobulins, Fab In Situ Nick-End Labeling lyticase Methanol Oxides Peroxidase Peroxidases Peroxide, Hydrogen Phenotype Polylysine Protoplasm pyrroline Rhodamine Sodium Sodium Citrate TERT protein, human Triton X-100 Tromethamine Yeast, Dried
Free radical scavenging ability of the extracts was tested by DPPH radical scavenging assay as described by Blois [23 (link)] and Desmarchelier et al. [24 (link)]. The hydrogen atom donating ability of the plant extractives was determined by the decolorization of methanol solution of 2,2-diphenyl-1-picrylhydrazyl (DPPH). DPPH produces violet/purple color in methanol solution and fades to shades of yellow color in the presence of antioxidants. A solution of 0.1 mM DPPH in methanol was prepared, and 2.4 mL of this solution was mixed with 1.6 mL of extract in methanol at different concentrations (12.5–150 μg/mL). The reaction mixture was vortexed thoroughly and left in the dark at RT for 30 min. The absorbance of the mixture was measured spectrophotometrically at 517 nm. BHT was used as reference. Percentage DPPH radical scavenging activity was calculated by the following equation: %DPPH radical scavenging activity=A0-A1/A0×100 where A0 is the absorbance of the control, and A1 is the absorbance of the extractives/standard. Then  % of inhibition was plotted against concentration, and from the graph IC50 was calculated. The experiment was repeated three times at each concentration.
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Publication 2015
Antioxidants Biological Assay diphenyl Free Radicals Hydrogen Methanol Plants Psychological Inhibition Viola
MRS was performed on either a Bruker 7 T horizontal bore micro-imaging system or a Philips 3 T clinical scanner. In vivo tumor implantation and DCA treatment: Human HT29 carcinoma or SW1222 colon carcinoma cells (5×106) were propagated subcutaneously in NCr nude mice. Tumors were scanned on day one, mice were then treated on days two and three with 200 mg/kg DCA p.o. and a final dose was given on day four, one hour before the post-treatment scan. MR Coils: Mice bearing cancer xenografts of volume 250–300 mm3 were positioned with their tumor within either a custom made 1.8 cm diameter (Bruker 7 T) or 2 cm diameter (Philips 3 T) 13C transmit/receive surface coil at the isocentre of the spectrometer. Hyperpolarized 13C in vivo: A solution weighing 26 mg [1-13C]pyruvic acid (99% isotopically enriched, Sigma Aldrich, United Kingdom) containing 15 mM trityl free radical OX63 (GE Healthcare) and 1.5 mM gadolinium Dotarem-DOTA (Guerbet, United Kingdom) was polarized in a HyperSense® DNP polarizer (Oxford Instruments Molecular Biotools Ltd, UK) for 1 hour. The hyperpolarized pyruvic acid was dissolved in 4 ml Trizma buffer containing 80 mM NaOH, 1 mM EDTA, 50 mM NaCl resulting in a 80 mM pyruvate solution at pH 7, 37°C. A solution of 175 µl 80 mM hyperpolarized [1-13C]pyruvate was administered in situ via a lateral tail vein over approximately 5 s. A series of 128 13C spectra were recorded at 75 MHz (Bruker 7 T), every 2 s using a 20° pulse-and-acquire sequence (1 transient, 32 k time domain points, 15 kHz spectral width) or at 32 MHz (Philips 3 T) every 3 s using a 20° slice selective pulse-and-acquire sequence (10 mm slice thickness, 1 transient, 2048 time domain points, 8 kHz spectral width).
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Publication 2013
Buffers Cancer of Colon Carcinoma Cells Dotarem Edetic Acid Free Radicals gadolinium 1,4,7,10-tetraazacyclododecane-N,N',N'',N'''-tetraacetate Heterografts Homo sapiens HT29 Cells Malignant Neoplasms Mice, Nude Mus Neoplasms Ovum Implantation Pulse Rate Pyruvate Pyruvic Acid Radionuclide Imaging Sodium Chloride Tail Transients Trizma Veins
The leaf galls in different developmental stages as well as the ungalled leaves were collected from P. pinnata trees and washed thoroughly in distilled water for removing mites and debris. The cleaned samples were cut into small pieces using a sterilized sharp blade and dried at room temperature for 10–15 days in a container covered with a cotton layer. The dried samples were then powdered in a mechanical grinding machine (Mixer grinder), to facilitate effective contact between the solvent and the samples.
Using methanol, cold extraction was carried out based on the methods of Anjali Soni [38 ] with slight modifications (48 h at 20 °C through continuous shaking at 120 rpm in a rotary shaking incubator). The crude extracts were stored in air tight vials in a refrigerator for subsequent in-vitro antioxidant DPPH free radical scavenging assay, carried out following the methods of Blois [39 (link)]. The DPPH free radical scavenging assay was the general test used to evaluate the antioxidant capacity of plant extracts. Commonly, scavenging assay was expressed as IC50, (the amount of antioxidant necessary to decrease the initial concentration of DPPH by 50%). The antioxidant activity and IC50 values were negatively correlated, the higher IC50 value indicated the lower antioxidant capacity and vice versa [38 ]. Three independent assays were conducted and inhibition percentage (I%) of different concentrations of extracts and controls were calculated by following the equation [38 ] given below; IC50 calculated by using probit-regression analysis, this indicated how much of the extracts needed to scavenge or inhibit the 50% of free-radical.
I%=AbsorbanceofcontrolAbsorbanceoftestAbsorbanceofcontrol×100
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Publication 2021
Antioxidant Activity Antioxidants Biological Assay Cardiac Arrest Cold Temperature Complex Extracts Free Radicals Gossypium Methanol Mites Plant Extracts Psychological Inhibition Solvents Trees
MRS was performed at 37°C on a Bruker 11.7 T spectrometer. Hyperpolarized 13C in vitro: 18 mg [1-13C]pyruvic acid (99% isotopically enriched, Sigma-Aldrich, UK containing 15 mM trityl free radical OX63, Oxford Instruments, UK) was polarized in a HyperSense® DNP polarizer (Oxford Instruments Molecular Biotools Ltd, UK) for 1 hour. The polarized sample was dissolved in 4 ml aqueous buffer (50 mM sodium lactate, 50 mM NaOH, 1 mM EDTA) resulting in a 50 mM pyruvate solution at pH 7, 37°C. A solution of 100 µl, 50 mM hyperpolarized [1-13C]pyruvate was mixed with 500 µl cell suspension, and 13C spectra were acquired every 2 s using a single scan and a 10° flip angle.
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Publication 2013
Buffers Cells Edetic Acid Free Radicals Lactate, Sodium Pyruvate Pyruvic Acid Radionuclide Imaging

Most recents protocols related to «Free Radicals»

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Example 1

A general synthetic method using a free radical polymerization within a water-in-oil (w/o) microemulsion system was developed for the synthesis of thermoresponsive microcarriers (FIG. 2). In this process, the feed solution contained the monomer of the thermoresponsive component N-isopropylacrylamide (IPAAm) and monomers with functional groups that could promote cell attachment or permit further functionalization: methacrylic acid (MA), (3-acrylamidopropyl)trimethylammonium chloride (APTACI), N-[3-(dimethylamino)propyl]methacrylamide (DMAPM) or 2-aminoethyl methacrylate hydrochloride (AMHCI). The monomers were polymerized with the crosslinker N,N′-methylenebis(acrylamide) (MBA) in a water/toluene microemulsion system. Free radical polymerization was initiated at room temperature with ammonium persulfate/N,N,N′,N′-tetramethylethylenediamine or at higher temperatures with the azo initiator 2,2′-azobis[2-(2-imidazolin-2-yl)propane]dihydrochloride. Microcarriers produced in this way were sieved, and the fraction in the size range of 125-177 μm was used.

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Patent 2024
2-aminoethylmethacrylate Acrylamide ammonium peroxydisulfate Anabolism Cell-Matrix Junction Chlorides Fever Free Radicals methacrylamide methacrylic acid Polymerization Propane tetramethylethylenediamine Toluene

Example 2

Mitsiu Chemical Mipelon PM-200 consists of 10 micron high molecular weight polyethylene particles. Into a 20 ml vial, 1.00 g of Mipelon and 5.00 g of 20 parts n-heptane and 1 part divinylbenzene (80% purity) with 1% AIBN (of the divinylbenzene mass) as the thermal free radical initiator were added. The vial was heated to 65° C. and agitated for 52 hours. After polymerization, the particles were allowed to settle, the excess liquid (n-heptane) was decanted. The particles were then rinsed with three aliquots of acetone (15 mL per aliquot) to remove any excess monomer or porogen. The supernatant was cloudy for the first two rinses indicating some particles and colloidal DVB. After the final rinse, the vials were placed in the oven with the caps off for one hour to dry.

The scanning electron micrographs in FIG. 2 show the uncoated and coated polyethylene particles. A thin layer of the DVB polymer, as well as colloidal size particles of the polymer can be seen throughout the surface of the PE particles. The DVB polymer layer can be derivatized to add additional chemical functionality, including hydrophilic and/or ion exchange groups

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Patent 2024
Acetone azobis(isobutyronitrile) divinylbenzene Edema Electrons Free Radicals Heptane Ion Exchange n-heptane Polyethylenes Polymerization Polymers Vision
The rationale for this specific MAA-EGDMA-AIBN system where MAA,
EGDMA, and AIBN were selected as the functional monomer, cross-linker,
and photoinitiator, respectively, has been discussed in detail elsewhere.25 (link) However, in brief, the presence of the carboxylic
functional group in MAA enables hydrogen bonding to occur in a manner
similar to biological recognition systems.70 (link) EGDMA encourages the conservation of spatial integrity subsequent
to lactate extraction, and AIBN is a common radical initiator often
adopted in bulk polymerization syntheses.71 (link) Polymerization was carried out at 4 °C to promote MIP recapturing
capacity and selectivity by decreasing the kinetic energy and simultaneously
increasing the stability of the prepolymerization complex.72 (link)−74 (link) Anhydrous dichloromethane was the solvent of choice as its nonpolar
nature promotes stability during polymerization, avoiding any reactions
with free radicals that could interfere with template–monomer
interactions. To encourage the solubility of lactate, 10% (volume)
anhydrous methanol was added as it is a protic solvent capable of
hydrogen bonding.75 (link)
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Publication 2023
Anabolism azobis(isobutyronitrile) Biopharmaceuticals Dietary Fiber Free Radicals Genetic Selection Kinetics Lactate Methanol Methylene Chloride Polymerization Solvents
The anthropometric characteristics were recorded as described by Stavrou et al. (16 (link)). Tanita MC-980 (Arlington Heights, IL, USA) was used for body composition assessment. We performed the 6MWT, as described in the ATS guidelines, to assess the functional status of the patients (17 (link)). The parameters O2 saturation (SpO2), heart rate (HR) (Nonin 9590 Onyx Vantage, USA), blood pressure (Mac, Tokyo, Japan), and self-assessed lower limb fatigue and dyspnea (via Borg Scale CR-10) (18 (link)) were recorded at predetermined time-points of the 6MWT (16 (link)). The handgrip strength test was performed using an electronic dynamometer (Camry EH 101, South El Monte, CA, USA) (19 (link)). Patients were asked to perform as many repetitions as possible at a self-regulated pace (safe and comfortable) from a sitting-to-standing position while the arms were crossed at the shoulders so as not to use them as support to assess lower limb strength (30-s Sit-to-Stand test) (20 (link)). Blood sampling of 10 mL peripheral venous blood for the determination of reactive oxygen metabolites (d-ROMs test, free radical analytical system, FRAS5, Parma, Italy) was performed 20 min before physical fitness tests (21 (link)). Pulmonary function tests were performed according to the ATS/ERS guidelines (22 (link)) in the sitting position using a MasterScreen-CPX pneumotachograph (VIASYS HealthCare, Germany). Prior to physical fitness tests, all patients answered questionnaires to measure the quality and patterns of sleep using the Pittsburgh Sleep Quality Index (PSQI) (23 (link)), cognitive impairment was assessed using the Montreal Cognitive Assessment (MoCA) (24 (link)), STOP-Bang for stratification for obstructive sleep apnea risk (25 (link)), and (iv) work ability index (WAI) to investigate the ability to return to work without restrictions (26 ).
A stationary seated bike (Toorx, Chrono Line, BRX R 300) with bluetooth capabilities was used for the measurements. It was connected to the VR application, the Meta Quest 2 (Facebook Technologies, LCC, Hacker Way, Menlo Park, CA, USA) device headset and controllers, and a computer (27 (link)). This VR training system is called VRADA (VR exercise App for Dementia and Alzheimer's patients) version 4.1 and has been developed by ORAMA-VR and Biomechanical Solutions Engineering based on interviews with older people with mild cognitive impairment. The application of the VR training system includes cognitive exercises with simple math calculations and requests users to observe and count animals that appear in their VR to enhance cognitive health and motivational techniques to address the issue of low motivation for exercise. The system gives an opportunity for each participant to choose their exercise duration, landscape in which they will cycle (forest, beach, or snowy landscape), motivating words that they want to hear during their performance (“Calmly,” “I can,” “I will do it well,” “Very nice,” or no words) and the music to enjoy while cycling. VR controllers with raycast were used as a selection mechanism that allows the user to select an answer by pointing the ray at the button and pressing the trigger button at the controller. Moreover, participants received feedback during their performance, such as indications about cycling time, distance, and speed, and could self-monitor their performance using screen-provided data. They were requested to cycle at a constant speed of between 15 and 20 km/h1. Simultaneously, speed and distance were recorded every 45 s. At the end of the cycling procedure, participants were informed their scores in math questions, the distance they covered, and they were asked to answer four more questions assessing if they were tired, if they liked the way they exercised, how many animals they saw, and if they repeated the motivational word. In this study, all participants performed the exercise in the forest.
The HR, SpO2, and self-assessment of lower limb fatigue and dyspnea were performed before and at the end of each exercise condition (VR, no-VR, SSE-VR, and 6MWT) for each patient.
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Publication 2023
Animals Arm, Upper BLOOD Blood Pressure Body Composition Cognition Cognitive Impairments, Mild Dementia Disorders, Cognitive Dyspnea Fatigue Forests Free Radicals Hearing Lower Extremity Medical Devices Motivation Oximetry Oxygen Patients Precipitating Factors Rate, Heart Saturation of Peripheral Oxygen Self-Assessment Shoulder Sleep Sleep Apnea, Obstructive Snow Tests, Pulmonary Function Veins

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Publication 2023
Biological Assay diphenyl Free Radicals Light Rutin

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DPPH is a chemical compound used as a free radical scavenger in various analytical techniques. It is commonly used to assess the antioxidant activity of substances. The core function of DPPH is to serve as a stable free radical that can be reduced, resulting in a color change that can be measured spectrophotometrically.
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Trolox is a water-soluble vitamin E analog that functions as an antioxidant. It is commonly used in research applications as a reference standard for measuring antioxidant capacity.
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The UV-1800 is a UV-Visible spectrophotometer manufactured by Shimadzu. It is designed to measure the absorbance or transmittance of light in the ultraviolet and visible wavelength regions. The UV-1800 can be used to analyze the concentration and purity of various samples, such as organic compounds, proteins, and DNA.
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Ascorbic acid is a chemical compound commonly known as Vitamin C. It is a water-soluble vitamin that plays a role in various physiological processes. As a laboratory product, ascorbic acid is used as a reducing agent, antioxidant, and pH regulator in various applications.
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Methanol is a clear, colorless, and flammable liquid that is widely used in various industrial and laboratory applications. It serves as a solvent, fuel, and chemical intermediate. Methanol has a simple chemical formula of CH3OH and a boiling point of 64.7°C. It is a versatile compound that is widely used in the production of other chemicals, as well as in the fuel industry.
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Gallic acid is a naturally occurring organic compound that can be used as a laboratory reagent. It is a white to light tan crystalline solid with the chemical formula C6H2(OH)3COOH. Gallic acid is commonly used in various analytical and research applications.
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ABTS is a laboratory reagent used for the detection and quantification of peroxidase activity. It is a colorimetric substrate that undergoes a color change when oxidized by peroxidases, allowing for spectrophotometric or colorimetric analysis.
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The Microplate reader is a versatile laboratory instrument used to measure and analyze the optical properties of samples in microplates. It is designed to quantify absorbance, fluorescence, or luminescence signals from various assays and applications.

More about "Free Radicals"

Free Radicals are highly reactive molecules with an unpaired electron, capable of damaging cells by reacting with and altering lipids, proteins, and DNA.
These reactive oxygen species (ROS) are implicated in the pathogenesis of various diseases, including cancer, aging, and neurodegenerative disorders.
Discovering effective strategies to combat free radical damage is a critical area of biomedical research.
Antioxidants like DPPH (2,2-diphenyl-1-picrylhydrazyl), Trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid), and Ascorbic acid (Vitamin C) can help neutralize free radicals by donating a hydrogen atom or an electron.
Spectrophotometric techniques using instruments like the UV-1800 and UV-1601 are commonly employed to measure the free radical scavenging activity of compounds.
Methods like the ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid)) and Gallic acid assays can quantify the total antioxidant capacity of samples.
Microplate readers like the Multiskan GO can be used to efficiently screen a large number of samples for their free radical-fighting properties.
Solvent choice, such as Methanol, is an important consideration when extracting and analyzing antioxidant compounds.
Optimizing research protocols to combat free radicals and enhance reproducibility is a key focus area.
AI-driven platforms like PubCompare.ai can help researchers quickly locate and compare relevant protocols from literature, preprints, and patents, ensuring they identify the best approaches to tackle free radical challenges and streamline their research.