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Sodium nitrate

Sodium nitrate is an inorganic salt with the chemical formula NaNO3.
It is a colorless, odorless crystalline solid that is commonly used as a food preservative, oxidizing agent, and in the production of fertilizers, explosives, and pyrotechnics.
Sodium nitrate occurs naturally in arid regions, such as the Atacama Desert in Chile, and can also be synthetically produced.
It plays a crucial role in various industrial and agricultural applications, and understanding its properties and usages is important for researchers working in related fields.

Most cited protocols related to «Sodium nitrate»

nPM collection and transfer into aqueous suspension. We collected nPM with a high-volume ultrafine particle (HVUP) sampler (Misra et al. 2002 ) at 400 L/min flow in Los Angeles City near the CA-110 Freeway. These aerosols represent a mix of fresh ambient PM mostly from vehicular traffic nearby this freeway (Ning et al. 2007 (link)). The HVUP sampler consists of an ultrafine particle slit impactor, followed by an after-filter holder. The nPM (diameter < 200 nm) was collected on pretreated Teflon filters (20 × 25.4 cm, polytetrafluoroethylene, 2 μm pore; Pall Life Sciences, Covina, CA). We transferred the collected nPM into aqueous suspension by 30 min soaking of nPM-loaded filters in Milli-Q deionized water (resistivity, 18.2 MW; total organic compounds < 10 ppb; particle free; bacteria levels < 1 endotoxin units/mL; endotoxin-free glass vials), followed by vortexing (5 min) and sonication (30 min). As a control for in vitro experiments with resuspended nPM, fresh sterile filters were sham extracted. Aqueous nPM suspensions were pooled and frozen as a stock at –20°C, which retains chemical stability for ≥ 3 months (Li N et al. 2003; Li R et al. 2009). For in vitro experiments, nPM suspensions were diluted in culture medium, vortexed, and added directly to cultures.
Animals and exposure conditions. The nPM suspensions were reaerosolized by a VORTRAN nebulizer (Vortran Medical Technology 1 Inc., Sacramento, CA) using compressed particle-free filtered air [see Supplemental Material, Figure S1 (doi:10.​1289/ehp.1002973)]. Particles were diffusion dried by passing through silica gel; static charges were removed by passing over polonium-210 neutralizers. Particle sizes and concentrations were continuously monitored during exposure at 0.3 L/min by a scanning mobility particle sizer (SMPS model 3080; TSI Inc., Shoreview, MN). The nPM mass concentration was determined by pre- and postweighing the filters under controlled temperature and relative humidity. Inorganic ions [ammonium (NH4+), nitrate (NO3), sulfate (SO42–)] were analyzed by ion chromatography. PM-bound metals and trace elements were assayed by magnetic-sector inductively coupled plasma mass spectroscopy. Water-soluble organic carbon was assayed by a GE-Sievers liquid analyzer (GE-Sievers, Boulder, CO). Analytic details for nPM-bound species are given by Li R et al. (2009). Samples of the reaerosolized nPM were collected on parallel Teflon filters for electron paramagnetic resonance (EPR) analysis.
Mice (C57BL/6J males, 3 months of age) were maintained under standard conditions with ad libitum Purina Lab Chow (Newco Purina, Rancho Cucamonga, CA) and sterile water. Just before nPM exposure, mice were transferred from home cages to exposure chambers that allowed free movement. Temperature and airflow were controlled for adequate ventilation and to minimize buildup of animal-generated contaminants [skin dander, carbon dioxide (CO2), ammonia]. Reaerosolized nPM or ambient air (control) was delivered to the sealed exposure chambers for 5 hr/day, 3 days/week, for 10 weeks. Mice did not lose weight or show signs of respiratory distress. Mice were euthanized after isoflurane anesthesia, and tissue was collected and stored at –80°C. All rodents were treated humanely and with regard for alleviation of suffering; all procedures were approved by the University of Southern California Institutional Animal Care and Use Committee.
EPR spectroscopy of nPM. The reaerosolized nPM was collected on filters (described above), which were inserted directly in the EPR quartz tube (Bruker EPR spectrometer; Bruker, Rheinstetten, Germany); spectra were measured at 22°C. The g-value was determined following calibration of the EPR instrument using DPPH (2,2-diphenyl-1-picrylhydrazyl) as a standard. The EPR signal for DPPH was measured and the corresponding g-value was calculated. The difference from the known g-value of 2.0036 for DPPH was then used to adjust the observed g-value for the sample.
Cell culture and nPM exposure. Hippocampal slices from postnatal day 10–12 rats were cultured 2 weeks in a humidified incubator (35°C/5% CO2) (Jourdi et al. 2005 (link)) with nPM suspensions added for 24–72 hr of exposure. Primary neurons from embryonic day 18 rat cerebral cortex were plated at 20,000 neurons/cm2 on cover slips coated with poly-d-lysine/laminin and cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with B27, at 37°C in 5% CO2 atmosphere (Rozovsky et al. 2005 (link)). Primary glial cultures from cerebral cortex of neonatal day 3 rats (F344) were plated at 200,000 cells/cm2 in DMEM/F12 medium supplemented with 10% fetal bovine serum and 1% l-glutamine and incubated as described above (Rozovsky et al. 1998 (link)). For conditioned medium experiments, glial cultures were treated with 10 mg nPM/mL; after 24 hr, media were transferred by pipette to neuron cultures.
Neurite outgrowth and toxicity assays. After treatments, neurons were fixed in 4% paraformaldehyde and immunostained with anti–β-III-tubulin (1:1,000, rabbit; Sigma Chemical Co., St. Louis, MO); F-actin was stained by rhodamine phalloidin (1:40; Molecular Probes, Carlsbad, CA). A neurite was defined as a process extending from the cell soma of the neuron that was immunopositive for both β-III-tubulin (green) and F-actin (red). The length of neurites was measured using NeuronJ software (Meijering et al. 2004 (link)). Growth cones were defined by the presence of actin-rich filopodia and lamellipodia (Kapfhammer et al. 2007 ). Collapsed growth cones were defined as actin-rich neuritic endings in which filopodia and lamellipodia were indistinguishable. In neurite outgrowth and growth cone collapse assays, individual neurons were selected from two cover slips per condition; n is the total number of neurons analyzed per treatment. Cytotoxicity in slice cultures was assayed by lactate dehydrogenase (LDH) release to media and by cellular uptake of propidium iodide (PI) (Jourdi et al. 2005 (link)). Neuronal viability was assayed by Live/Dead Cytotoxicity Kit (Invitrogen, Carlsbad, CA) by computer-assisted image analysis of fluorescent images. Mitochondrial reductase was assayed by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) at 585 nm in undifferentiated PC12 cells (Mosmann 1983 (link)). For viability assays, n is the total number of hippocampal slices analyzed (LDH release and PI uptake) or the total number of cell culture wells analyzed per condition.
Immunoblotting. Mouse hippocampi were homogenized using a glass homogenizer in cold lysis buffer as described by Jourdi et al. (2005) (link). After sample preparation, 20 μg protein was electrophoresed on 10% sodium dodecyl sulfate polyacrylamide gels, followed by transfer to polyvinylidene fluoride (PVDF) membranes. The PVDF membranes were blocked with 5% bovine serum albumin for 1 hr and probed with primary antibodies overnight at 4°C: anti-GluA1 (glutamate receptor subunit 1; 1:3,000, rabbit; Abcam, Cambridge, MA), anti-GluA2 (1:2,000, rabbit; Millipore, Billerica, MA), anti-PSD95 (1:1,000, mouse; Abcam), anti-synaptophysin (1:5,000, mouse; Stressgene; Enzo, Plymouth Meeting, PA), and anti-β-III tubulin (loading control; 1:15,000, rabbit; Sigma), followed by incubation with secondary antibodies (1:10,000) conjugated with IRDye 680 (rabbit, LI-COR Biosciences, Lincoln, NE) and IRDye 800 (mouse, LI-COR). Immunofluorescence was detected by infrared imaging (Odyssey, LI-COR).
Quantitative polymerase chain reaction (qPCR). Total cellular RNA was extracted from cerebral cortex of nPM-exposed mice and rat primary glia (Tri Reagent; Sigma), and cDNA (2 μg RNA; Superscript III kit; Invitrogen) was analyzed by qPCR, with primers appropriate for mouse (in vivo) or rat (in vitro). Genes examined by qPCR were CD14, CD68, CD11b, CD11c, GFAP (glial fibrillary acidic protein), IFN-γ (interferon-γ), IL-1α, IL-1, IL-6, and TNFα. Data were normalized to β-actin.
Statistical analysis. Data are expressed as mean ± SE. The numbers of individual measurements (n) are described above and listed in the figure legends. Single and multiple comparisons used Student’s t-test (unpaired) and one-way analysis of variance (ANOVA)/Tukey’s honestly significant difference, with statistical significance defined as p < 0.05.
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Publication 2011
We obtained daily counts of hospital admissions for the period 2000–2006 from billing claims of enrollees in the U.S. Medicare system. Because the Medicare data analyzed for this study did not include individual identifiers, we did not obtain consent from individuals. This study was reviewed and exempted by the Institutional Review Board at the Johns Hopkins Bloomberg School of Public Health.
Each billing claim contains the date of service, disease classification using International Classification of Diseases, 9th Revision (ICD-9) codes (Centers for Disease Control and Prevention 2008 ), age, and county of residence. We considered two broad classes of outcomes based on ICD-9 codes: urgent or emergency cardiovascular admissions and urgent or emergency respiratory admissions. The classification of “urgent” and “emergency” is designated directly on each Medicare hospital admissions record. We excluded other classifications, such as “elective.” A recent study (Dominici et al. 2006 (link)) considered a number of different cardiovascular and respiratory outcomes. Because of the sparser sampling of the PM2.5 component data compared with the PM2.5 total mass data, to obtain sufficient statistical power we collapsed the data into two broad categories of hospital admissions: a) CVD, which includes heart failure (ICD-9 code 428), heart rhythm disturbances (426–427), cerebrovascular events (430–438), ischemic heart disease (410–414, 429), and peripheral vascular disease (440–448); and b) respiratory diseases, which include chronic obstructive pulmonary disease (490–492) and respiratory infection (464–466, 480–487). We excluded admissions for injuries and for external causes (800–849). By collapsing these health outcomes, we increased statistical power and obtained more stable estimates of risk at the cost of some specificity of the outcome.
We analyzed each outcome (respiratory or cardiovascular admissions) separately. We calculated the daily counts of hospitalizations by summing the hospital admissions for each disease of interest recorded as a primary diagnosis. To calculate daily hospitalization rates, we constructed a parallel time series of the numbers of individuals enrolled in Medicare that were at risk in each county on each day. We based the location of each hospital admission on the county of residence of the enrollee.
The U.S. EPA established the PM Speciation Trends Network (STN) to measure more than 50 PM2.5 chemical components, in addition to total mass. The STN includes > 50 national air monitoring stations (NAMS) and > 200 state and local air monitoring stations (SLAMS) (U.S. EPA 1999 ). Air pollution concentrations were typically measured on a 1-in-3–day schedule in the NAMS and on a 1-in-6–day schedule in the SLAMS. We removed suspect data and extreme values from the original monitor records; monitors with very little data were omitted altogether. Full details of the construction of the database can be found else-where (Bell et al. 2007 (link)). We also used PM2.5 total mass measurements from the U.S. EPA’s Air Quality System as in our previous analyses (Dominici et al. 2006 (link)). Of the 187 counties described in the Bell et al. (2007) (link) analysis, we restricted the present analysis to counties with general populations larger than 150,000 and with at least 100 observations on components of PM2.5. These requirements ensured that we would have enough data in a particular location to estimate an association between PM2.5 components and hospital admissions. The study population consisted of 12 million Medicare enrollees living in 119 urban counties in the United States (Figure 1).
We limited our analysis to the components making up a large fraction of the total PM2.5 mass or covarying with total mass (Bell et al. 2007 (link)): sulfate, nitrate, silicon, elemental carbon (EC), organic carbon matter (OCM), sodium ion, and ammonium ion. These seven components, in aggregate, constituted 83% of the total PM2.5 mass, whereas all other components individually contributed < 1%. We computed countywide averages for each of these components and for PM2.5 total mass by averaging the daily values from all monitors in a county. We adjusted organic carbon measurements for field blanks to estimate OCM. We used a standard approach such that OCM = k(OCm − OCb), where OCM represents organic carbon matter, OCm represents measured organic carbon, OCb represents organic carbon for blank filters, and k is the adjustment factor to account for non-carbon organic matter. We applied a k value of 1.4, as in a previous analysis (Bell et al. 2007 (link)). We obtained temperature and dew-point temperature data from the National Climatic Data Center on the Earth-Info CD database (EarthInfo 2006 ).
As a check on the consistency of the chemical component data, we first assessed whether three different PM2.5 indicators (four scenarios total) provided comparable estimates of the short-term associations of PM2.5 with cardiovascular and respiratory admissions: PM2.5 (1), PM2.5 measured by the national PM2.5 monitoring network for the period 1999–2006; PM2.5 (1a), PM2.5 (1) for the period 2000–2006 and including only days with available measurements for all the seven PM2.5 components from the STN; PM2.5 (2), PM2.5 measured by the STN for the period 2000–2006 and including only days with available measurements for all the seven PM2.5 components from the STN; and PM2.5 (3), PM2.5 estimated as the sum of the seven largest components of PM2.5 mass for the period 2000–2006. Significant differences between these estimates would raise uncertainty as to the recorded values of PM2.5 total mass and its components. The estimates obtained under the scenarios 1a, 2, and 3 use data on the same subset of days. Each of these measures of PM2.5 was available in all 119 counties.
We estimated the within-county monitor-to-monitor correlation for each of the seven PM2.5 components to obtain a measure of the spatial homogeneity of each component. For this calculation we used a subset of 12 counties that had more than one monitor (27 monitors total): Jefferson, Alabama; Washington, DC; Cook, Illinois; Jefferson, Kentucky; Wayne, Michigan; Bronx, New York; Cuyahoga, Ohio; Allegheny, Pennsylvania; Philadelphia, Pennsylvania; Providence, Rhode Island; King, Washington; and Kanawha, West Virginia. We computed correlations only if at least 90 paired observations were available between two monitors. We also estimated the median within-county correlations between the seven PM2.5 components, and the three measures of PM2.5 total mass by a) estimating the correlations between time series data for each pair of air pollutants within each county and b) taking the median of the estimated correlations across the 119 counties. As a separate measure of spatial homogeneity, we calculated, for each of the seven components and using all monitors, the distance at which the correlation between pairs of monitors was 0.5 on average.
We applied Bayesian hierarchical statistical models to estimate county-specific and national average associations between daily variation in the seven PM2.5 chemical components and daily variation in hospital admissions rates. This approach was originally developed for the National Morbidity, Mortality, and Air Pollution Study (Bell et al. 2004 (link); Samet et al. 2000 (link)) and subsequently extended (Dominici et al. 2006 (link)) to provide a consistent and unified methodology for analyzing data from multiple locations. We fit log-linear Poisson regression models with overdispersion to county-specific time-series data on hospital admissions and chemical components, accounting for potential confounders such as weather, day of the week, unobserved seasonal factors, and long-term trends. In each county-specific regression model, we included an indicator for the day of the week, a smooth function of time with 8 degrees of freedom (df) per calendar year to control for seasonality and long-term trends, a smooth function of current-day temperature (6 df), a smooth function of the 3-day running mean temperature (6 df), a smooth function of current-day dew-point temperature (3 df), and a smooth function of the 3-day running mean dew-point temperature (3 df). For all of the smooth functions we used a natural spline basis. We conducted a sensitivity analysis with respect to the smooth function of time to determine the degree to which risk estimates changed with varying levels of adjustment for smooth unmeasured confounders. Although other information about Medicare enrollees is available, such as sex and race, we excluded these factors from all models because they do not vary over time and should not play a role in our time series analysis.
For the exposure concentrations, we examined 0-, 1-, and 2-day lag concentrations because our previous work with PM2.5 total mass and hospital admissions showed little evidence of a strong association with admissions at a lag of ≥ 3 days (Dominici et al. 2006 (link)). We examined each lag separately because the 1-in-6–day sampling of the chemical component data from the STN prohibited the use of distributed lag models where all lags can be examined simultaneously.
For estimating the health effects of the PM2.5 components, we employed single-pollutant and multipollutant models. In single-pollutant models, we included each PM2.5 component in the regression model individually, without adjusting for any other chemical component (the model does adjust for other time-varying factors). In multipollutant models, we included PM2.5 components simultaneously to obtain estimates of the regression coefficients for each component adjusted for the other components. Ammonium was excluded from models that included sulfate and nitrate because of the high correlation among these three components. We included ammonium in a separate multipollutant model that did not include sulfate or nitrate but included the remaining four components.
We combined the county-specific risk estimates to form a national average using a Bayesian hierarchical model. In the single-pollutant models, we combined the log-relative risks separately for each pollutant using TLNise two-level normal independent sampling estimation software (Everson and Morris 2000 ). For the multiple-pollutant models, the risks were treated as a vector for each county and combined using a multivariate normal hierarchical model. We used Markov chain Monte Carlo methods to obtain the posterior distribution of the national average component effects. We assessed statistical significance by the posterior probability that the national average relative risk for a component was greater than zero. Values of the posterior probability > 0.95 were considered statistically significant (Dominici et al. 2006 (link); Peng et al. 2008 (link)).
We evaluated whether the relative risks of each PM2.5 component in a multipollutant model were equal. In this analysis, the risks represent the percent increase in admissions associated with a 1-μg/m3 increase in each PM2.5 component in a multipollutant model. We assessed the evidence against equal component risks using a chi-square statistic applied to the national average estimates. We also estimated the posterior probability that the coefficient for a particular component was greater than the mean of the coefficients for the other components.
For statistical calculations we used R statistical software, version 2.7.0 (R Foundation for Statistical Computing, Vienna, Austria).
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Publication 2009
Agarose-normal melting (molecular biology grade-MB), agarose-low melting (MB), sodium chloride (analytical reagent grade-AR), potassium chloride (AR), disodium hydrogen phosphate (AR), potassium dihydrogen phosphate (AR), disodium ethylenediaminetetraacetic acid (disodium EDTA) (AR), tris (AR), sodium hydroxide (AR), sodium dodecyl sulphate / sodium lauryl sarcosinate (AR), tritron X 100 (MB), trichloro acetic acid, zinc sulphate (AR), glycerol (AR), sodium carbonate (AR), silver nitrate (AR), ammonium nitrate (AR), silicotungstic acid (AR), formaldehyde (AR) and lymphocyte separation media (Ficoll/ Histopaque 1077 [Sigma]/ HiSep [Himeda]).
Publication 2011
ammonium nitrate dodecyl sulfate Edetic Acid Ficoll Formaldehyde Glycerin histopaque Lymphocyte Potassium Chloride potassium phosphate, monobasic Sepharose silicotungstic acid Silver Nitrate sodium carbonate Sodium Chloride Sodium Hydroxide sodium phosphate, dibasic Sodium Sarcosinate Trichloroacetic Acid Tromethamine Zinc Sulfate
Both Drylands and Scotland. For this study, we used six variables that were available for the two data sets: potential net nitrogen (N) mineralization, nitrate, ammonium, DNA concentration, available phosphorus (P) and plant productivity. Overall, these variables constitute good proxies of processes driving nutrient cycling, biological productivity, and the build-up of nutrient pools25 (link)54 . In particular, N and P are the nutrients that most frequently limit the primary production in terrestrial ecosystems35 . For example, ammonium and nitrate are important N sources for both microorganisms and plants35 . In addition, potential net N mineralization is a key processes within the N cycle transforming organic into inorganic N. Inorganic P is the main P source for plants and microorganisms35 , and its availability is linked to the desorption and dissolution (for example, through oxalate exudates) of P from soil minerals, and to a lesser extent, to the decomposition of organic matter35 . In addition, DNA concentration has been recently used as a proxy of surface soil biomass55 56 (link). In the Scotland data set, this variable is strongly related to the glucose substrate-induced respiration (Spearman's ρ=0.70; P<0.001), a common proxy of soil microbial biomass57 (link). In addition, as a molecule rich in N and P, DNA could be an important source of microbial nutrition58 (link). Finally, plant productivity is a key ecosystem process that sustains human welfare, support belowground ecosystem functionality17 (link)59 , and plays major roles in the global carbon cycle17 (link)59 .
Extractable ammonium and nitrate were obtained from K2SO4 and KCl extracts in the Drylands and Scotland data sets, respectively. The potential net N mineralization rate was estimated as the difference between initial and final inorganic N (sum of ammonium and nitrate) before and after incubation under potential conditions60 in both data sets. Soil phosphorus was estimated from sodium bicarbonate61 and acid ammonium oxalate62 extracts in the Drylands and Scotland data sets, respectively. In both cases, the concentration of DNA was estimated with a Nanodrop 2000 UV–vis spectrophotometer (Wilmington, USA) after DNA extraction as described above. Finally, we used the Normalized Difference Vegetation Index (NDVI) as our proxy of plant productivity59 . These data were obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard NASA's Terra satellites (http://daac.ornl.gov/index.shtml). NDVI provides a global measure of the ‘greenness' of vegetation across Earth's landscapes for a given composite period, and thus acts as a proxy of photosynthetic activity and large-scale vegetation distribution59 . Here, we used averaged values obtained from NDVI values for the months before, during and after sampling at each of the surveyed plots. This index was calculated in the same way for both the Drylands and Scotland data sets.
Because of the huge differences in bulk density among soil samples in the Scotland data set (0.06–1.35 g cm−3), all the soil functions were corrected to account for the different bulk density values observed in each of the surveyed plots. Bulk density information was not available for the Drylands data set, but we do not expect vast differences in bulk density among dryland ecosystems due to the mineral nature of their soils. In fact, in a subset of our data set where bulk density was available, multifunctionality estimates corrected by bulk density were highly correlated with those non-corrected (ρ=0.763; P<0.001; n=25). In the Drylands data set, samples were collected in open areas and under the main vegetation; thus, all the soil variables in this data set were averaged to obtain site-level estimates by using the mean values observed in bare ground and vegetated areas, weighted by their respective cover at each site25 (link).
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Publication 2016
Animals and treatment: Adult male Sprague–Dawley rats (225–250 g,
n=36) were purchased from Samtako Animal Breeding Center (Osan, Korea)
and were randomly divided into a sham-operated group, vehicle-treated group and
resveratrol-treated group (n=12 per group). All procedures for animal use
were approved by the Institutional Animal Care and Use Committee of Gyeongsang National
University (GNU-130723-R0050). Experimental animals were housed at 18–22°C under a 12 hr
light/12 hr dark cycle and had free access to a pellet diet and tap water. Resveratrol (30
mg/kg, Sigma, St. Louis, MO, U.S.A.) was dissolved in 2% dimethyl sulfoxide (DMSO) as
vehicle and was injected intraperitoneally as described previously [19 (link)]. Resveratrol or vehicle was
injected immediately after middle cerebral artery occlusion (MCAO).
Middle cerebral artery occlusion: Rats were anesthetized with sodium
pentobarbital (100 mg/kg), and MCAO was carried out as described previously [21 (link)]. Briefly, the right common
carotid artery, external carotid and internal carotid were exposed through a midline cut. A
4/0 nylon filament with a heated rounded tip was inserted from the external carotid artery
into the internal carotid artery and advanced until the rounded tip occluded the origin of
the middle cerebral artery. Sham-operated animals were subjected to the same procedure,
except for insertion of the filament. At 24 hr after the onset of permanent occlusion,
animals were decapitated, and the right cerebral cortex was isolated.
2-Dimensional gel electrophoresis: Proteomic analysis was carried out as
our previously described method [32 (link)].
Proteins were extracted from the right cerebral cortex by homogenization in buffer solution
(8 M urea, 4% CHAPS, ampholytes and 40 mM Tris–HCl) followed by centrifugation at 16,000 g.
Protein concentration was determined by the Bradford method (Bio-Rad, Hercules, CA, U.S.A.)
according to the manufacturer’s protocol. Immobilized pH gradients (IPG, pH 4–7 and pH 6–9,
17 cm, Bio-Rad) were incubated in rehydration buffer (8 M urea, 2% CHAPS, 20 mM DTT, 0.5%
IPG buffer and bromophenol blue) for 13 hr at room temperature. Assayed protein samples were
loaded on IPG strips (pH 4–7 and 6–9), and isoelectric focusing (IEF) was performed as
follows: 200 V (1 hr), 500 V (1 hr), 1,000 V to 8,000 V (30 min) and 8,000 V (5 hr) using an
IPG phore unit (GE Healthcare, Uppsala, Sweden). Strips were incubated with equilibration
buffer (6 M urea, 30% glycerol, 2% sodium dodecyl sulfate, 50 mM Tris-HCl and bromophenol
blue) and loaded on gradient gels (7.5–17.5%), followed by second-dimension electrophoresis
using Protein-II XI electrophoresis equipment (Bio-Rad). Settings were 5 mA per gel for 2 hr
followed by 10 mA per gel at 10°C.
Silver staining, image analysis and protein identification: Silver
staining was performed as follows: fixation (12% acetic acid and 50% methanol) for 2 hr,
washing with 50% ethanol and then treatment with 0.2% sodium thiosulfate. Gels were washed
with deionized water and stained in silver solution (0.2% silver nitrate). Gels were
developed in 0.2% sodium carbonate solution, and gel images were collected using an Agfar
ARCUS 1200™ scanner (Agfar-Gevaert, Mortsel, Belgium). PDQuest 2-D analysis software
(Bio-Rad) was used to analyze differences in protein spots among the different groups.
Differentially expressed protein spots were excised and destained. Gel particles were
digested in trypsin-containing buffer, and the extracted peptides were analyzed using a
Voyager-DETM STR biospectrometry workstation (Applied Biosystem, Forster City, CA, U.S.A.)
for peptide mass fingerprinting. Database searches were carried out using MS-Fit and
ProFound software. SWISS-PROT and NCBI were used as protein sequence databases.
Western blot analysis: Western blot analysis was carried out as our
previously described method [13 (link),
32 (link)]. Right cerebral cortex was dissolved in lysis
buffer (1 M Tris–HCl, 5 M sodium chloride, 0.5% sodium deoxycholate, 10% sodium dodecyl
sulfate, 1% sodium azide and 10% NP-40). Protein concentration was determined using a
bicinchoninic acid (BCA) kit (Pierce, Rockford, IL, U.S.A.) according to the manufacturer’s
protocol. Equal volumes of protein (30 µg per sample) were electrophoresed
on 10% SDS-PAGE gels, and the proteins were transferred to poly-vinylidene fluoride (PVDF)
membranes (Millipore, Billerica, MA, U.S.A.). To minimize nonspecific binding, membranes
were blocked with skim milk for 1 hr at room temperature. PVDF membranes were washed in
Tris-buffered saline containing 0.1% Tween-20 (TBST) and then incubated with antibodies
against the following proteins: peroxiredoxin-5, isocitrate dehydrogenase [NAD+],
apolipoprotein A-I, ubiquitin carboxy terminal hydrolase L1, collapsing response mediator
protein 2 and actin (diluted 1:1,000, Cell Signaling Technology, Beverly, MA, U.S.A.).
Membranes were sequentially reacted with secondary antibody (1:5,000, Pierce). ECL Western
blot analysis system (Amersham Pharmacia Biotech, Piscataway, NJ, U.S.A.) was used for
detection according to the manufacturer’s protocol. The intensity analysis was carried out
using SigmaGel 1.0 (Jandel Scientific, San Rafael, CA, U.S.A.) and SigmaPlot 4.0 (SPSS Inc.,
Point Richmond, CA, U.S.A.).
Reverse transverse-PCR amplification: Total RNA from right cerebral
cortices was extracted using Trizol reagent (Invitrogen, Carlsbad, CA, U.S.A.) following the
manufacturer’s protocol. For reverse transcription, we used Superscript III reverse
transcriptase from Invitrogen following the manufacturer’s manuals. The primer sequences are
represented in Table 1Sequence of the primers used for PCR amplification
GenePrimer sequences (F, Forward; R, Reverse)Product size (bp)
Peroxiredoxin-5F:5′-GGAGTCCCTGGGGCATTTAC-3′392
R:5′-GACATTCTGGTCAGGGCCTC-3′
NAD (+)-dependent isocitrate
dehydrogenase
F:5′-AAAAATCCATGGCGGTTCTGTG-3′404
R:5′-GGTCCCCATAGGCGTGTCG-3′
Apolipoprotein A-IF:5′-TGTTGGTCGCCTACAGGAAC-3′223
R:5′- TCGCGTTTTTGTGAAGCTCG-3′
Ubiquitin carboxyl terminal hydrolase
isozyme L1 (UCH-L1)
F:5′-CTAGGGCTGGAGGAGGAGAC-3′296
R:5′-TTGTCCCCTGAAGAGAGAGC-3′
Collapsing response mediator protein 2
(CRMP-2)
F:5′-TGGTTTCAGCTTGTCTGGTG-3′454
R:5′ -TGACAGGAAGGTGCTGACTG-3′
β-actinF:5′-GGGTCAGAAGGACTCCTACG-3′238
R:5′- TTTCACTGCGGCTGATGTAG-3′
. The amplification PCR reaction consisted of an initial denaturation at 94°C
for 5 min, followed by 35 cycles from 94°C for 30 sec, annealing at 54°C for 30 sec and an
extension at 72°C for 1 min and a final extension for 10 min at 72°C. RT-PCR products were
separated on a 1% agarose gel and visualized under UV light. The intensity analysis of
RT-PCR products was carried out using SigmaGel 1.0 (Jandel Scientific) and SigmaPlot 4.0
(SPSS Inc.).
Data analysis: All data are expressed as means ± SEM. The results for each
group were compared by one-way analysis of variance (ANOVA) followed by Student’s
t-test. The difference for comparison was considered significant at
P<0.05.
Publication 2014

Most recents protocols related to «Sodium nitrate»

Samples of sodium nitrate supported on magnesium oxide were synthesized using an equal volume impregnation method. The commercial magnesium oxide was submerged in an aqueous solution of sodium nitrate (Sinopharm Chemical Reagent Co., Ltd, AR) with a calculated amount equivalent to 1, 5, 10, 15 wt% of sodium oxide, respectively. The sample was ultrasonically stood at room temperature for 4 hours and then dried in an oven at 120 °C overnight to remove excess water. The resultant material was finally treated with temperature-programmed calcination to 700 °C for 6 h in a muffle furnace in the presence of air and the samples were denoted “1-Na/MgO”, “5-Na/MgO”, “10-Na/MgO”, and “15-Na/MgO”.
Publication 2024
Standard chemiluminescence assays for measuring nitrite and nitrate contents were performed according to previously published protocols [38 (link),39 (link)]. Blood was drawn from the femoral artery into vacutainer tubes containing sodium citrate (Becton Dickinson, Franklin Lakes, NJ, USA) and was immediately centrifuged to obtain platelet-free plasma using a PDGTM platelet centrifuge (Bio/Data, Horsham, PA, USA). Tissue samples were collected and proteins from all samples were precipitated by adding methanol (dilution 1:1), followed by subsequent centrifugation at 11,000× g for 15 min at 4 °C. Supernatants were used to determine nitrite and nitrate contents using chemiluminescence (Sievers 280i Nitric Oxide Analyzer, GE Analytical Instruments, Boulder, CO, USA).
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Publication 2024
Redistilled solvents and Milli-Q water (>18
MΩ cm) were used for substrate cleaning and preparation of solutions.
An FEP (30 μm, DAIKIN) film was used for triboelectrification
with liquid droplets. Sodium chloride (99.5%), sodium iodide (99.5%),
sodium nitrate (99%), sodium bicarbonate (99.5%), sodium carbonate
(99.5%), sodium sulfite (98%), sodium sulfate (99%), magnesium sulfate
(99%), potassium chloride (99.5%), potassium ferricyanide (99.5%),
calcium chloride (97%), chromic nitrate (99%), manganese(II) chloride
(99%), manganese(II) sulfate (99%), ferric nitrate (98.5%), nickel(II)
chloride (99%), copper sulfate (99%), copper(II) nitrate (99%), zinc
nitrate (99%), zinc acetate (98%), hydrochloric acid (37%), sulfuric
acid (98%), nitric acid (68%), potassium hydroxide (99.9%), and sodium
hydroxide (97%) were purchased from Macklin. Ethanol (99.7%) and acetone
(99.5%) were obtained from Yong Da Chemical.
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Publication 2024
Cobalt nitrate (CoNO3.6H2O), aluminum nitrate (AlNO3.9H2O), Zinc nitrate (ZnNO3.6H2O) bi-distilled water, urea, citric acid, trisodium salt, butyl alcohol, sodium hydroxide (NaOH), sodium nitrate (NaNO3), tween 20, sodium glycocholate, and oleic acid were purchased from Alfa Aesar, Germany. Essential oils of a commercially available jasmine oil blend consisting of Jasmine oil and Azores jasmine (J. sambac and J. azoricum, respectively) (Oleaceae) and peppermint (M. arvensis) (Lamiaceae) were bought from “Cap Pharm” EL CAPTAIN Company for extracting natural oils, plants, and cosmetics (El Obor, Cairo, Egypt); we would refer to the used oils as AJ and PP, respectively. All chemicals and essential oils were used without further purification or distillation.
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Publication 2024
For the synthesis of the catalyst precursors the following commercially available chemicals were used without further purification: Cobalt (II) nitrate hexahydrate (≥98% p.a., ACS, Carl Roth GmbH & Co. KG), iron (II) sulfate heptahydrate (≥99.5% p.a., ACS, Carl Roth GmbH & Co. KG), iron (III) nitrate nonahydrate (≥98% p.a., ACS, Alfa Aesar GmbH), magnesium nitrate hexahydrate (≥98%, ACS, Alfa Aesar GmbH), sodium carbonate (p.a., AppliChem GmbH) and sodium hydroxide (≥99%, VWR International BVBA).
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Publication 2024

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Sodium hydroxide is a chemical compound with the formula NaOH. It is a white, odorless, crystalline solid that is highly soluble in water and is a strong base. It is commonly used in various laboratory applications as a reagent.
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Silver nitrate is a chemical compound with the formula AgNO3. It is a colorless, water-soluble salt that is used in various laboratory applications.
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Hydrochloric acid is a commonly used laboratory reagent. It is a clear, colorless, and highly corrosive liquid with a pungent odor. Hydrochloric acid is an aqueous solution of hydrogen chloride gas.
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Sodium borohydride is a reducing agent commonly used in organic synthesis and analytical chemistry. It is a white, crystalline solid that reacts with water to produce hydrogen gas. Sodium borohydride is frequently employed in the reduction of carbonyl compounds, such as aldehydes and ketones, to alcohols. Its primary function is to facilitate chemical transformations in a laboratory setting.
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Sodium nitrate is an inorganic compound with the chemical formula NaNO3. It is a crystalline solid that is commonly used as a laboratory reagent and in various industrial applications.
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Ethanol is a clear, colorless liquid chemical compound commonly used in laboratory settings. It is a key component in various scientific applications, serving as a solvent, disinfectant, and fuel source. Ethanol has a molecular formula of C2H6O and a range of industrial and research uses.
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Methanol is a clear, colorless, and flammable liquid that is widely used in various industrial and laboratory applications. It serves as a solvent, fuel, and chemical intermediate. Methanol has a simple chemical formula of CH3OH and a boiling point of 64.7°C. It is a versatile compound that is widely used in the production of other chemicals, as well as in the fuel industry.
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NaCl is a chemical compound commonly known as sodium chloride. It is a white, crystalline solid that is widely used in various industries, including pharmaceutical and laboratory settings. NaCl's core function is to serve as a basic, inorganic salt that can be used for a variety of applications in the lab environment.
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Ascorbic acid is a chemical compound commonly known as Vitamin C. It is a water-soluble vitamin that plays a role in various physiological processes. As a laboratory product, ascorbic acid is used as a reducing agent, antioxidant, and pH regulator in various applications.
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L-ascorbic acid is a chemical compound commonly known as vitamin C. It is a white, crystalline solid that is soluble in water and has a slight acidic taste. L-ascorbic acid is an essential nutrient required for various metabolic processes in the body and acts as an antioxidant, protecting cells from damage caused by free radicals.

More about "Sodium nitrate"

Sodium nitrate, also known as Chile saltpeter or soda niter, is an inorganic chemical compound with the chemical formula NaNO3.
It is a colorless, odorless crystalline solid that is widely used in various industrial and agricultural applications.
Sodium nitrate is commonly used as a food preservative, oxidizing agent, and in the production of fertilizers, explosives, and pyrotechnics.
It occurs naturally in arid regions, such as the Atacama Desert in Chile, and can also be synthetically produced.
Some key properties and uses of sodium nitrate include: - Food Preservation: Sodium nitrate is used as a food additive to prevent bacterial growth, preserve color, and enhance flavor in processed meats, cheeses, and other food products. - Oxidizing Agent: Sodium nitrate is used as an oxidizing agent in the production of various chemicals, including nitric acid, sodium perchlorate, and sodium hydroxide. - Fertilizer: Sodium nitrate is a source of nitrogen, making it a valuable fertilizer for agricultural applications. - Explosives and Pyrotechnics: Sodium nitrate is a key ingredient in the production of explosives, propellants, and pyrotechnic devices. - Other Uses: Sodium nitrate is also used in the production of glass, ceramics, and enamels, as well as in the treatment of metals and in the pharmaceutical industry.
Related compounds such as sodium hydroxide, silver nitrate, hydrochloric acid, sodium borohydride, ethanol, methanol, NaCl, and ascorbic acid (L-ascorbic acid) may also play a role in the production, processing, or applications of sodium nitrate.
Understanding the properties, uses, and related compounds of sodium nitrate is crucial for researchers and professionals working in fields such as chemistry, materials science, agriculture, and industrial manufacturing.