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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)

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Most cited protocols related to «(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)»

The MAX statistic is a measure utilizing multiple data encodings to maximize the power for finding a genetic effect. Sladek et al.1 (link) originally utilized this statistic with a combination of the additive, dominant, and recessive encodings in logistic regression. We have extended the statistic to include the genotypic encoding of the chi-square test, which is shown in our results to be uncorrelated with logistic regression. To implement the PLATO_MAX approach1 (link) and test its efficacy, a simulation study was performed. First, 100 datasets with 1000 cases and 1000 controls were simulated to find the power of the method. Three genetic effects with an odds ratio of 1.5 – one additive model, one recessive model, and one dominant model – were embedded in these datasets. To find the MAX statistic for each SNP, four filters – LOGISTICREGRESS (ADD/D/R) and CHISQUARE (G) – were run and the minimum p-value between the four was kept as the best solution. These four filters represented one filter from each of the four filter classes identified (as described in the results below). We selected one filter per class based on ease of use and interpretation. In order to deal with multiple testing issues, a set of 1000 permutations was performed, building a null distribution for each SNP. Here, the disease status was randomized to create 1000 null datasets where the genotype matrix was held constant but the association between genotype and phenotype was removed. The full PLATO_MAX analysis was performed on each null dataset and the lowest p-value was obtained from each dataset and collected in the empirical null distribution. The original lowest p-value was then compared to the permutation null distribution to find a corrected p-value. The power was calculated for each of the three effects at α=0.01 and 0.05 levels as the number of times out of the 100 datasets that the SNP in question was found to be significant after permutation testing. The false positive rate was calculated as the average number of incorrect loci found to be significant for each dataset divided by the number of SNPs in the dataset. We also investigated the Type 1 error rate of the PLATO_MAX approach by simulating 1000 datasets with no genetic effect. The PLATO_MAX approach was then run with permutation and the number of times which SNPs were found to be significant with the null model was examined.
Publication 2010
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) ARID1A protein, human Genotype Phenotype Single Nucleotide Polymorphism
The genomeSIMLA software 9 (link),10 (link) was used to conduct the data simulations. Simulation was performed by first generating a population of 100,000 chromosomes containing 1000 bi-allelic polymorphisms. For each chromosome, all polymorphisms with exception of the disease polymorphism(s) were initialized randomly with respect to allele frequency within a range of minor allele frequency between 10% and 50%. We conducted a two-stage simulation study. In the initial phase of the simulation study, the goal was to determine the redundancy among the PLATO filters. For these simulations, the disease minor allele frequency was fixed at 25%. In the second phase simulations, the goal was to evaluate the approach whereby the correlated filters were clustered into filter classes and the MAX statistic was evaluated. Here, the disease polymorphisms were allowed to vary freely in allele frequency. Once the population of chromosomes was initialized, a penetrance function describing the size of the disease effect and the location of the disease locus was applied and random sampling theory was utilized in order to choose datasets of 1000 cases and 1000 controls. In all simulations for the estimation of power, 100 datasets were used; however, to test the Type 1 error rate of the PLATO_MAX approach, 1000 datasets were simulated.
A number of different disease models were simulated for the different elements of this study. Table 1 lists the different genetic models simulated. First, to determine the agreement between filters, single-locus additive, dominant, and recessive genetic effects with an odds ratio of 1.2, 1.5, 1.8, and 2.0 were simulated independently. In addition, a null model with no genetic effect was simulated separately. The simulated data used to further subset these filters into filter classes included six genetic effects: 2 each of additive, dominant, and recessive effects with one effect of each pair having an odds ratio of 1.2 and the other an odds ratio of 1.5. Finally, the data simulated to test the PLATO_MAX approach was evaluated using three effects, each exhibiting an odds ratio of 1.5 under additive, dominant, and recessive models.
Publication 2010
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Alleles Chromosomes Genes, Recessive Genetic Polymorphism Reproduction
Genotyping was performed at the Center for Genotyping and Analysis at the Broad Institute (for two eMERGE sites) and the Center for Inherited Disease Research at Johns Hopkins University (for the remaining three eMERGE sites) using the Human660W-Quadv1_A genotyping platform, consisting of 561,490 SNPs and 95,876 intensity-only probes on a total of 13,835 EMR-identified European-American subjects across each of the five eMERGE sites. Genotypes were merged across the five sites and cleaned using the QC pipeline developed by the eMERGE Genomics Working Group39 . This process includes evaluation of sample and marker call rate, gender mismatch and anomalies, duplicate and HapMap concordance, batch effects, Hardy-Weinberg equilibrium (HWE), sample relatedness and population stratification (using STRUCTURE40 (link) and EIGENSTRAT41 (link)). Relatedness was determined based on identity by descent (IBD) estimates generated from the genome-wide genotype data in PLINK.
522,164 SNPs passed the following QC criteria: SNP call rate >95%, sample call rate >99%, minor allele frequency >0.01, 99.99% concordance rate in duplicates, unrelated samples only, and individuals of European-descent only (based on STRUCTURE analysis of >90% probability of being in the CEU cluster, which was derived from Utah residents with ancestry from northern and western Europe). We flagged all markers with HWE P < 1 × 10−4 for further evaluation post-analysis using standard criteria. Finally, we selected SNPs that were also in the NHGRI Catalog (as of April 17, 2012), which yielded 3,144 SNPs (at any P-value); these were used for PheWAS analysis (described below). The QC and data analysis were performed using a combination of PLINK, PLATO and the R statistical package.
Publication 2013
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Europeans Genome Genotype HapMap Hereditary Diseases MLL protein, human Single Nucleotide Polymorphism
The cells were grown in their respective medium to the needed OD. Basic medium (BM) for S. aureus consisted of Soy Peptone (10 g; Plato), Yeast Extract (5 g; Deutsche Hefewerke), NaCl (5 g; Carl-Roth), Glucose (1 g; Carl Roth) and K2HPO4 (1 g; Applichem). Deionized water was added to a final volume of 1 liter and pH was adjust to 7.2. LB medium for E. coli consisted of Peptone (10 g; Plato), Yeast Extract (5 g; Deutsche Hefewerke) and NaCl (5 g; Carl Roth). Deionized water was added to a final volume of 1 liter and pH was adjust to 7.2.
Publication 2014
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Cells Escherichia coli Glucose Peptones potassium phosphate, dibasic Sodium Chloride Yeasts
The primary outcome of the PRINCE trial was the proportion of patients with high platelet reactivity at 90 days. High platelet reactivity was defined as a P2Y12 reaction unit of more than 208 measured using the VerifyNow P2Y12 assay. Prespecified secondary outcomes included high platelet reactivity at 90 days (seven days either way) in patients carrying genetic variants that would affect clopidogrel metabolism; any stroke (ischaemic or haemorrhagic); and composite clinical vascular events (ischaemic/haemorrhagic stroke, transient ischaemic attack, myocardial infarction, or vascular death) at 90 days (seven days either way), six months, and one year. Each reported composite clinical vascular event and safety outcome was independently adjudicated by two members (KD and Jimei Li) of the clinical event adjudication committee, who were blinded to the treatment group assignments. All discrepancies were reviewed by all five members of the committee and resolved by consensus.
The primary safety outcome was major bleeding, which was defined as that in the PLATO study classification of haemorrhagic events: fatal or life threatening bleed, major bleed, and other (supplementary appendix, PLATO bleeding classification). Secondary safety outcomes included the incidence of intracranial bleeding; dyspnoea events; and mortality at 90 days (seven days either way), six months, and one year.
Publication 2019
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Biological Assay Blood Platelets Blood Vessel Cerebrovascular Accident Clopidogrel Dyspnea Genetic Diversity Hemorrhagic Stroke Metabolism Myocardial Infarction Patients Safety Transient Ischemic Attack

Most recents protocols related to «(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)»

To unpack some of the motivations behind Landi’s provocative approach, it is necessary to offer an analysis of the philosophical background of his works, especially the Iatrologia and the Opuscula as illustrated by three private letters9 addressed to him by the nobleman Sebastiano Erizzo (1525–1585), one of Landi’s pupils in Padua during the period 1543–1545. Erizzo’s letters address certain critiques that Landi had made of his pupil’s manuscript, Dell’instrumento et via inventrice degli antichi (“The Instrument and Method of Invention of the Ancients”), eventually published by Erizzo in 1554. Both in his letters and works, Erizzo offers a glimpse into Landi’s approach to method and the influence it had on his pupils. In the first letter (15 November 1551), Erizzo addresses Landi’s criticism that the title is unclear and should be revised to read Della prestantia dell’istrumento divisivo or Dell’eccellenza del metodo divisivo (“On the Efficacy/Excellence of the Divisive Method”). Erizzo praises his master for having introduced him to the importance of division as a method in the arts. Landi had discussed the importance of division as an instrument of discovery in his Iatrologia, while the Opuscula had demonstrated how this method could be used to present complex issues such as the nature of motion and time.10 As we shall see, however, Landi’s use of division was conceived to be used in conjunction with syllogism, not as a substitute for it, which explains why he criticised his pupil for the bold title of his forthcoming book. To defend himself against Landi’s criticism, Erizzo quotes passages from Plato, Aristotle, and Proclus, wherein division is praised for its capacity to lead to the discovery of new truths. In the second letter to Landi (dated 4 March 1552), Erizzo refers to Landi’s manuscript treatise “On Methods and Orders” which discussed the efficacy of division in detail and which Erizzo had consulted. Erizzo praises Landi’s hesitancy in publishing it, because the work would have been met with opposition from poorly-qualified “envious people.”11 Whether or not such a manuscript was in fact part of the promised work on scholastic controversies remains unclear. Landi’s propensity to use division as a method and the extent of his influence on Erizzo’s work is visible in the fact that Erizzo dedicated Dell’instrumento to Landi who, in Erizzo’s words, had first introduced the possibility of thinking of “division” and “order” as methods of equal value to syllogism and apodictic demonstration.
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Publication 2023
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Motivation Pupil
AlphaFold2 (https://alphafold.ebi.ac.uk/) was run using the ColabFold notebook (https://github.com/sokrypton/ColabFold) using version 2.1 on default settings. Multisequence alignment of Fig. 2A was performed in SeaView version 5.0.4 (www.mybiosoftware.com/seaview-4-2-12-sequence-alignment-phylogenetic-tree-building.html; RRID: SCR_015059) (59 (link)). The ATG9 HDIR (828–839)–fused ATG101 (1–198):ATG13 (1–197) complex was concentrated to 6 mg/ml in the ITC buffer. Crystallization was carried out by sitting drop vapor diffusion using an automated liquid handling system (Mosquito, TTP Labtech, UK) at 288 K in 96-well plates. The protein solution was mixed with the reservoir buffer composed of 0.1 M Hepes (pH 7.5), 0.2 M NaCl, and 12% PEG8000 (polyethylene glycol, molecular weight 800) with a ratio of 1:1. The crystal was obtained in 2 to 4 days. Crystals were cryoprotected in 28% glycerol/reservoir buffer and frozen in liquid N2. The protocol for purification of the ATG9 HDIR-ATG101:ATG13HORMA complex and crystallization has been deposited (dx.doi.org/10.17504/protocols.io.cc55sy86).
Native data were collected from a single frozen crystal using a Dectris Pilatus 6M detector at beamline 12-2, Stanford Synchrotron Radiation Lightsource (SSRL). All data were processed and scaled using X-ray Detector Software 4.0 (https://xds.mr.mpg.de/; RRID: SCR_015652) (60 (link)). The crystal diffracted to 2.4-Å resolution and belonged to space group P212121 with unit cell dimensions a = 45.453 Å, b = 139.86 Å, c = 147.595 Å, and α = β = γ = 90°. A molecular replacement solution was found using partial structures derived from the ATG101:ATG13 HORMA apo structure (PDB: 5C50) as a search model with Phenix (version 1.20.1-4487) (61 (link)). Model building and refinement were carried out using Coot 0.9.6 EL (www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/; RRID: SCR_014222) (62 (link)) and Phenix version 1.20.1-4487 (www.phenix-online.org/; RRID: SCR_0142294) (61 (link)). Structural figures were generated with PyMOL, version 2.5 (https://pymol.org/; RRID: SCR_000305) (63 ) or UCSF Chimera, version 1.16 (http://plato.cgl.ucsf.edu/chimera/; RRID: SCR_004097) (64 (link)).
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Publication 2023
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Buffers Cells Chimera Crystallization Culicidae Diffusion Freezing Glycerin HEPES polyethylene glycol 8000 Polyethylene Glycols Proteins Radiation Radiography Sequence Alignment Sodium Chloride
The effectiveness of the treatment was assessed based on the incidence of stroke (ischemic or hemorrhagic) or composite vascular events (hemorrhagic or ischemic stroke, transient ischemic attack, myocardial infarction, or vascular death) within a 90-day period. Safety outcomes were identified according to the PLATO standard for bleeding events after 90 days [16 (link)].
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Publication 2023
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Blood Vessel Cerebrovascular Accident Myocardial Infarction Safety Stroke, Ischemic Transient Ischemic Attack
After identifying specific virtues in the training program, we looked for themes to categorize them. It appeared helpful to use well known categories, already available in virtue ethical theory. We distinguish between cardinal, intellectual, and moral virtues. This classification dates back to Ancient Greek philosophers such as Plato and Aristotle [38 ]. Some of the virtues identified did not fit into any of these classic categories. We labelled them as professional virtues because these virtues resemble qualities deemed laudable in the profession and practice of the ENT surgeon. See Table 1 for more information about these virtue categories which are based on literature [9 38 39 (link)]. Although such categorization is also widely debated, these four categories served the purpose of providing an insightful overview. Furthermore, any categorization can lead to discussion, as it is almost never completely exhaustive.
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Publication 2023
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Surgeons Training Programs
Bitter gourd raw material processing. Fresh bitter gourd (Momordica charantia) procured locally in (Mpumalanga Province, South Africa) was sorted, washed thoroughly in running water to remove adhering foreign materials, cut on both ends, and thereafter blended (Milex, Sandton, South Africa). Grapes procured locally at Food Lovers Market were washed and blended using a juicer (Milex, Sandton, South Africa).
Response surface methodology design of experiments (DoE). The suitable ranges for inputs (Table 1 used in the DoE were obtained from the literature and subsequent preliminary experiments. Design-Expert software version 11.0.0 (Stat-Ease Inc., Minneapolis, MN, USA) was used to generate 20 experimental runs (Table 1).
Blended bitter gourd and grapes were mixed at different concentrations and monitored for pH, alcohol, total titratable acidity (TTA), and total soluble solids (TSS), and we concluded that, at a concentration of 35% bitter gourd and 65% grapes, the ratio would be suitable for enough sugar content for fermentation to take place as well as enough bitter gourd juice for its physiochemical properties to be investigated. The mixture was subsequently inoculated with Saccharomyces cerevisiae and Metschnikowia pulcherimma (Anchor Yeast, Lallemand, South Africa). Experiments were conducted in triplicates, and samples were withdrawn after each experimental run to test for alcohol (°P), pH, total titratable acidity (TTA) (% lactic acid), and total soluble solids (TSS) (g/100 g).
Determination of alcohol. A semi-quantification of alcohol content in the beverage was determined using a digital refractometer for brewing (Hanna Instruments (Pty) Ltd., Johannesburg, South Africa) by placing 1 mL of the beverage on the sample well and observing the reading. The Plato (°P) readings were recorded afterwards.
Determination of pH. A pH meter (Hanna Instruments (Pty) Ltd., Johannesburg, South Africa) was first calibrated with standard buffers of pH 4 and 7 and used to measure the pH of respective samples.
Determination of total titratable acidity (TTA). TTA was determined using the AACC Method 02-31.011. This entailed dissolving 10 g of the sample in 100 mL of distilled water. The solution was mixed, and a drop of 1% phenolphthalein was added. The prepared solution was titrated with 0.1 N sodium hydroxide until a faint pink colour was observed.
Determination of total soluble solids (TSS). The TSS value was determined using a digital refractometer (Hanna Instruments (Pty) Ltd., Johannesburg, South Africa) by placing the beverage on the sample well and observing the reading.
Function fitting and neural network construction. The input and output data from the RSM experiments were exported to MATLAB R2020a (MathWorks, Natick, MA, USA) software, and a basic code was used to design and run the neural network. A feed-forward neural network with an input layer and an output layer was used. Fermentation time—X1 (h), fermentation temperature—X2 (°C), and starter culture concentration—X3 (%) were used as the neural network inputs, while alcohol content—Y1, pH—Y2, TTA—Y3, and TSS—Y4 were used as the neural network outputs. Input and output data from RSM (Table 2) was randomly divided for training (70%), validation (15%), and testing (15%). The Levenberg–Marquardt (LM) training algorithm was used to train, validate, and test the neural network until the desired coefficient of correlation (R2) was obtained.
Statistical analysis. All experiments were conducted in triplicates and expressed as mean ± standard deviation. Analysis of variance (ANOVA) was employed to determine the significance of the data using Design-Expert® software version 11.0.0 (Stat-Ease Inc., Minneapolis, MN, USA). Significant F tests at (p < 0.05) levels of probability are reported.
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Publication 2023
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II) Beverages Buffers Carbohydrates Ethanol Fermentation Fingers Food Foreign Bodies Grapes Heartburn Lactic Acid Metschnikowia Momordica charantia Phenolphthalein Saccharomyces cerevisiae Sodium Hydroxide Syncope

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More about "(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)"

The chemical compound (1,2-diamino-4-nitrobenzene)dichloroplatinum(II), also known as Plato-1, is a synthetic substance used in various research applications.
It is closely related to other important compounds like NaCl (sodium chloride), Luciferin, and Cyanine5.5 NHS ester.
This nitro-substituted benzene derivative of platinum(II) chloride has unique properties that make it useful for studying cellular processes, imaging techniques, and more.
The presence of the nitro group and the two amino groups on the benzene ring give it distinct chemical characteristics compared to similar platinum complexes.
When combined with other reagents like 1,2-ethanedithiole, trifluoroacetic acid, or thioanisole, (1,2-diamino-4-nitrobenzene)dichloroplatinum(II) can undergo various transformations and reactions.
These can be leveraged to synthesize other compounds or investigate reaction mechanisms.
Researchers often use (1,2-diamino-4-nitrobenzene)dichloroplatinum(II), or its abbreviation Plato-1, in conjunction with chelating agents like P-SNC-deferoxamine (DFO) and salts like K2HPO4.
This allows for the creation of labeled compounds, metal complexes, and other derivatives with diverse applications.
Optimizing the research protocols involving (1,2-diamino-4-nitrobenzene)dichloroplatinum(II) is crucial for ensuring reproducibility and accuracy.
PubCompare.ai can help by comparing protocols from literature, preprints, and patents to identify the best methods and products for your specific needs.
Visit PubCompare.ai today to streamline your research on this important chemical.