The MAX statistic is a measure utilizing multiple data encodings to maximize the power for finding a genetic effect. Sladek et al.1 (link) originally utilized this statistic with a combination of the additive, dominant, and recessive encodings in logistic regression. We have extended the statistic to include the genotypic encoding of the chi-square test, which is shown in our results to be uncorrelated with logistic regression. To implement the PLATO_MAX approach1 (link) and test its efficacy, a simulation study was performed. First, 100 datasets with 1000 cases and 1000 controls were simulated to find the power of the method. Three genetic effects with an odds ratio of 1.5 – one additive model, one recessive model, and one dominant model – were embedded in these datasets. To find the MAX statistic for each SNP, four filters – LOGISTICREGRESS (ADD/D/R) and CHISQUARE (G) – were run and the minimum p-value between the four was kept as the best solution. These four filters represented one filter from each of the four filter classes identified (as described in the results below). We selected one filter per class based on ease of use and interpretation. In order to deal with multiple testing issues, a set of 1000 permutations was performed, building a null distribution for each SNP. Here, the disease status was randomized to create 1000 null datasets where the genotype matrix was held constant but the association between genotype and phenotype was removed. The full PLATO_MAX analysis was performed on each null dataset and the lowest p-value was obtained from each dataset and collected in the empirical null distribution. The original lowest p-value was then compared to the permutation null distribution to find a corrected p-value. The power was calculated for each of the three effects at α=0.01 and 0.05 levels as the number of times out of the 100 datasets that the SNP in question was found to be significant after permutation testing. The false positive rate was calculated as the average number of incorrect loci found to be significant for each dataset divided by the number of SNPs in the dataset. We also investigated the Type 1 error rate of the PLATO_MAX approach by simulating 1000 datasets with no genetic effect. The PLATO_MAX approach was then run with permutation and the number of times which SNPs were found to be significant with the null model was examined.
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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
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Most cited protocols related to «(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)»
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
ARID1A protein, human
Genotype
Phenotype
Single Nucleotide Polymorphism
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Alleles
Chromosomes
Genes, Recessive
Genetic Polymorphism
Reproduction
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Europeans
Genome
Genotype
HapMap
Hereditary Diseases
MLL protein, human
Single Nucleotide Polymorphism
The cells were grown in their respective medium to the needed OD. Basic medium (BM) for S. aureus consisted of Soy Peptone (10 g; Plato), Yeast Extract (5 g; Deutsche Hefewerke), NaCl (5 g; Carl-Roth), Glucose (1 g; Carl Roth) and K2HPO4 (1 g; Applichem). Deionized water was added to a final volume of 1 liter and pH was adjust to 7.2. LB medium for E. coli consisted of Peptone (10 g; Plato), Yeast Extract (5 g; Deutsche Hefewerke) and NaCl (5 g; Carl Roth). Deionized water was added to a final volume of 1 liter and pH was adjust to 7.2.
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Cells
Escherichia coli
Glucose
Peptones
potassium phosphate, dibasic
Sodium Chloride
Yeasts
The primary outcome of the PRINCE trial was the proportion of patients with high platelet reactivity at 90 days. High platelet reactivity was defined as a P2Y12 reaction unit of more than 208 measured using the VerifyNow P2Y12 assay. Prespecified secondary outcomes included high platelet reactivity at 90 days (seven days either way) in patients carrying genetic variants that would affect clopidogrel metabolism; any stroke (ischaemic or haemorrhagic); and composite clinical vascular events (ischaemic/haemorrhagic stroke, transient ischaemic attack, myocardial infarction, or vascular death) at 90 days (seven days either way), six months, and one year. Each reported composite clinical vascular event and safety outcome was independently adjudicated by two members (KD and Jimei Li) of the clinical event adjudication committee, who were blinded to the treatment group assignments. All discrepancies were reviewed by all five members of the committee and resolved by consensus.
The primary safety outcome was major bleeding, which was defined as that in the PLATO study classification of haemorrhagic events: fatal or life threatening bleed, major bleed, and other (supplementary appendix, PLATO bleeding classification). Secondary safety outcomes included the incidence of intracranial bleeding; dyspnoea events; and mortality at 90 days (seven days either way), six months, and one year.
The primary safety outcome was major bleeding, which was defined as that in the PLATO study classification of haemorrhagic events: fatal or life threatening bleed, major bleed, and other (supplementary appendix, PLATO bleeding classification). Secondary safety outcomes included the incidence of intracranial bleeding; dyspnoea events; and mortality at 90 days (seven days either way), six months, and one year.
(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Biological Assay
Blood Platelets
Blood Vessel
Cerebrovascular Accident
Clopidogrel
Dyspnea
Genetic Diversity
Hemorrhagic Stroke
Metabolism
Myocardial Infarction
Patients
Safety
Transient Ischemic Attack
Most recents protocols related to «(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)»
To unpack some of the motivations behind Landi’s provocative approach, it is necessary to offer an analysis of the philosophical background of his works, especially the Iatrologia and the Opuscula as illustrated by three private letters9 addressed to him by the nobleman Sebastiano Erizzo (1525–1585), one of Landi’s pupils in Padua during the period 1543–1545. Erizzo’s letters address certain critiques that Landi had made of his pupil’s manuscript, Dell’instrumento et via inventrice degli antichi (“The Instrument and Method of Invention of the Ancients”), eventually published by Erizzo in 1554. Both in his letters and works, Erizzo offers a glimpse into Landi’s approach to method and the influence it had on his pupils. In the first letter (15 November 1551), Erizzo addresses Landi’s criticism that the title is unclear and should be revised to read Della prestantia dell’istrumento divisivo or Dell’eccellenza del metodo divisivo (“On the Efficacy/Excellence of the Divisive Method”). Erizzo praises his master for having introduced him to the importance of division as a method in the arts. Landi had discussed the importance of division as an instrument of discovery in his Iatrologia, while the Opuscula had demonstrated how this method could be used to present complex issues such as the nature of motion and time.10 As we shall see, however, Landi’s use of division was conceived to be used in conjunction with syllogism, not as a substitute for it, which explains why he criticised his pupil for the bold title of his forthcoming book. To defend himself against Landi’s criticism, Erizzo quotes passages from Plato, Aristotle, and Proclus, wherein division is praised for its capacity to lead to the discovery of new truths. In the second letter to Landi (dated 4 March 1552), Erizzo refers to Landi’s manuscript treatise “On Methods and Orders” which discussed the efficacy of division in detail and which Erizzo had consulted. Erizzo praises Landi’s hesitancy in publishing it, because the work would have been met with opposition from poorly-qualified “envious people.”11 Whether or not such a manuscript was in fact part of the promised work on scholastic controversies remains unclear. Landi’s propensity to use division as a method and the extent of his influence on Erizzo’s work is visible in the fact that Erizzo dedicated Dell’instrumento to Landi who, in Erizzo’s words, had first introduced the possibility of thinking of “division” and “order” as methods of equal value to syllogism and apodictic demonstration.
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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Motivation
Pupil
AlphaFold2 (https://alphafold.ebi.ac.uk/ ) was run using the ColabFold notebook (https://github.com/sokrypton/ColabFold ) using version 2.1 on default settings. Multisequence alignment of Fig. 2A was performed in SeaView version 5.0.4 (www.mybiosoftware.com/seaview-4-2-12-sequence-alignment-phylogenetic-tree-building.html ; RRID: SCR_015059) (59 (link)). The ATG9 HDIR (828–839)–fused ATG101 (1–198):ATG13 (1–197) complex was concentrated to 6 mg/ml in the ITC buffer. Crystallization was carried out by sitting drop vapor diffusion using an automated liquid handling system (Mosquito, TTP Labtech, UK) at 288 K in 96-well plates. The protein solution was mixed with the reservoir buffer composed of 0.1 M Hepes (pH 7.5), 0.2 M NaCl, and 12% PEG8000 (polyethylene glycol, molecular weight 800) with a ratio of 1:1. The crystal was obtained in 2 to 4 days. Crystals were cryoprotected in 28% glycerol/reservoir buffer and frozen in liquid N2. The protocol for purification of the ATG9 HDIR-ATG101:ATG13HORMA complex and crystallization has been deposited (dx.doi.org/10.17504/protocols.io.cc55sy86 ).
Native data were collected from a single frozen crystal using a Dectris Pilatus 6M detector at beamline 12-2, Stanford Synchrotron Radiation Lightsource (SSRL). All data were processed and scaled using X-ray Detector Software 4.0 (https://xds.mr.mpg.de/ ; RRID: SCR_015652) (60 (link)). The crystal diffracted to 2.4-Å resolution and belonged to space group P212121 with unit cell dimensions a = 45.453 Å, b = 139.86 Å, c = 147.595 Å, and α = β = γ = 90°. A molecular replacement solution was found using partial structures derived from the ATG101:ATG13 HORMA apo structure (PDB: 5C50) as a search model with Phenix (version 1.20.1-4487) (61 (link)). Model building and refinement were carried out using Coot 0.9.6 EL (www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ ; RRID: SCR_014222) (62 (link)) and Phenix version 1.20.1-4487 (www.phenix-online.org/ ; RRID: SCR_0142294) (61 (link)). Structural figures were generated with PyMOL, version 2.5 (https://pymol.org/ ; RRID: SCR_000305) (63 ) or UCSF Chimera, version 1.16 (http://plato.cgl.ucsf.edu/chimera/ ; RRID: SCR_004097) (64 (link)).
Native data were collected from a single frozen crystal using a Dectris Pilatus 6M detector at beamline 12-2, Stanford Synchrotron Radiation Lightsource (SSRL). All data were processed and scaled using X-ray Detector Software 4.0 (
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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Buffers
Cells
Chimera
Crystallization
Culicidae
Diffusion
Freezing
Glycerin
HEPES
polyethylene glycol 8000
Polyethylene Glycols
Proteins
Radiation
Radiography
Sequence Alignment
Sodium Chloride
The effectiveness of the treatment was assessed based on the incidence of stroke (ischemic or hemorrhagic) or composite vascular events (hemorrhagic or ischemic stroke, transient ischemic attack, myocardial infarction, or vascular death) within a 90-day period. Safety outcomes were identified according to the PLATO standard for bleeding events after 90 days [16 (link)].
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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Blood Vessel
Cerebrovascular Accident
Myocardial Infarction
Safety
Stroke, Ischemic
Transient Ischemic Attack
After identifying specific virtues in the training program, we looked for themes to categorize them. It appeared helpful to use well known categories, already available in virtue ethical theory. We distinguish between cardinal, intellectual, and moral virtues. This classification dates back to Ancient Greek philosophers such as Plato and Aristotle [38 ]. Some of the virtues identified did not fit into any of these classic categories. We labelled them as professional virtues because these virtues resemble qualities deemed laudable in the profession and practice of the ENT surgeon. See Table 1 for more information about these virtue categories which are based on literature [9 38 39 (link)]. Although such categorization is also widely debated, these four categories served the purpose of providing an insightful overview. Furthermore, any categorization can lead to discussion, as it is almost never completely exhaustive.
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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Surgeons
Training Programs
Blended bitter gourd and grapes were mixed at different concentrations and monitored for pH, alcohol, total titratable acidity (TTA), and total soluble solids (TSS), and we concluded that, at a concentration of 35% bitter gourd and 65% grapes, the ratio would be suitable for enough sugar content for fermentation to take place as well as enough bitter gourd juice for its physiochemical properties to be investigated. The mixture was subsequently inoculated with Saccharomyces cerevisiae and Metschnikowia pulcherimma (Anchor Yeast, Lallemand, South Africa). Experiments were conducted in triplicates, and samples were withdrawn after each experimental run to test for alcohol (°P), pH, total titratable acidity (TTA) (% lactic acid), and total soluble solids (TSS) (g/100 g).
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(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)
Beverages
Buffers
Carbohydrates
Ethanol
Fermentation
Fingers
Food
Foreign Bodies
Grapes
Heartburn
Lactic Acid
Metschnikowia
Momordica charantia
Phenolphthalein
Saccharomyces cerevisiae
Sodium Hydroxide
Syncope
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More about "(1,2-diamino-4-nitrobenzene)dichloroplatinum(II)"
The chemical compound (1,2-diamino-4-nitrobenzene)dichloroplatinum(II), also known as Plato-1, is a synthetic substance used in various research applications.
It is closely related to other important compounds like NaCl (sodium chloride), Luciferin, and Cyanine5.5 NHS ester.
This nitro-substituted benzene derivative of platinum(II) chloride has unique properties that make it useful for studying cellular processes, imaging techniques, and more.
The presence of the nitro group and the two amino groups on the benzene ring give it distinct chemical characteristics compared to similar platinum complexes.
When combined with other reagents like 1,2-ethanedithiole, trifluoroacetic acid, or thioanisole, (1,2-diamino-4-nitrobenzene)dichloroplatinum(II) can undergo various transformations and reactions.
These can be leveraged to synthesize other compounds or investigate reaction mechanisms.
Researchers often use (1,2-diamino-4-nitrobenzene)dichloroplatinum(II), or its abbreviation Plato-1, in conjunction with chelating agents like P-SNC-deferoxamine (DFO) and salts like K2HPO4.
This allows for the creation of labeled compounds, metal complexes, and other derivatives with diverse applications.
Optimizing the research protocols involving (1,2-diamino-4-nitrobenzene)dichloroplatinum(II) is crucial for ensuring reproducibility and accuracy.
PubCompare.ai can help by comparing protocols from literature, preprints, and patents to identify the best methods and products for your specific needs.
Visit PubCompare.ai today to streamline your research on this important chemical.
It is closely related to other important compounds like NaCl (sodium chloride), Luciferin, and Cyanine5.5 NHS ester.
This nitro-substituted benzene derivative of platinum(II) chloride has unique properties that make it useful for studying cellular processes, imaging techniques, and more.
The presence of the nitro group and the two amino groups on the benzene ring give it distinct chemical characteristics compared to similar platinum complexes.
When combined with other reagents like 1,2-ethanedithiole, trifluoroacetic acid, or thioanisole, (1,2-diamino-4-nitrobenzene)dichloroplatinum(II) can undergo various transformations and reactions.
These can be leveraged to synthesize other compounds or investigate reaction mechanisms.
Researchers often use (1,2-diamino-4-nitrobenzene)dichloroplatinum(II), or its abbreviation Plato-1, in conjunction with chelating agents like P-SNC-deferoxamine (DFO) and salts like K2HPO4.
This allows for the creation of labeled compounds, metal complexes, and other derivatives with diverse applications.
Optimizing the research protocols involving (1,2-diamino-4-nitrobenzene)dichloroplatinum(II) is crucial for ensuring reproducibility and accuracy.
PubCompare.ai can help by comparing protocols from literature, preprints, and patents to identify the best methods and products for your specific needs.
Visit PubCompare.ai today to streamline your research on this important chemical.