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2-Deoxyglucose

2-Deoxyglucose is a glucose analog that inhibits glycolysis and has been used as a research tool to study cellular metabolism.
It is taken up by cells and phosphorylated, but cannot be further metabolized, leading to depletion of cellular ATP levels.
This property has made 2-deoxyglucose a valuable agent for investigating the role of glucose metabolism in various biological processes, such as cancer cell proliferation, neuronal activity, and immune function.
Researchers can optimize their 2-deoxyglucose studies using the PubCompare.ai platform, which leverages AI to locate the best protocols from literature, preprints, and patents, enhancing reproducibility and accuracy.
PubCompare.ai unlocks the power of intelligent protocol and product selection for 2-DG reasearch, helping scientists maximize the impact of their work.

Most cited protocols related to «2-Deoxyglucose»

Glycan Reader has been integrated into the CHARMM-GUI web interface.19 (link) The user can either specify the PDB ID or upload the PDB structure into the server to generate the carbohydrate or protein/carbohydrate complex structure. If a carbohydrate is detected, then the graphical representation of the carbohydrate chain sequence will be displayed and the user can select the carbohydrate chains that they want to initialize in CHARMM (see Fig. 4). CHARMM allows modification in chemical structures, e.g., disulfide bond formation or phosphorylation using patch residues, and glycosidic linkages are generated using specific patch residues in CHARMM. The Glycan Reader web interface assigns the proper patches for glycosidic linkages and generates the CHARMM protein structure file (PSF) and coordinate files in both the PDB format and the CHARMM-specific coordinate format (CRD).
Currently, there are various patch residues available in the CHARMM carbohydrate force field to cover a range of carbohydrates including the majority found in eukaryotes.25 For example, O-methyl-, octyl-, dodecyl-, phosphate, and sulfate groups can be added to the reducing end of a sugar, and those modifications are properly patched in the PSF generation step (see Table 2 for the complete list of patch residues available). However, other types of common derivatizations, such as deoxidation, are not available, and, in such cases, the basic form of the carbohydrate molecule is used without modification and Glycan Reader informs the user. For example, if a user uploaded a structure of 2-deoxy glucose, a glucose molecule will be generated instead.
Publication 2011
2-Deoxyglucose Carbohydrates Carbohydrate Sequence Disulfides Eukaryota Glucose Glycosides Patched Receptors Phosphates Phosphorylation Polysaccharides Proteins Sugars Sulfates, Inorganic
Clamps were performed according to recent recommendations of the Mouse Metabolic Phenotyping Center Consortium (15 (link)). After surgical implantation of an indwelling catheter in the right jugular vein, the mice were allowed to recover for 1 week prior to clamp experiments. Following an overnight 14-h fast, the mice were infused with 3-[3H]glucose at a rate of 0.05 μCi/min for 120 min to determine basal glucose turnover. Next, a primed infusion of insulin and 3-[3H]glucose was administered at 7.14 milliunits·kg−1·min−1 and 0.24 μCi/min, respectively, for 4 min, after which the rates were reduced to 3 milliunits·kg−1·min−1 insulin and 0.1 μCi/min 3-[3H]glucose for the remainder of the experiment. Blood was collected via tail massage for plasma glucose, insulin, and tracer levels at set time points during the 140-min infusion, and a variable infusion of 20% dextrose was given to maintain euglycemia. Glucose turnover was calculated as the ratio of the 3-[3H]glucose infusion rate to the specific activity of plasma glucose at the end of the basal infusion and during the last 40 min of the hyperinsulinemic-euglycemic clamp study. Hepatic glucose production represents the difference between the glucose infusion rate and the rate of glucose appearance. A 10-μCi bolus injection of [14C]2-deoxyglucose was given at 90 min to determine tissue-specific glucose uptake, which was calculated from the area under the curve of [14C]2-deoxyglucose detected in plasma and the tissue content of [14C]2-deoxyglucose-6-phosphate, as previously described (16 (link)). Following collection of the final blood sample, the mice were anesthetized with an intravenous injection of 150 mg/kg pentobarbital, and tissues were harvested and froze with aluminum forceps in liquid nitrogen. All of the tissues were stored at −80 °C until later use.
Publication 2011
2-Deoxyglucose 2-deoxyglucose-6-phosphate Aluminum BLOOD Euglycemic Clamp Forceps Freezing Glucose Indwelling Catheter Insulin Jugular Vein Massage Mus Nitrogen Operative Surgical Procedures Ovum Implantation Pentobarbital Plasma Specimen Collections, Blood Tail Tissues Tissue Specificity
After fasting for 6–12 h, the subjects were kept in an air-conditioned room at 19°C with light clothing (usually a T-shirt with underwear) and put their legs on an ice block intermittently (usually for 4 min every 5 min). After 1 h under this cold condition, they were given an intravenous injection of 18F-fluoro-2-deoxyglucose (FDG) (259 MBq) and kept under the same cold condition. In some cases, the subjects were kept at 26–28°C with standard clothing and without leg icing (warm condition). One hour after the 18F-FDG injection, whole-body PET/CT scans were performed on a PET/CT system (Aquiduo; Toshiba Medical Systems, Otawara, Tochigi, Japan) in a room at 24°C. With the CT parameters of 120 kv and real-exposure control, unenhanced low-dose spiral axial 2-mm collimated images were obtained. This was used for PET attenuation correction as well as anatomic localization. Subsequently, full-ring PET was performed in six incremental table positions, each ∼15 cm in thickness. The total time of these scans was ∼30 min.
PET and CT images were coregistered and analyzed by a VOX-BASE workstation (J-MAC System, Sapporo, Japan). Two experienced blinded observers assessed the FDG uptake, particularly in both sides of the neck and paravertebral regions, by visually judging the radioactivity greater than background. In parallel, the FDG uptake in the neck region was quantified and expressed as relative to that in the whole brain.
Publication 2009
2-Deoxyglucose Brain Cardiac Arrest Cold Temperature Hartnup Disease Light Neck Radioactivity Radionuclide Imaging Scan, CT PET Whole Body Imaging

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Publication 2009
2-Deoxyglucose Animals Diet Euglycemic Clamp Fibrosis Food Glucose Mus Proteins
To investigate the reproducibility of each assay, cells were plated into sterile 96-well plates at a concentration of 500 cells/well and allowed to attach for 24 hours before exposure to varying concentrations of 3-bromopyruvate, lonidamine or 2-deoxyglucose. Internal triplicates for each concentration were included in each experiment. After a further 24- or 72 hours incubation period, cell enumeration assays were performed. From the data obtained after four independent experiments the concentration of each inhibitor which inhibits 50% cell viability (IC50) as measured by each enumeration assay with triplicate repeats was determined using GraphPad Prism® version 4.0 for Windows (GraphPad Software, San Diego California USA, www.graphpad.com) and the variability of the IC50 concentrations was compared.
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Publication 2015
2-Deoxyglucose Biological Assay bromopyruvate Cardiac Arrest Cells Cell Survival lonidamine prisma Sterility, Reproductive

Most recents protocols related to «2-Deoxyglucose»

Seahorse XF Cell Mito Stress Test kit (Agilent Technologies, Inc.) was used to determine the O2 consumption rate (OCR) and Seahorse XF Glycolysis Stress Test kit was used to examine the extracellular acidification rate (ECAR), as previously described (19 (link)). The transfected SAOS-2 cells (1x105) were plated onto a Seahorse XF-96 cell culture microplate. Cells were next equilibrated with XF Base media (Agilent Technologies Deutschland GmbH) at 37˚C for 1 h in an incubator lacking CO2 and then serum-starved for 1 h in glucose-free media-containing treatments (Invitrogen; Thermo Fisher Scientific, Inc.). A total of 1 mM oligomycin, 1 mM p-trifluoromethoxy carbonyl cyanide phenylhydrazone (MilliporeSigma), 2 mM antimycin A (MilliporeSigma) and 2 mM rotenone (MilliporeSigma) were added to each well at 37˚C overnight to detect the OCR. For the measurement of ECAR, each well contained 10 mM glucose, 1 mM oligomycin (MilliporeSigma) and 80 mM 2-deoxyglucose (MilliporeSigma) at 37˚C overnight. A Seahorse XF-96 analyzer (Agilent Technologies, Inc.) was used to detect the samples and data were assessed using Seahorse XFe24 Wave version 2.2 software (Agilent Technologies, Inc.).
Publication 2023
2-Deoxyglucose Antimycin A carbonyl cyanide phenylhydrazone Cell Culture Techniques Cells Exercise Tests Glucose Glycolysis Mitomycin Oligomycins Ovalocytosis, Malaysian-Melanesian-Filipino Type Rotenone Seahorses Serum
We used a cell-based fluorescently-labeled deoxyglucose analog kit (2-NBDG kit, Cayman Chemical, USA) to evaluate whether compounds 1–11 increased glucose uptake in L6 cells.49,50 Before the experiment, the differentiated L6 myotube was inoculated into a 96-well plate at a density of 1 × 104–4 × 104 cells/well. After 2 h of starvation in serum-free α-MEM medium, we add 100 μL MEM-α medium, which contained different drugs, to each well, and cells were incubated for 12 h to 100% fusion. After overnight incubation, cells were treated with insulin (100 nM), compounds 1–11 (30 μg mL−1) or normal control (0.1% DMSO) in 100 μL glucose-free α-MEM containing 150 μg mL−1 2-NBDG. At the end of the treatment, plates were centrifuged for five minutes at 400 g at room temperature. The supernatant was aspirated, and 200 μL of cell-based assay buffer was added to each well. Plates were centrifuged for five minutes at 400 g at room temperature. Then the supernatant was aspirated, and 100 μL of cell-based assay buffer was added to each well. The 2-NBDG taken up by cells was detected with fluorescent filters (excitation/emission = 485/535 nm).
Publication 2023
2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-2-deoxyglucose 2-Deoxyglucose 6-deoxy-N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)aminoglucose Biological Assay Buffers Caimans Cells Glucose Insulin Pharmaceutical Preparations Serum Skeletal Myocytes Sulfoxide, Dimethyl
The 2-(N-(7-Nitrobenz-2-oxa-1,3-diazol-4-yl)Amino)-2-Deoxyglucose (2-NBDG) cell-based glucose uptake assay was performed. Briefly, following pre-treatment with BADGE (20 μM) for 1 hour, the cells were treated with 100 μg/mL of CLA/CLAGS4 in glucose free DMEM for 48 hours. Thirty minutes before the end of the treatment, 2-NBDG was added to a final concentration of 100 μg/mL in glucose free medium. The cells were harvested, and assay was performed as according to the manufacture's guidelines (Cayman Chemical, Michigan, USA). The fluorescence was recorded using fluorospectrometric with fluorescent filter (excitation/emission = 485 nm/535 nm). The results were expressed as glucose uptake (% of control).
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Publication 2023
2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-2-deoxyglucose 2-Deoxyglucose Biological Assay Caimans Cells Fluorescence Glucose
Cellular oxidative phosphorylation and glycolysis alternations were determined with the Seahorse XF24 Flux Analyser (Seahorse Bioscience) by measuring extracellular acidification rates (ECAR) and oxygen consumption rates (OCR), respectively, in real time according to the manufacturer's instructions. HCC‐LM3 were seeded in a XF24‐well plate (Seahorse Bioscience) at a density of 3 × 105 per well with ASPP2 knockdown cells and control cells, then allowed to attach overnight. OCR was assessed using sequential injection of 1 μM oligomycin, 1 μM carbonyl cyanide 4‐(trifluoromethoxy) phenylhydrazone (FCCP), 1 μM antimycin and rotenone. For assessment of ECAR, cells were incubated with unbuffered medium followed by injection of 10 mM glucose, 1 μM oligomycin (Sigma‐Aldrich) and 80 mM 2‐deoxyglucose (Sigma‐Aldrich). The basal levels of OCR and ECAR were recorded first, then the OCR and ECAR levels were recorded after sequential injection of the compounds that inhibit the respiratory mitochondrial election transport chain, ATP synthesis or glycolysis. Both OCR and ECAR measurements were normalized to cell numbers and reported as pmoles/min for OCR and mpH/min for ECAR.
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Publication 2023
2-Deoxyglucose Anabolism antimycin Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone Cardiac Arrest Cells Glucose Glycolysis mesoxalonitrile Mitochondrial Inheritance Oligomycins Oxidative Phosphorylation Oxygen Consumption phenylhydrazone Respiratory Chain Rotenone Seahorses
To evaluate the changes in mitochondrial and glycolytic function Seahorse XFp Cell MitoStress Test and Seahorse XFp Glycolysis Stress Test (Agilent Technologies, Santa Clara, CA) were performed according to the manufacturer’s protocol. In brief, MCF10A or MDA-MB-231 cells were plated at 40,000 cells/well in poly-D-lysine (50 µg/ml, Sigma-Aldrich) coated plates. The same number of cells were plated for each cell line. On the day of the assay the cell culture growth medium was replaced with either MitoStress or GlycoStress assay medium. MitoStress assay medium consisted of low-buffered pH 7.4 DMEM (Sigma-Aldrich) supplemented with glutamine (2 mM, ThermoFisher Scientific), glucose (10 mM, ThermoFisher Scientific) and pyruvate (1 mM, ThermoFisher Scientific). GlycoStress assay medium consisted of low-buffered pH 7.4 DMEM supplemented with glutamine (2 mM). The cell culture microplate was incubated in a non-CO2 incubator at 37 °C for 1 h prior to the assay. The seahorse compounds were prepared in assay media and injected into the injection ports.
For MitoStress assays, oligomycin (1 µM, Sigma-Aldrich), carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (FCCP, 2 µM, Sigma-Aldrich) and rotenone/antimycin A (0.5 µM each, Sigma-Aldrich) were used. For glycolysis stress assays, glucose (10 mM), oligomycin (1 µM) and 2-deoxy glucose (50 mM, Sigma-Aldrich) were used.
Oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) were reported as absolute rates (pmoles/min for OCR and mpH/min for ECAR). Data were exported from the Seahorse XFp Extracellular Flux Analyser into Seahorse XF Report Generator software. The nine replicates for each condition (3 technical replicates for each of the 3 biological replicates) were compiled in GraphPad Prism 7 Software.
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Publication 2023
2-Deoxyglucose Antimycin A Biological Assay Biopharmaceuticals Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone Cell Culture Techniques Cell Lines Cells Exercise Tests Glucose Glutamine Glycolysis Lysine MDA-MB-231 Cells mesoxalonitrile Mitochondrial Inheritance Oligomycins Oxygen Consumption phenylhydrazone Poly A prisma Pyruvate Rotenone Seahorses

Top products related to «2-Deoxyglucose»

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2-deoxyglucose is a synthetic glucose analog. It is a chemical compound that can be used in research and experimental settings. The primary function of 2-deoxyglucose is to inhibit glycolysis, the metabolic pathway that converts glucose into energy. This compound can be utilized as a tool to study cellular metabolism and energy production processes.
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2-NBDG is a fluorescent glucose analog used as a tool for the detection and measurement of glucose uptake in cells. It serves as a substrate for glucose transporters and can be used to visualize and quantify cellular glucose utilization.
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Oligomycin is a laboratory product manufactured by Merck Group. It functions as an inhibitor of the mitochondrial F1F0-ATP synthase enzyme complex, which is responsible for the synthesis of adenosine triphosphate (ATP) in cells. Oligomycin is commonly used in research applications to study cellular bioenergetics and mitochondrial function.
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The XF96 Extracellular Flux Analyzer is a laboratory instrument designed to measure the metabolic activity of cells in a high-throughput manner. The device is capable of simultaneously assessing the oxygen consumption rate and extracellular acidification rate of cells, providing insights into their respiratory and glycolytic activity.
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2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-2-deoxyglucose (2-NBDG) is a fluorescent glucose analog used for the detection and measurement of glucose uptake in cells. It is a neutral, hydrophilic molecule that can be readily taken up by cells through glucose transporters.
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Rotenone is a naturally occurring insecticide and piscicide derived from the roots of certain tropical plants. It is commonly used as a research tool in laboratory settings to study cellular processes and mitochondrial function. Rotenone acts by inhibiting the electron transport chain in mitochondria, leading to the disruption of cellular respiration and energy production.
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[3H]-2-deoxyglucose is a radiolabeled glucose analog used as a tracer to study glucose uptake and metabolism in biological systems. It contains a tritium (3H) label, which allows for its detection and quantification using techniques such as liquid scintillation counting.
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Antimycin A is a chemical compound that acts as a potent inhibitor of mitochondrial respiration. It functions by blocking the electron transport chain, specifically by interfering with the activity of the cytochrome bc1 complex. This disruption in the respiratory process leads to the inhibition of cellular respiration and energy production within cells.
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The XF24 Extracellular Flux Analyzer is a lab equipment product from Agilent Technologies. It is designed to measure the oxygen consumption rate and extracellular acidification rate of cells in real-time.
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2-NBDG is a fluorescent glucose analog used for the detection and measurement of glucose uptake in cells. It functions as a tool for studying glucose metabolism in biological systems.

More about "2-Deoxyglucose"

2-Deoxyglucose (2-DG) is a glucose analog that has been extensively used as a research tool to study cellular metabolism.
It is a valuable agent for investigating the role of glucose metabolism in various biological processes, such as cancer cell proliferation, neuronal activity, and immune function. 2-DG is taken up by cells and phosphorylated, but it cannot be further metabolized, leading to the depletion of cellular ATP levels.
This property makes 2-DG a potent inhibitor of glycolysis, a fundamental metabolic pathway in which glucose is converted to energy.
Researchers can utilize the PubCompare.ai platform to optimize their 2-DG studies.
This AI-powered tool helps locate the best protocols from literature, preprints, and patents, enhancing the reproducibility and accuracy of their experiments.
PubCompare.ai unlocks the power of intelligent protocol and product selection, enabling scientists to maximize the impact of their 2-DG research.
In addition to 2-DG, researchers may also use other related compounds, such as 2-NBDG (a fluorescent glucose analog), Oligomycin (an inhibitor of ATP synthase), Rotenone (a complex I inhibitor), and Antimycin A (a complex III inhibitor), in combination with the XF96 or XF24 Extracellular Flux Analyzers to study cellular metabolism in depth.
These tools and techniques provide valuable insights into the role of glucose metabolism in various biological processes.
By leveraging the insights and resources available, researchers can design and execute their 2-DG studies with enhanced precision and efficiency, ultimately contributing to a better understanding of cellular metabolism and its implications in health and disease.