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3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane

3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane is a chemical compound with potential applications in biochemical research and diagnostics.
This cyclic peroxide derivative features a spiro-5-chloroadamantane moiety, a methoxy group, and a 3''-phosphoryloxy substituent on the phenyl ring.
Discoveirng the optimal research protocol for this molecule can help ensure reproducibility and accuracy in related studies, streamlining experimentation and enabling access to valuable data.

Most cited protocols related to «3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane»

To visualize binding of FabR protein to the two target genes, fabA and fabB, gel shift experiments were employed (Feng and Cronan, 2009b (link), 2010 (link)) with minor improvements. The E. coli FabR binding palindromes were synthesized using two complementary oligonucleotides (fabAec_P-F plus fabAec_P-R for fabA gene and fabBec_P-F plus fabBec_P-R for fabB gene) (Table 2). The V. cholerae fabA probe covering a predicted FabR binding site was PCR amplified with two primers, fabAec_P-F plus fabAec_P-R, and a DNA fragment containing fabB promoter region (257 bp) was obtained with a pair of primers, fabBec_P-F plus fabBec_P-R (Table 2). The probes were digoxigenin-labeled by terminal transferase incorporation of digoxigenin-ddUTP (Roche). For gel shift assays the digoxigenin-labeled DNA probes (~ 0.1 pmol) were mixed with serial dilutions of the in vitro translated FabR protein in binding buffer (20 μl total volume) (Roche) at room temperature for 15 min. The DNA/protein mixtures were loaded onto 7% native PAGE and after running the gel contents were transferred to an equilibrated, positively charged nylon membrane (Roche) by contact blotting. The luminescence signal was developed in CSPD working solution at room temperature following the incubation of the nylon membrane with an anti-digoxigenin antibody. Two hours later an exposure of the nylon membrane to an enhanced chemiluminescence (ECL, Amersham) detection system gave signal capture.
Publication 2011
2',3'-dideoxyuridine-5'-triphosphate 3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Antibodies, Anti-Idiotypic Binding Proteins Binding Sites Buffers Chemiluminescence Digoxigenin DNA, A-Form DNA Probes Electrophoretic Mobility Shift Assay Escherichia coli Genes Luminescence Native Polyacrylamide Gel Electrophoresis Nylons Oligonucleotide Primers Oligonucleotides Proteins Technique, Dilution Tissue, Membrane Transferase Vibrio cholerae
To verify homologous recombination at the AAVS1 locus a 705-bp probe specific for both the endogenous PPP1R12C sequence and the 5’-homology arm of our constructs was synthesized by PCR amplification using primers AAV5Pb-F: 5’–GGCCTGGGTCACCTCTACG and AAV5Pb-R: 5’–GAACCAGAGCCACATTAACCG and DIG-dUTP labeling kit (Roche). 10μg of genomic DNA were digested with SphI overnight, after which Southern blotting and chemi-luminescence detection with CSPD were carried out following the instruction manuals of DIG High Prime DNA Labeling and Detection Starter Kit II (Roche). Based on the digestion pattern wild-type and targeted integration yield expected bands of 6.5kb and 3.8kb, respectively, due to the presence of an SphI site within our constructs. Verification of homologous recombination at the CLYBL locus was conducted similarly using a 528-bp probe specific for both the endogenous CLYBL sequence and the 5’-homology arm of our constructs synthesized using primers C13–5Pb-F: 5’–GGCATACCATCAAGTCCAAAG and C13–5pb-R: 5’–TTGGGGAAGAACAAAGAAGG. 10μg of genomic DNA were digested with AvrII overnight, which, after probe hybridization and imaging, yields expected bands of 5.4kb or 3.2kb for wild-type or targeted integrations for all CLYBL targeting donors, respectively. When BamHI was used with the CLYBL probe, a wild type band of 4.4kb and TI band of 11.2kb is expected for pC13N-CAGcopGFP.
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Publication 2015
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Crossbreeding deoxyuridine triphosphate Digestion Donors Genome Homologous Recombination Luminescence Oligonucleotide Primers
Pre vaccination human serum samples were stored at −80°C and heat inactivated at 56°C for 90 min prior to use. The assay was performed as described previously [6] (link), with the following modifications. Briefly, GripTite 293 MSR cells (Invitrogen, catalogue no. R795-07, cultured as per manufacturer’s instructions) seeded the previous day at 3×104 cells per well were infected with a 1∶1 mixture of test sera dilutions and ChAdY25-E–SEAP (secreted alkaline phosphatase) recombinant vector. Recombinant adenoviruses were incubated with five serial dilutions of serum in FBS–DMEM (phenol red free; GibcoBRL catalog no. 31053-028) before infection. The final serum dilutions were 1∶18, 1∶72, 1∶288, 1∶1152, 1∶4608; each serum sample was tested in duplicate. Supernatants were collected and assayed for SEAP concentration using CSPD (Tropix PhosphaLite Chemiluminescent Assay Kit, Applied Biosystems UK) according to the manufacturer’s instructions. Luminescence intensity was measured using a Varioskan flash luminometer (Thermo Scientific). Neutralization titers were defined as the serum dilution required to reduce SEAP concentration by 50% compared to wells infected with virus alone. Neutralization titer was calculated by linear interpolation of adjacent values.
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Publication 2012
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Adenoviruses Alkaline Phosphatase Chemiluminescent Assays Cloning Vectors Homo sapiens Infection Luminescence Serum Technique, Dilution TEST mixture Vaccination Virus
To address whether FadR can bind to the V. cholerae plsB promoter region, gel shift assays were conducted as we recently reported (Feng & Cronan, 2009b (link), Feng & Cronan, 2010 (link), Feng & Cronan, 2011 ) with minor modifications. Two DNA probes were used, one of which is about 100 bp of a PCR product obtained by amplification with specific primers plsBvc_P-F plus plsBvc_P-R (Table 2). The second DNA probe containing the predicted FadR binding palindrome was generated by annealing two complementary oligonucleotides (plsBvc_FadR_BS-F plus plsBvc_FadR_BS-R, Table 2) by incubated at 95 °C in TEN buffer (10 mM Tris-HCl, 1 mM EDTA, 100 mM NaCl, pH 8.0) for 5 min followed by slow cooling to 25 °C. The probes were labeled with digoxigenin by terminal transferase incorporation of digoxigenin-ddUTP (Roche). The digoxigenin-labeled DNA probes (~1 pmol) were mixed with purified FadR (in appropriate concentrations) in the binding buffer (Roche) and incubated 15–20 min at room temperature. The DNA/protein mixtures were then analyzed by native PAGE (6% PAGE for the ~100 bp PCR probe, and 8% PAGE for the 39 bp synthetic probe). Contact blotting-aided gel transfer was conducted,followed by UV cross-linking (120 mJ for 180 s), 1 h of blocking of the nylon membrane in 50 ml blocking buffer, and 1 h of incubation with an anti-digoxigenin antibody solution (1:10,000) at room temperature. Subsequently the nylon membrane was washed 5 times (15 min each) and equilibrated with detection buffer for 15 min before 1 h of development of the luminescent reaction in CSPD working solution (Roche) at 37 °C. Finally the membrane was exposed to ECL film (Amersham) for signal capture.
Publication 2011
2',3'-dideoxyuridine-5'-triphosphate 3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Antibodies, Anti-Idiotypic BP 100 Cardiac Arrest Digoxigenin DNA Probes Edetic Acid Electrophoretic Mobility Shift Assay Luminescence Native Polyacrylamide Gel Electrophoresis Nylons Oligonucleotide Primers Oligonucleotides Proteins Sodium Chloride Tissue, Membrane Transferase Tromethamine Vibrio cholerae
Western blot analysis was performed using GFP-specific antibody (Abcam Inc.). Protein was extracted from leaves of individual plant of N. benthamiana, A. thaliana, rose, and strawberry with 300 μl of extraction buffer [100mM TRIS, pH 6.8, 2.5% SDS, 100mM dithiothreitol (DTT), 100mM NaCl, 10% glycerol]. For Arabidopsis, protein was extracted from leaves of individual plants with 300 μl of extraction buffer (125mM TRIS-HCl, pH 6.8, 4% SDS, 20% glycerol, 2% β-mercaptoethanol). For chrysanthemum, protein was extracted from leaves of individual plants with 300 μl of extraction buffer [200mM HEPES, pH 8.0, 20mM EDTA, 100mM DTT, 200mM phenylmethylsulphonyl fluoride (PMSF), 0.2mg ml–1 leupeptin, 50mg ml–1 Polyclar VT]. Bradford assays were used to determine protein quantities, and equal amounts of proteins (10 μg) were separated by 10% SDS–PAGE. Proteins were transferred to a polyvinylidene difluoride membrane (GE Healthcare). CP–GFP was detected after an overnight incubation at room temperature with a 1:10 000 dilution of an anti-GFP antibody conjugated to alkaline phosphatase (Bedoya et al., 2010). Alkaline phosphatase was detected using a chemiluminescent substrate (CSPD; Roche) and exposed to X-ray film (Kodak X-OMAT BT Film/XBT-1).
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Publication 2013
2-Mercaptoethanol 3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Alkaline Phosphatase Arabidopsis Biological Assay Buffers Chrysanthemum Dithiothreitol Edetic Acid Glycerin HEPES Immunoglobulins leupeptin Phenylmethylsulfonyl Fluoride Plant Leaves polyvinylidene fluoride Proteins SDS-PAGE Sodium Chloride Strawberries Technique, Dilution Tissue, Membrane Tromethamine Western Blot X-Ray Film

Most recents protocols related to «3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane»

Example 6

The prevalence of vector neutralising antibodies in human sera from the UK and The Gambia against AdY25-based vectors and AdCh63-based vectors was assessed.

HEK293 cells were infected with Y25Ad5E4Orf6-SEAP or AdCh63-SEAP (SEAP=Secreted Placental Alkaline Phosphatase). Recombinant adenoviruses were incubated with five serial dilutions of serum in FBS-DMEM before infection. The final serum dilutions were 1:18, 1:72, 1:288, 1:1 152, 1:4608; each serum sample was tested in duplicate. Supernatants were collected and assayed for SEAP concentration using CSPD (Tropix) according to the manufacturer's instructions. Luminescence intensity was measured using a Varioskan flash luminometer (Thermo Scientific).

Neutralization titers were defined as the serum dilution required to reduce SEAP concentration by 50% compared to wells infected with virus alone. Neutralization titer was calculated by linear interpolation of adjacent values.

As shown in FIG. 6, the seroprevalence of neutralising antibodies against Y25Ad5E4Orf6 was surprisingly found to be much lower than that for AdCh63 in both the UK and The Gambia.

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Patent 2024
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Adenoviruses alkaline phosphatase, placental Antibodies Cloning Vectors HEK293 Cells Homo sapiens Infection Luminescence Serum Technique, Dilution Virus
Gel-purified (gel extraction kit, Qiagen, Germantown, MD) chiA and v-cath PCR amplicons from agarose served as templates in PCRs incorporating only one (nested) primer for amplification of DIG-labelled ssDNA, complementary to either chiA or v-cath RNA, as described earlier [19 (link)]. RNA blots for each virus construct were pre-treated (30 min, 42 °C, 20 mL DIG Easy Hyb) and hybridized in 10 mL hybridization solution (15 h, 42 °C). Probes were labeled using the DIG nucleic acid detection kit and protocol (Roche, Little Falls, NJ) and 1 mL CSPD substrate (Roche) per blot. Chemiluminescence was detected with X-ray film (Kodak X-Omat).
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Publication 2023
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Chemiluminescence Crossbreeding DNA, Single-Stranded Nucleic Acids Oligonucleotide Primers Polymerase Chain Reaction RNA, Viral Salvia hispanica seed Sepharose X-Ray Film
Isolated RNAs were denatured at 95°C for 3 min and separated using 15% Urea-PAGE. The gels were then stained with SYBR GOLD, imaged and immediately transferred to Roche Nylon Membranes (Roche, catalog number: 11417240001), and UV-cross-linked twice at 0.12J energy. Membranes were pre-hybridized with Roche DIG hybridization buffer (Roche, catalog number: 11796895001) for 60 min at 42°C shaker. DIG- labeled probes (5′-tRNAAla: 5′-DIG-CGCTCTACCACTGAGCTACACCCCC; 5′-tRNAVal: 5′-DIG-GTGATAACCACTACACTACGGAAAC; 5′-tRNAGly: 5′-DIG-AATTCTACCACTGAACCACCCATGC) were added to the hybridization solution and incubated overnight at 42°C. Discarding the hybridization solution, the membranes were washed twice at 42°C with low stringent buffer (2 × SSC with 0.1% [wt/vol] SDS) for 15 min each, followed by twice washes with high stringent buffer (0.1 × SSC with 0.1% [wt/vol] SDS) for 10 min each, and finally washed by washing buffer (1 × SSC) for 10 min. Then, the membrane was blocked in a blocking buffer (Roche, catalog number: 11096176001) at room temperature for 3 h. After which, DIG antibody (Roche, Anti-Digoxigenin-AP Fab fragments, 11093274910) was added into the blocking buffer at a ratio of 1:10,000 and incubated again for another 1 h at room temperature. The membranes were washed 4 times in DIG wash buffer (1 × Maleic acid buffer, 0.3% Tween-20) at room temperature for 15 min each, followed by incubation in developing buffer for 10 min at room temperature. Finally, the membranes were coated with CSPD reagent (Roche, catalog number: 11755633001) at 37°C for 15 min in the dark and imaged by using a Bio-Rad system (USA). Original uncropped images of northern blot and denatured urea gel are shown in Additional file 9: Fig. S9.
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Publication 2023
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Acid Hybridizations, Nucleic Alanine-Specific tRNA Buffers Digoxigenin Glycine-Specific tRNA Gold Immunoglobulins Immunoglobulins, Fab maleic acid Northern Blotting Nylons RNA Tissue, Membrane Tween 20 Urea Valine-Specific tRNA
Digoxigenin-labeled oligonucleotide probes were added to the prehybridization solution (50% formamide, 5 × SSC, 5% dextran sulfate, 0.2%SDS, 1 × Denhardt’s solution, 25 mM sodium phosphate pH 7.4, 100 μg/ml salmon sperm DNA). The nylon membrane of transfer printing was placed in the hybridization bag, and the prehybridization solution (20 ml/100 cm2) was added at 42 °C for 1 h. Hybridization solution was added and hybridized overnight at 42 °C. The next day, the hybrid solution was discarded, and the membrane was washed successively with solution A (2 × SSC, 0.1% SDS) for 5 min × 2 times, solution B (0.5 × SSC, 0.1% SDS) for 15 min × 2 times, and solution C (2 × SSC, 0.3% Tween20) for 1–5 min. Blocking buffer was added for 30 min, add anti-digoxin antibody (1:5000) was added for 30 min, the membrane was washed with solution C for 15 min × 2, the membrane was washed with CSPD diluent for 2–5 min, and CSPD working solution was added to the film for 5 min. The sealed nylon membrane was placed in a dark box at 37 °C for 10 min to enhance the luminescence. After exposure for a certain time, the membrane was removed for development and observation.
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Publication 2023
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Acid Hybridizations, Nucleic Antibodies, Anti-Idiotypic Buffers Digoxigenin Digoxin formamide Hybrids Luminescence Nylons Oligonucleotide Probes Salmo salar sodium phosphate Sperm Sulfate, Dextran Tissue, Membrane Tween 20
Cells were pre-cultivated in normal growth medium for four weeks and then either continued to be cultured in the same medium (reference) or switched to osteogenic medium. To measure osteogenic differentiation by alkaline phosphatase (ALP) activity, cell-seeded scaffolds were collected on days 0, 7, 14, and 21 after the point at which they were transferred to the osteogenic medium. The scaffolds were incubated for 1 h in serum-free medium, washed three times with PBS, and incubated in 2 mL lysis buffer for 20 min on ice. The lysis buffer consisted of PBS with 0.5% Triton® X-100 (#30513, Carl Roth, Karlsruhe, Germany), 25 mM of TRIS (#10601, Carl Roth), 1 mM of MgCl2 (#21892, Carl Roth), and 0.1 mM of ZnCl2 (#Z015250G, Merck, Darmstadt, Germany). To ensure full lysis, the samples were subjected to three cycles of shock freezing (liquid nitrogen) and thawing and were then kept on ice. Special attention was paid to achieving lysis of all cells in the scaffolds. ALP activity was determined using an assay (0.4 mM CSPD™ substrate with Sapphire-II enhancer, #T2210, Thermo Fisher, Darmstadt, Germany) as a measure to determine the degree of cell differentiation to osteoblasts. A total of 20 µL of the lysate was mixed with 100 µL of the reagent in a non-transparent 96-well plate (triplicate measurement). After 20 min at room temperature (RT), chemiluminescence was measured for 0.5 s (Victor X4 multiplate reader, Perkin Elmer). Lysis buffer mixed with the ALP-reagent was used as negative control. A standard curve was generated for reference. Increased protein concentrations (0 to 200 µg/mL in 20 µg/mL steps) were generated from an albumin stock solution (fraction V, 1 mg/mL, #28341, Carl Roth) by dilution in lysis buffer (triplicate measurement). To normalize ALP activity to total protein content, protein concentration was determined using the Bradford assay (5× Roti®Quant, #K015.2, Carl Roth) in a 96-well plate (triplicate measurement). After 5 min at RT, the absorption was measured (λ = 595 nm, 3 s).
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Publication 2023
3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane Albumins Alkaline Phosphatase Attention Biological Assay Buffers Cells Chemiluminescence Differentiations, Cell Magnesium Chloride Nitrogen Osteoblasts Osteogenesis Protein Phosphatase Proteins Sapphire Serum Shock Technique, Dilution Triton X-100 Tromethamine

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Explore the versatile applications of 3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane, a cyclic peroxide derivative with a unique molecular structure.
This compund features a spiro-5-chloroadamantane moiety, a methoxy group, and a 3''-phosphoryloxy substituent on the phenyl ring, making it a valuable tool for biochemical research and diagnostics.
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Explore related techniques and kits, such as the PCR DIG Probe Synthesis Kit, DIG High Prime DNA Labeling and Detection Starter Kit II, TRIzol reagent, DIG Gel Shift Kit, and DIG RNA Labeling Kit.
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Whether you're conducting biochemical research, developing diagnostic assays, or exploring novel applications, the optimal research protocol for 3-(2'-(spiro-5-chloroadamantane))-4-methoxy-4-(3''-phosphoryloxy)phenyl-1,2-dioxetane can help streamline your experiments and unlock valuable data.
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