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5-nitro-2-(3-phenylpropylamino)benzoic acid

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Most cited protocols related to «5-nitro-2-(3-phenylpropylamino)benzoic acid»

The samples of the ‘Huntington Disease’ and the ‘serial dilution’ data series were amplified in 96-well plates in an Applied BioSystems ABI7300. The qPCR reaction was done in 20 µl with primers for ATG5 (Forward: GGCCATCAATCGGAAACTCAT; Reverse: AGCCACAGGACGAAACAGCTT; product: 123bp), PSMB5 (Forward TGTCCCAGAAGAGCCAGGAAT; Reverse: GCAATGTAAGCACCCGCTGTA; product 116 bp) or EEF1A1 (Forward: AAGCTGGAAGATGGCCCTAAA; Reverse: AAGCGACCCAAAGGTGGAT; product: 54 bp), Q-PCR SYBR Green Mastermix (Applied Biosystems) in a concentration of 0.3 µM. The used protocol was identical for all primer sets: 10 min 95°C, 40× (15 s 95°C, 30 s 60°C, 30 s 72°C).
The samples of the ‘developing chicken heart’ dataset were amplified in 384-well plates in a Roche LightCycler480. The qPCR reaction was done in 10 µl with a primer concentration of 1 µM and SYBR Green qPCR Master Mix (Roche). The primers used were NppB (Forward: GATGCCCAGGATGATGAGAG; Reverse: CCTTGGGAGGATCAGGTTCT; product 157 bp), NDUFB3 (Forward: CTCGAGGAGGTCCAAAGAAGGT; Reverse: GTGGCAGGTTTTGCATAGCC; product 101 bp). These samples were measured in three separated runs using the following protocol 5 min 96°C, 45× (10 s 95°C, 20 s 58°C, 20 s 72°C).
Publication 2009
5-nitro-2-(3-phenylpropylamino)benzoic acid Chickens EEF1A1 protein, human Heart Huntington Disease Oligonucleotide Primers PSMB5 protein, human SYBR Green I Technique, Dilution
Total RNA was isolated from mouse hearts using the RNeasy isolation kit (Qiagen) 2 weeks after infarction. Expression of selected cardiac markers, i.e. Nppa, Nppb, Myh6, Mhy7, Col1a, Postn, and Tgfb1, was determined in sham-operated and infarcted heart samples. Four samples in each group were selected for RNA-sequencing based on expected patterns of gene expression known to be representative of normal vs. pathological hearts, i.e. significant increased expression of Nppa, Nppb, Mhy7, Col1a, Postn, and Tgfb1, and decreased expression of Myh6 in infarcted heart when compared with sham-operated hearts. Samples were also selected on echocardiographic parameters, in particular control hearts demonstrated normal ejection fraction (EF) (>45%), whereas infarcted heart showed decreased EF (<15%).
Publication 2014
5-nitro-2-(3-phenylpropylamino)benzoic acid Echocardiography Gene Expression Heart isolation Mice, Laboratory NPPA protein, human TGFB1 protein, human
We utilized iCell Cardiomyocytes (iCell-CMs) derived from human iPSCs to characterize miRNA and mRNA expression patterns (Cellular Dynamics International, CDI). These cardiomyocytes are a highly pure ventricular population established as having functional properties similar to adult human cardiomyocytes [8] (link). All iCell-CMs were obtained from one single batch of cells. iCell Cardiomyocytes were plated at 2.0×104 cells/well in a 96-well plate precoated with 0.1% gelatin solution. Several dose response and time course experiments were performed on these cells to determine the optimal ET-1 dosage, recovery and stimulation time that would give the maximum hypertrophic response. Figure 1a represents a dose vs. response plot for NPPB expression using relative quantification (RT-qPCR). After two days of recovery, the cells were cultured in William’s E medium supplemented with Cocktail B (1∶25) from the Hepatocyte Maintenance Supplement Pack (Life Technologies). After an additional 11 days of recovery, cells were stimulated for 18 h with ET-1 (Sigma Aldrich) at 10−8 M as recommended by the manufacturer. Experiments were performed in triplicate for both unstimulated controls (control-CM) and ET-1 stimulated cells (ET1-CM).
Publication 2014
5-nitro-2-(3-phenylpropylamino)benzoic acid Adult Cells Culture Media Dietary Supplements Gelatins Heart Ventricle Hepatocyte Homo sapiens Hypertrophy Induced Pluripotent Stem Cells MicroRNAs Myocytes, Cardiac RNA, Messenger
Macrophages (~1× 105 cells), attached to glass coverslips precoated with Cell Tak (BD scientific laboratories, San Jose, CA), were incubated for 30 min at 37°C with N-[ethoxycarbonylmethyl]-6-methoxy-quinolinium bromide (MQAE-30mM) (17 (link)). MQAE (Invitrogen, Carlsbad, CA) is a Cl sensitive fluorescent indicator dye that measures increases in Cl concentration via a quenching mechanism. Reductions in cell Cl give increases in fluorescent intensity indicative of decreased cytosolic Cl concentration (18 (link)). Dye loading and subsequent experimentation were performed in a custom perfusion chamber mounted on an Olympus IX-71 inverted microscope (19 (link)). MQAE was excited at 354 ± 10 nm and emitted fluorescent light was measured at 460 ± 10 nm every 5s using a charge coupled device camera attached to a digital imaging system (20 (link), 21 (link)). Typically, 10–20 macrophages were monitored simultaneously for each experiment. The rate of change in MQAE fluorescence (Δarbitrary fluorescent units (AFU)/Δtime(s)) was used to calculate Cl efflux.
Initially macrophages were perfused at 3–4 ml/min with Cl-containing solution (135 mM NaCl, 5mM KCl, 1 mM CaCl2, 1.2 mM MgSO4, 2mM NaH2PO4, 2mM HEPES, 10mM glucose or previously described (20 (link))) to allow for removal of extraneous dye. Following the initial perfusion with Cl-containing buffer, the perfusate was changed to a Cl-free solution (135 mM NaCyclamate, 3mM KGluconate, 0.5 mM CaCyclamate, 1.2 mM MgSO4, 2mM KH2PO4, 2mM HEPES, 10mM Glucose or previously described (20 (link))) in which Cl was substituted with cyclamate. In a subset of experiments the loading of MQAE was assessed by exposing cells to a final perfusion solution containing potassium thiocyanate (KSCN) (150 mM KSCN, 0.5 mM CaCyclamate, 1.2 mM MgSO4, 2mM KH2PO4, 2mM HEPES, 10mM Glucose) with Nigericin (10 µM) to measure the minimum specific fluorescence of the cells (20 (link)). The control Cl-free solution, contained 0.5mM Ca2+, which is within the normal range for extracellular Ca2+ concentrations (22 (link)–25 (link)). The high Ca2+/Cl-free solution had a Ca2+ concentration of 2mM, which can be found in tracheobronchial secretions (26 (link), 27 (link)). Macrophages were assessed in a low Ca2+ (0.1mM)/Cl-free solution for comparison. To ensure that the extracellular Ca2+ concentrations did not affect cell viability, assays were performed with Trypan blue in each experimental solution demonstrating ≥90% viability. Solutions were adjusted to a final pH of 7.4 at 37°C and an osmolarity of 300mOsmol.
To confirm the presence of Cl movement, macrophages were assessed in the presence of 5-Nitro-2-(3-phenylpropylamino)benzoic acid (NPPB-100 µM), a broad inhibitor of Cl channels (28 (link)), as cells transitioned from Cl-containing to Cl-free solutions. The contribution of CFTR to total Cl flux was evaluated in the presence of the CFTR-specific inhibitor, cftrinh-172 (20µM). Macrophages were treated for 2 min with cftrinh-172 in the Cl-containing solution, prior to assessing Cl efflux in the control Cl-free solution with cftrinh-172 still present. Rates of Cl efflux following treatment with either inhibitor were compared with rates of Cl efflux observed in the absence of the inhibitors. Vehicles alone (ethanol or DMSO) had no effect on efflux.
The effect of increasing intracellular Ca2+ concentrations on Cl efflux were assessed indirectly following treatment with either carbachol or thapsigargin. Macrophages were treated with carbachol (100 µM) for 30 min, while loading with MQAE (29 (link)). Alternatively, macrophages were assessed following treatment with thapsigargin (1 µM) for 2 min in Cl-containing solution prior to assessment in Cl-free solution. Following treatment with either agent, Cl efflux was assessed in either low Ca2+/Cl-free solution with addition of EGTA (1mM) or in the control solution. Chemicals were purchased from Sigma Corporation unless specified.
Publication 2011
5-nitro-2-(3-phenylpropylamino)benzoic acid Benzoic Acid Biological Assay Bromides Buffers Carbachol Cell-Tak Cells Cell Survival Cyclamate Cystic Fibrosis Transmembrane Conductance Regulator Cytosol Egtazic Acid Ethanol Fingers Fluorescence Fluorescent Dyes Glucose HEPES inhibitors Light Macrophage Medical Devices Microscopy Movement Nigericin Osmolarity Perfusion potassium thiocyanate Protoplasm Secretions, Bodily Sodium Chloride Sulfate, Magnesium Sulfoxide, Dimethyl Thapsigargin Trypan Blue
Tissue was collected from 5 to 8 C57/B6 male and female mice in accordance with UK Home Office Guidelines (PPL70/6965), placed into either a 1.5 mL Eppendorf tube or foil (brain and heart tissue) and snap frozen in liquid nitrogen. Total RNA was extracted from primary mouse tissue (cardiac ventricle, adrenal, adipose, brain, pituitary, kidney, liver and testis), or from cultured αT3-1 or LβT2 cells, using RNAbee reagent, and subjected to DNase treatment (Qiagen, Poole, UK), as described previously [8 (link)]. RNA concentrations were determined using ND-100 spectrophotometer (Nanodrop, Thermo Fisher, Hemel Hempstead, UK). Two customised GeXP multiplex assays were designed, to detect natriuretic peptide gene targets (Nppa, Nppb, Nppc, Npr1, Npr2, Npr3, Corin and Furin), or gonadotrope transcription factor genes (Nr5A1, Nr0B1, cJun, cFos and Egr1) (Table S1). In all assays, 100 ng of total RNA was used per sample. Target-specific reverse transcription and PCR amplification was performed as previously described [36 (link)] and in accordance with manufacturer’s instructions (Beckman Coulter, High Wycombe, UK). In brief, a master mix was prepared for reverse transcription reactions as detailed in the GeXP Starter Kit (AB Sciex, Warrington, Cheshire, UK), and performed using a G-Storm GS1 thermal cycler, using the programme protocol: 48 °C for 1 min, 42 °C for 60 min, and 95 °C for 5 min. From this, an aliquot of each reverse transcription reaction was added to PCR master mix containing GenomeLab kit PCR master mix (AB Sciex, Warrington, Cheshire, UK), and Thermoscientific Thermo-Start Taq DNA polymerase (Thermo Fisher; AB Sciex, Warrington, Cheshire, UK). PCR reaction was performed using a 95 °C activation step for 10 mins, followed by 35 cycles of 94 °C for 30 s, 55 °C for 30 secs and 70 °C for 60 secs. Products were separated and quantified using the GeXP CEQTM 8000 Genetic Analysis System AB Sciex, Warrington, Cheshire, UK), and GenomeLab Fragment Analysis software (eXpress Analysis Version 1.0.25, Beckman Coulter, Inc.).
Publication 2019
4-nitrophenylphosphorylcholine 5-nitro-2-(3-phenylpropylamino)benzoic acid Altretamine Biological Assay Brain Cells Deoxyribonuclease I EGR1 protein, human Females Freezing Furin Genes Genitalia Gonadotrophs Heart Heart Ventricle Kidney Liver Males Mus Natriuretic Peptides Nitrogen NPPA protein, human NR5A1 protein, human Obesity Reproduction Reverse Transcription Taq Polymerase Testis Tissues Transcription Factor

Most recents protocols related to «5-nitro-2-(3-phenylpropylamino)benzoic acid»

Total RNA was extracted from heart tissue using TRIzol reagent (Cat No. 15596018, Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s instruction. First, 1 μg of total RNA was reverse-transcribed to complementary DNA using the PrimeScript™ RT Master Mix kit (Cat No. RR036A, Takara, Osaka, Japan) in accordance with the manufacturer’s instructions. The reaction of PCR was performed with a CFX96 Real-Time System (Version: 4.1.2433.1219; Bio-Rad, Hercules, CA, USA) and TB Green Premix Ex Taq II (Tli RNaseH Plus) (Cat No. RR820A, Takara, Osaka, Japan) with specific primers. The following primers (5′-3′) were used. GAPDH: forward, AGGTCGGTGTGAACGGATTTG; reverse, TGTAGACCATGTAGTTGAGGTCA. Caspase3: forward, GAGCTTGGAACGGTACGCTA; reverse, GAGTCCACTGACTTGCTCCC. Nppa: forward, GAGGAGAAGATGCCGGTAGA; reverse, AGCCCTCAGTTTGCTTTT. Nppb: forward, GCCAGTCTCCAGAGCAATTC; reverse, TCCGATCCGGTCTATCTTGT. Myh7: forward, AGATGGCTGGTTTGGATGAG; reverse, CGCACTTTCTTCTCCTGCTC. Col1a1: forward, AGAGCATGACCGATGGATTC; reverse, CCTTCTTGAGGTTGCCAGTC. Col3a1: forward, CGTAAGCACTGGTGGACAGA; reverse, CGGCTGGAAAGAAGTCTGAG. Tgfb: forward, CAACAATTCCTGGCGATACC; reverse, GAACCCGTTGATGTCCACTT. PTGS2: forward, CTGCGCCTTTTCAAGGATGG; reverse, GGGGATACACCTCTCCA CCA. Real-time PCR reactions were amplified at 95 °C for 30 s and 60 °C for 30 s for 40 cycles, following an initial denaturation step at 95 °C for 3 min. Relative gene expression was calculated by 2−ΔΔCT method, using GAPDH as a housekeeping control. Results were represented as fold change by normalizing to control groups.
Publication 2023
5-nitro-2-(3-phenylpropylamino)benzoic acid Caspase 3 DNA, Complementary GAPDH protein, human Gene Expression Heart N-propionylprocainamide Oligonucleotide Primers PTGS2 protein, human Tissues trizol
To obtain high-resolution clusters within the DRG neuron subset in all species-specific data, we first removed all non-neuronal nuclei barcodes, and then nuclei that express any satellite glial specific transcripts (Plp1 < 1 & Mpz < 1 & Sparc < 1) were removed. The resulting digital gene-expression matrix (DGE) was carried forward for clustering.
We annotated different subsets of large diameter myelinated A-LTMRs using Nefh, Slc17a7, Pvalb, Spp1, Calb1, Ntrk3, Scn5a, Ntrk2, Necab2, Cntnap2, and Fam19a1. Non-peptidergic C-fiber nociceptors(NPs) subsets were annotated using Gfra1, Gfra2, Trpc3, Lpar3, Mrgpra3, Mrgprd, Sst, Il31ra, Nppb, Trpv1, Trpa1, Ret, Scn10a, Scn11a, P2rx3, and Plxnc1. C-fiber peptidergic nociceptors (PEPs) subsets were annotated using Tac1, Adcyap1, Gal, Kit, Calca, Ntrk1, Trpa1, Scn10a, and Scn11a. Cold thermoreceptor subsets were annotated using Trpm8, Tac1, Foxp2, Cdh8, Penk, and Piezo2. Finally, C-LTMRs were annotated using Th, Slc17a8, Fam19a4, P2ry1, Gfra2, Piezo2, and Zfp521/ZNF521.
To avoid having one species dominate the downstream analyses including integration and to account for potential differences in each species’ clustering resolution, we downsampled the number of nuclei to have similar numbers across species at each DRG subtype cluster (e.g., A-LTMRs, PEPs, NPs, C-LTMRs) using the ‘downsample’ argument in the ‘subset()’ function of SeuratV3. These downsampled DGEs were used for cross-species cell-type mapping analyses including MetaNeighbor and Integration.
Publication 2023
5-nitro-2-(3-phenylpropylamino)benzoic acid Cell Nucleus Cells C Fibers CNTNAP2 protein, human Cold Temperature Fingers Gene Expression GFRA2 protein, human NEFH protein, human Neurons Nociceptors PTPN22 protein, human Satellite Glia SPARC protein, human SPP1 protein, human Thermoreceptors tropomyosin-related kinase-B, human
About 40 live embryos were collected after exposure, and several genes related to cardiovascular development were selected, including the transcription factors gata4, myc6, tbx5, nkx2.5, nppa (atrial natriuretic peptide), nppb (B-type natriuretic peptide), and the myosin heavy chains amhc and vmhc. Furthermore, gene expression related to zebrafish vascular system development was observed, e.g., gata1, vegfaa, and vegfab. The total RNA was extracted using RNAzol reagent following the protocol provided by the manufacturer. The qRT-PCR was performed using a commercial kit following the manufacturer’s instructions, and the experiment was performed in four replicates per sample (n = 40/sample). The expression of cardiovascular- and apoptosis-related genes was normalized with the relative expression of β-actin as an internal control. The sequence of each primer used for qRT-PCR is summarized in Table 1.
Publication 2023
5-nitro-2-(3-phenylpropylamino)benzoic acid Actins Apoptosis Atrial Natriuretic Factor Cardiovascular System Embryo GATA1 protein, human GATA4 protein, human Gene Expression Genes Hemic System Multiple Birth Offspring Myosin Heavy Chains Nesiritide NPPA protein, human Oligonucleotide Primers Zebrafish
For cDNA synthesis the Qiagen RT2 First Strand Kit (cat. no. 330401) was used. This kit provides a rapid and convenient procedure for efficient first strand cDNA synthesis. The cDNA was mixed with an appropriate RT2 SYBR® Green ROX Mastermix (cat. no. 330529). This mixture was aliquoted into the wells of the Custom RT2 Rat PCR Array (CLAR40805). PCR was performed on the ViiA 7 Real-Time PCR System (Thermo Scientific™, Waltham, MA, USA), and finally relative expression (for the following genes: Acsl4, Arhgap12, Ankib1, Atg16l1, Clock, Ets, Epha5, Fmr1, Jazf1, Mier3, Myh6, Myh7, Nppa, Nppb, Nr3c1, Pdgfra, Phtf2, Psd3, Tle4, Wasl, Zfpm2) normalized to housekeeping genes was determined using data from the real-time cycler and the 2−ΔCT method. Regarding the qPCR measurements, one sample from the ABHF group was excluded from data analysis due to technical issues.
Publication 2023
5-nitro-2-(3-phenylpropylamino)benzoic acid Anabolism DNA, Complementary EPHA5 protein, human Genes Genes, Housekeeping N-propionylprocainamide SYBR Green I TLE4 protein, human
Total RNA was prepared from mouse hearts using TRIzol (Invitrogen)43 (link). cDNA was generated using 300 ng total RNA and SuperScript III Reverse Transcriptase (ThermoFisher). Using Maxima SYBR Green qPCR master mix (Fermentas), real-time RT-PCR was performed under the following conditions: 94 °C for 10 min; 40 cycles of 94 °C for 15 s, 58 °C for 30 s, 72 °C for 30 s; and a final elongation at 72 °C for 15 min. Relative mRNA expression was determined by the ΔΔ-Ct method normalized to the ribosomal RNA (18S) level. The following oligonucleotide primers were used: NPPA, sense 5’-ATGGGCTCCTTCTCCATCAC-3’ and antisense 5′-ATCTTCGGTACCGGAAGCTG-3′; NPPB, sense 5′-AAGTCCTAGCCAGTCTCCAGA-3′ and antisense 5′-GAGCTGTCTCTGGGCCATTTC-3′; MYH7, sense 5′-GCCAACACCAACCTGTCCAAGTTC-3′ and antisense 5′- TGCAAAGGCTCCAGGTCTGAGGGC-3′; Rcan1.4, sense 5′-TCCAGCTTGGGCTTGACTGAG-3′ and antisense 5′- ACTGGAAGGTGGTGTCCTTGT-3′; 18 S rRNA, sense 5′-CGCGGTTCTATTTTGTTGGT-3′ and antisense 5′-AGTCGGCATCGTTTATGGTC-3′.
Publication 2023
5-nitro-2-(3-phenylpropylamino)benzoic acid DNA, Complementary Heart Mice, Laboratory NPPA protein, human Oligonucleotide Primers Real-Time Polymerase Chain Reaction Ribosomal RNA RNA, Messenger RNA-Directed DNA Polymerase SYBR Green I trizol

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TRIzol reagent is a monophasic solution of phenol, guanidine isothiocyanate, and other proprietary components designed for the isolation of total RNA, DNA, and proteins from a variety of biological samples. The reagent maintains the integrity of the RNA while disrupting cells and dissolving cell components.
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5-Nitro-2-(3-phenylpropylamino)benzoic acid (NPPB) is a chemical compound used in laboratory research. It has the molecular formula C16H16N2O3. NPPB is a white crystalline powder with a specific function in research applications.
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Bumetanide is a pharmaceutical compound used as a loop diuretic. It functions by inhibiting the Na-K-2Cl cotransporter in the thick ascending limb of the loop of Henle, leading to increased excretion of sodium, chloride, and water.

More about "5-nitro-2-(3-phenylpropylamino)benzoic acid"

5-nitro-2-(3-phenylpropylamino)benzoic acid, also known as NPPB, is a compound with a wide range of applications in scientific research.
This organic molecule has been studied for its potential uses in fields such as ion channel modulation, cell signaling pathways, and drug development.
One of the key aspects of working with 5-nitro-2-(3-phenylpropylamino)benzoic acid is the need for efficient and reliable experimental protocols.
PubCompare.ai's AI-driven protocol comparison tool can help researchers optimize their workflow by locating the best protocols from literature, preprints, and patents, and leveraging AI-powered comparisons to identify the most effective approaches.
When conducting experiments with 5-nitro-2-(3-phenylpropylamino)benzoic acid, researchers may also utilize related techniques and reagents, such as TRIzol for RNA extraction, the High-Capacity cDNA Reverse Transcription Kit or IScript cDNA synthesis kit for cDNA synthesis, and the StepOnePlus Real-Time PCR System or TaqMan probes for gene expression analysis.
The RNeasy Mini Kit and High Capacity RNA-to-cDNA Kit are also commonly used in this context.
Additionally, the diuretic drug Bumetanide, which is a NKCC1 cotransporter inhibitor, may be of interest when studying the physiological effects of 5-nitro-2-(3-phenylpropylamino)benzoic acid, as it can provide insights into ion channel regulation and cellular processes.
By leveraging the power of PubCompare.ai and incorporating a range of related techniques and reagents, researchers can streamline their 5-nitro-2-(3-phenylpropylamino)benzoic acid research and achieve better results with greater efficiency.