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Alcian Blue

Alcian Blue is a cationic stain used to detect acidic polysaccharides, such as glycosaminoglycans, in histological and cytological preparations.
It is commonly utilized in the analysis of extracellular matrix components, particularly in the study of cartilage, mucosubstances, and basement membranes.
Alcian Blue staining allows for the visualization and characterization of these important biological structures, providing valuable insights into tissue composition and function.
Researchers can optimize their Alcian Blue analysis protocols for reproducibility and accuracy using the AI-powered PubCompare.ai platform, which enables effortless comparison of relevant protocols from published literature, preprints, and patents.
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Most cited protocols related to «Alcian Blue»

Lungs removed from the chest cavity were fixed by injection of 4% buffered paraformaldehyde into the tracheal cannula at a pressure of 20 cm H2O and immersed in paraformaldehyde for 24 h. Lobes were sectioned sagitally, embedded in paraffin, cut into 5 μm sections, and stained with H&E for histological analysis. Additional sections were stained with alcian blue/PAS to identify mucus-containing cells. The severity of peribronchial inflammation was graded semiquantitatively for the following features: 0, normal; 1, few cells; 2, a ring of inflammatory cells 1 cell layer deep; 3, a ring of inflammatory cells 2–4 cells deep; 4, a ring of inflammatory cells of >4 cells deep. The numerical scores for the abundance of PAS-positive mucus-containing cell in each airway were determined as follows: 0, <0.5% PAS-positive cells; 1, 5–25%; 2, 25–50%; 3, 50–75%; 4, >75% (28 (link)).
Publication 2003
Alcian Blue Cannula Cells Goblet Cells Inflammation Lung Paraffin Embedding paraform Pressure Thoracic Cavity Trachea

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Publication 2010
Alcian Blue Antibodies Antral Atrophy BLOOD Brucella Enzyme-Linked Immunosorbent Assay Equus caballus Flow Cytometry Helicobacter pylori Hyperplasia Inflammation Interferon Type II Metaplasia Microscopy Paraffin Periodic Acid Real-Time Polymerase Chain Reaction Reverse Transcriptase Polymerase Chain Reaction Serum Stain, Giemsa Stomach Technique, Dilution Tissues
A total of 77 K-serotype Klebsiella reference strains purchased from Statens Serum Institute, Copenhagen, Denmark. An additional strain (A1517) of novel type KN1 was identified in a previous study from our laboratory [19] (link). Another eleven K. pneumoniae clinical isolates were obtained from Taiwanese and overseas clinical laboratories, including National Taiwan University Hospital (NTUH; Taipei, Taiwan), En Chu Kong Hospital (ECKH; Sansia, Taiwan), Far Eastern Memorial Hospital (FEMH; Banciao, Taiwan), Chang Gung Memorial Hospital (CGMH; Linkou, Taiwan), Department of Medical Microbiology, University of Manitoba (Winnipeg, MB, Canada), and Department of Clinical Microbiology, Kuopio University Hospital (Finland) [19] (link). Together, strains representing the 78 known capsular types were included for wzc sequencing.
Between 2004 and 2006, Twenty-nine strains were collected from the blood of patients admitted to NTUH with bacteremia. To evaluate the wzc typing system in typing strains with unknown capsular types, all of the 29 K. pneumoniae clinical isolates of unknown capsular type were screened by wzc sequencing.
A K. pneumoniae clinical isolate from NTUH, NTUH-K2044 (K1), and its isogenic mutants NTUH-K2044 ΔmagA (capsule deficient) and NTUH-K2044 ΔwbbO (O-antigen deficient) [32] (link) were used as controls for Alcian blue staining.
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Publication 2013
Alcian Blue Bacteremia Blood Capsule Clinical Laboratory Services Klebsiella Klebsiella pneumoniae O Antigens Patients Serum Strains
All in vivo experiments were performed on protocols approved by the University of Rochester Committee on Animal Resources. In the bioluminescent imaging (BLI) experiment, forty 8-10 week old female BALB/cJ mice (The Jackson Laboratory, Bar Harbor, ME) were randomized to placebo (PBS) or 1 mg of 1C11 mAb (40 mg/kg i.p.) one day prior to the surgery. Implant-associated osteomyelitis was induced in the right tibia of the mice by surgically implanting a stainless steel pin contaminated with Xen29 as previously described 42 (link). Mice were removed from either group if they died of anesthesia following surgery, during longitudinal BLI, or if a mouse removed its pin during the course of the 14-day experiment, leaving the placebo and 1C11 treatment groups at n=15 and n=17, respectively. BLI of all mice was performed on days 0, 3, 5, 7, 10 and 14 using the Xenogen IVIS Spectrum imaging system (Caliper Life Sciences, Hopkinton, MA), and the peak BLI on day 3 was quantified as previously described 42 (link). The effects of Gmd inhibition on the establishment of MRSA chronic osteomyelitis were assessed radiographic and histologically 14 days after infection using three cohorts. Mice (n= 5) were treated with PBS (Group 1 placebo) or with 40mg/kg of 1C11 (Group 2 anti-Gmd), and 24h later received a USA300 LAC infected transtibial pin. A third group of mice received an infected transtibial pin with delta-Gmd USA300 LAC (Group 3 delta-Gmd). The mice were euthanized on day 14 post-infection, and the tibiae were assessed by micro-CT, and processed for alcian blue hematoxylin /orange G (ABH/OG) and Brown and Brenn (Gram) staining and light microscopy, as previously described 43 (link).
Publication 2014
Alcian Blue Anesthesia Animals Hematoxylin Infection Light Microscopy Methicillin-Resistant Staphylococcus aureus Mice, House Operative Surgical Procedures Orange G Osteomyelitis Placebos Psychological Inhibition Radiography Stainless Steel Surgery, Day Tibia Woman X-Ray Microtomography
Since the larval exoskeleton is resistant to known fixative reagents, we performed an adequate fixation by injecting buffered formalin 10% with an insulin syringe in the last left proleg. The volume of solution injected, to have a turgid consistency of the larvae, was about 100 µL. Larvae were then stored at 4°C for 24 h, to fix internal organs and block melanization. Whole larvae were dissected transversally or sagittally into two halves by means of an anatomic pincers and by using a new lancet blade for each larva. The procedure was carefully performed to avoid the squeeze of the larval tissues. The two halves of larvae were placed in the same BioCassette and routinely processed in the path lab. For transversally sectioned larvae, each paraffin-embedded half was further sectioned into two/three rings, after cooling the larva at room temperature for a few minutes to harden the tissues. A crucial step to avoid the paraffin block rupture during microtome sectioning was to keep the cut larval tissues in hot paraffin for one hour to stabilize the inclusion, and to obtain a complete merge of the cut rings in the final paraffin block. Finally, four/six rings (one in the distal part, two in the middle, and one in the proximal part) were positioned in each paraffin-block. Histochemical staining on slides with serial tissue sections was then performed: haematoxylin and eosin (HE) was used to evaluate tissue morphology, periodic acid Schiff (PAS) and Grocott Methenamine staining (GMS) to highlight fungi localization and host interaction, Giemsa, Alcian blue at various pH (1, 2.5, and 3.1) to evaluate hemocytes, and Feulgen staining to evaluate DNA. All histo-chemical stainings were performed according to standard laboratory protocols.14 Sagittally sectioned larvae were routinely paraffin-embedded.13 A distance of 50 µm was maintained between serial 4-micron-thick tissue sections of the two halves, and the slides were stained with haematoxylin and eosin.
The microscopic visualization has been performed using a Leica Microscope DMLB, and the image acquisition with the NanoZoomer-XR C12000 series (Hamamatsu Photonics K.K., Tokio, Japan.).
Publication 2014
Alcian Blue Eosin Fixatives Formalin Fungi Hemocytes Insulin Larva Methenamine Microscopy Microtomy Paraffin Periodic Acid Sclerosis Stain, Giemsa Staining Syringes Tissues

Most recents protocols related to «Alcian Blue»

Example 1

We analysed candidate peptides from region A for their OA phenotype suppressive actions on primary OA articular chondrocytes in the presence of 20% (v/v) OA synovial fluid (SF). Data were combined from three individual OA chondrocyte isolates (n=3) that were each tested in triplicate. Seeded passage-2 OA chondrocytes were exposed to 100 nM of peptide in the absence or presence of OA synovial fluid and after 24 hours analysed for mRNA expression of genes COL10A1, ALP, RUNX2, COL2A1, ACAN, SOX9, COX-2, IL-6, PGE, MMP13 and ADAMTS5 (corrected for 28S rRNA expression and relative to control conditions (no peptide exposure)).

PGE2 secretion in culture supernatant was analysed by EIA and ALP enzyme activity was determined by an in-house developed colorimetric assay for ALP activity. GAG content was determined by colorimetric alcian blue assay.

Results were scored as + or − wherein + means that the peptide decreased the activity of genes COL10A1, ALP, RUNX2, COX-2, IL-6, PGE, MMP13 and ADAMTS5 or increased the activity of COL2A1, ACAN and SOX9. For ALP activity a + means a decreased activity and for GAG activity, a + means an increased activity,

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Patent 2024
Alcian Blue Biological Assay Bone Morphogenetic Protein 7 Chondrocyte Colorimetry Dinoprostone enzyme activity Gene Expression Genes Joints MMP13 protein, human Peptides Phenotype PTGS2 protein, human RNA, Messenger RNA, Ribosomal, 28S RUNX2 protein, human secretion SOX9 protein, human Synovial Fluid
The colonic segments were fixed in Methanol-Carnoy solution (methanol: chloroform: glacial acetic acid = 6:3:1), paraffin embedded and cut into serial 4 μm sections. Then, goblet cell staining was performed via Alcian blue/periodic acid-Schiff staining according to the instructions. The pathologist, without knowledge of any experimental procedures, counted the number of goblet cells.
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Publication 2023
Acetic Acid Alcian Blue Chloroform Colon Goblet Cells methacarn Methanol Paraffin Pathologists Periodic Acid
Impact of TP at 10-8 M concentration on the characteristic features of BM-MSCs were determined by investigating cell surface markers and by evaluating BM-MSCs’ differentiation capacities. For immunophenotyping, 2x105 BM-MSCs were seeded into 6-well tissue culture plates as triplicates, incubated in the presence of 10-8 M TP for 24 hours followed by collecting cells with trypsinization and labeling with antibodies abovementioned. Cells were immediately read with Beckman Coulter DxFLEX flow cytometry system and analysis was performed on CytExpert software. For evaluation of BM-MSCs’ differentiation capacities, 1x104 BM-MSCs were seeded into 96-well cell culture plates and once they reached 80% confluency, differentiation was initiated by commercial chondrogenesis (Thermo Fisher Scientific, #A1007101), osteogenesis (Thermo Fisher Scientific #A1007201), and adipogenesis (Thermo Fisher Scientific, #A1007001) kits, either supplemented with 10-8 M TP or not. Differentiation media were replaced twice a week. On the 21st day of differentiation, cells were fixed with 10% neutral-buffered formalin solution. Chondrogenesis, osteogenesis, and adipogenesis were evaluated by Alcian Blue, Alizarin Red, and Oil Red-O staining, respectively.
Publication 2023
Adipogenesis Alcian Blue Antibodies Cell Culture Techniques Cells Chondrogenesis Flow Cytometry Formalin Osteogenesis Tissues
Animals were euthanized with an overdose of sodium pentobarbital (100 mg/kg, intraperitoneally) after in vivo hemodynamic measurement, and then were rapidly perfused via inferior vena cava with precooled physiological saline for 5 min. The hearts were quickly removed, sectioned, and prepared for paraffin embedding and cryo-section. Routine staining techniques in paraffin embedded tissue (7-µm) included hematoxylin and eosin (H&E) staining (25˚C, 15 min) and Masson's trichrome staining for evaluating interstitial collagen deposition. Tetraethyl rhodamine isothiocyanate-conjugated wheat germ agglutinin (Invitrogen; Thermo Fisher Scientific, Inc.) plus 4,6-diamidino-2-phenylindole (DAPI; 5 mg/ml; Vector Laboratories, Inc.) staining was used to measure cardiomyocyte cross-sectional area, which was examined with a fluorescent microscope (80i; Nikon Corporation) as previously described by the authors (13 (link)). All image analysis was performed in a blinded manner by Image Pro Plus (version 4.5; Media Cybernetics, Inc.).
For detecting lipid droplet, Oil Red O staining was used in cryo-sectioned heart tissue (10 µm), and the sections were fixed with 10% buffered formalin (25˚C, 24 h) and stained with Oil Red O working solution (25˚C, 30 min). Hematoxylin was used for counterstaining. The perirenal adipose tissue was removed and smeared over a slide serving as the positive controls. For detecting sulfated proteoglycans, paraffin-embedded sections were stained with toluidine blue. Alcian blue/periodic acid-Schiff (AB-PAS) was used in paraffin-embedded sections to detect acidic sulfated mucins (AB positive), O-glycosides (PAS positive) and sialic acid (PAS positive) as previously described (14 (link)).
Transmission electron microscopy was performed for evaluating myocardial ultrastructure. Briefly, the samples from LV were fixed in 2.5% glutaraldehyde in 0.1 M phosphate buffer (pH 7.2; 4˚C, 24 h), post-fixed in 1.0% OsO4, dehydrated in alcohol and acetone solution, embedded in Epon812, sectioned with LKB ultramicrotome, and stained with uranyl acetate followed by lead citrate, then observed with a transmission electron microscope.
Publication 2023
Acetone Acids Alcian Blue Animals Buffers Citrates Cloning Vectors Collagen Cryoultramicrotomy DAPI Drug Overdose Eosin Ethanol Formalin Glutaral Glycosides Heart Hematoxylin Hemodynamics Lipid Droplet Microscopy Mucins Myocardium Myocytes, Cardiac N-Acetylneuraminic Acid Paraffin Paraffin Embedding Pentobarbital Sodium Periodic Acid Phosphates physiology Proteoglycan rhodamine isothiocyanate Saline Solution Tissue, Adipose Tissues Tolonium Chloride Transmission Electron Microscopy Ultramicrotomy uranyl acetate Vena Cavas, Inferior Wheat Germ Agglutinins
Mice were sacrificed at the end of the experiment. Parts of the colons were fixed in 4% paraformaldehyde cleared in xylene, embedded in paraffin, and cut into 5 mm thick slices. The histopathological performance of colon tissue was stained with hematoxylin-eosin (HE). Furthermore, the mucous cells in the colon were stained with Alcian blue/periodic acid-Schiff (AB/PAS). All experiment processes were performed according to the manufacturer's instructions.
Publication 2023
Alcian Blue Colon Eosin Mucus Mus Paraffin Embedding paraform Periodic Acid Tissues Xylene

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Alcian blue is a staining dye used in histology and microscopy to detect the presence of acidic polysaccharides, such as glycosaminoglycans, in biological samples. It has a high affinity for sulfated and carboxylated molecules, enabling the visualization of specific tissue structures and cellular components.
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Alcian Blue 8GX is a laboratory stain used in histology and cytology to detect and visualize acidic polysaccharides, such as glycosaminoglycans, in biological samples. It is a blue cationic dye that binds to negatively charged carboxyl and sulfate groups in the sample.
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Alizarin Red S is a chemical compound used as a dye and a stain in laboratory procedures. It is a red-orange powder that is soluble in water and alcohol. Alizarin Red S is commonly used to stain calcium deposits in histological samples, such as bone and cartilage.
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Alizarin Red is a laboratory reagent used for the detection and quantitative analysis of calcium in various samples. It is a bright red organic compound that forms a complex with calcium ions, resulting in a distinctive red-colored product. Alizarin Red is commonly employed in histochemical and biochemical applications to stain calcium-containing structures.
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Oil Red O is a fat-soluble dye used in histology and cell biology for the staining of neutral lipids, such as triglycerides and cholesterol esters. It is a useful tool for the identification and visualization of lipid-rich structures in cells and tissues.
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Alcian blue solution is a laboratory reagent used for the staining and visualization of acidic polysaccharides, such as glycosaminoglycans, in histological and cytological preparations. It serves as a tool for the identification and characterization of these molecules in various biological samples.
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