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Alkanes

Alkanes are a class of saturated hydrocarbons with the general formula CnH2n+2.
They are the simplest organic compounds and are found in natural gas, petroleum, and other fossil fuels.
Alkanes have a wide range of applications, including as fuels, solvents, and chemical feedstocks.
They are also important intermediates in the synthesis of more complex organic compounds.
The study of alkanes is crucial for understanding energy production, enviromental impact, and industrial processes.
Reseacrhers can use PubCompare.ai to optimize their alkane research protocols, enhance reproducibility, and identify the best methods and products through AI-driven literature comparison.

Most cited protocols related to «Alkanes»

All simulations were performed
in the isothermal–isobaric ensemble, NPT,
at a pressure of 1 atm. The pressure was held constant by using the
Parrinello–Rahman barostat77 with
a coupling constant of 10.0 ps with an isothermal compressibility
of 4.5 × 10–5 bar–1. For
the bulk liquids an isotropic pressure coupling was used and for the
bilayer simulations a semi-isotropic pressure coupling scheme was
used. The temperature was kept constant by the Nosé–Hoover
thermostat78 ,79 (link) with a coupling constant of 0.5 ps. The
lipid bilayer and water were coupled separately to the thermostat.
Long-range electrostatic interactions were treated by a particle-mesh
Ewald scheme80 ,81 with a real-space cutoff at 1.4
nm with a Fourier spacing of 0.10 nm and a fourth-order interpolation
to the Ewald mesh. Single-atom charge groups were used. van der Waals
interactions were truncated at 1.5 nm and treated with a switch function
from 1.4 nm. Long-range corrections for the potential and pressure
were added.51 The inclusion of long-range
corrections should eliminate the LJ cutoff dependency in the simulations.
Due to the fact that lipid bilayers are inhomogeneous systems the
method introduced by Lagüe et al.82 to add long-range corrections could be applied instead. Periodic
boundary conditions were imposed in every dimension. A time step of
2 fs was used with a Leap-Frog integrator. The LINCS algorithm83 was used to freeze all covalent bonds in the
lipid, and the analytical SETTLE84 method
was used to hold the bonds and angle in water constant. The TIP3P
water model85 was the water model of choice.
The choice of water model can be explained by the fact that TIP3P
is the default water model in major FFs such as AMBER and CHARMM and
since one of the aims of the work presented here was to create a lipid
FF compatible with AMBER this was a natural choice. Further, earlier
work of Högberg et al.31 (link) has shown
that there is flexibility in the choice of water model for AA simulations
of lipid bilayers. Atomic coordinates were saved every 1 ps and the
neighbor list was updated every 10th step.
Bulk liquids were
simulated with a simulation box consisting of 128 molecules for the
larger alkanes and 256 for the smaller alkanes (hexane and heptane)
at a temperature of 298.15 K. The lipid bilayer systems were prepared
using the CHARMM-GUI86 (link),87 (link) with 128 lipids in total, 64
in each leaflet. In order to achieve proper hydration, 30 TIP3P water
molecules were added per lipid. Three different lipid types were simulated,
DLPC (12:0/12:0), DMPC (14:0/14:0), and DPPC (16:0/16:0). These system
were investigated under a range of temperatures; see Table 1 for an overview of all simulations performed. All
lipid bilayer systems were equilibrated for 40 ns before production
runs were initiated which lasted for 300–500 ns. All MD simulations
were performed with the Gromacs88 software
package (versions 4.5.3 and 4.5.4). All analysis were made with the
analysis tools that come with the MDynaMix software package.89 System snapshots were rendered and analyzed
with VMD.90 Neutron scattering form factors
were computed with the SIMtoEXP software.91 (link)The calculations of free energies of solvation in
water and cyclohexane
were performed by using thermodynamic integration over 35 λ
values in the range between 0 and 1. A soft core potential (SCP) was
used to avoid singularities when the solute is almost decoupled from
the solvent. The α-parameters used for the SCP and the simulation
workflow were set following the methodology described by Sapay and
Tieleman.92 (link) The amino acid analogues were
solvated with 512 and 1536 molecules of cyclohexane and water, respectively.
Publication 2012
Alkanes Amber Amino Acids ARID1A protein, human Cyclohexane Dietary Fiber Dimyristoylphosphatidylcholine Electrostatics Freezing Heptane Lipid Bilayers Lipids Maritally Unattached n-hexane Natural Selection Pressure Rana Solvents
For feces samples, the extraction procedures were performed at 4 °C to protect the volatile SCFAs. A total of 1000 µL of 0.005 M aqueous NaOH containing IS (5 µg mL−1 caproic acid-d3) was added to feces samples (50–150 mg), and the sample was homogenized for 10 min and centrifuged at 13,200 g at 4 °C for 20 min. A 500-µL aliquot of supernatant fecal water was transferred into a 10 mL Corning disposable glass centrifuge tube, and 300 µL of water was added to this aliquot. For urine and plasma samples, 300 µL of each sample and 500 µL of 0.005 M aqueous NaOH containing IS (5 µg mL−1 caproic acid-d3) were mixed in a 10-mL glass centrifuge tube.
An aliquot of 500-µL PrOH/Py mixture solvent (3:2, v/v) and 100 µL of PCF were subsequently added to the glass tube and were vortexed briefly. Then, the derivatization reaction proceeded under ultrasonication for 1 min. After derivatization, the derivatives were extracted by a two-step extraction with hexane. An aliquot of 300-µL hexane was added to the reaction mixture and the sample was vortexed for 1 min followed by centrifugation at 2,000 g for 5 min. An aliquot of 300-µL derivative extraction (upper hexane layer) was transferred to a sampling vial. The extraction procedure was then repeated by adding 200 µL of hexane instead of 300 µL hexane to the reaction mixture. Another 200-µL aliquot of derivative extraction was transferred to the sampling vial with the first extraction. An aliquot of 10-µL n-alkane series was added, serving as the retention index and quality control. Anhydrous sodium sulfate (~10 mg) was added to remove traces of water from hexane. The resultant mixture was briefly vortexed prior to GC-MS analysis.
Publication 2013
Alkanes Centrifugation derivatives Diarrhea Feces Gas Chromatography-Mass Spectrometry hexanoic acid n-hexane Plasma Retention (Psychology) sodium sulfate Solvents Urine
Left-handed helices are very rare in peptides and proteins due to the steric clash between amino acid side-chains and the bulkier CO groups than the NH group in the case of common, right-handed helices. Though present in both models (Supplementary Fig. 17), such steric effect is weaker in the C36 FF compared to the C22/CMAP FF, because of the inclusion of refined Lennard-Jones (LJ) parameters for aliphatic carbon atoms in the C36 FF that give improved condensed phase properties of alkanes.21 Specifically, the van der Waals (vdW) radius of alanine Cβ atoms changed from 2.06 Å in C22/CMAP to 2.04 Å in C36, for the Cβ atoms in Ile, Thr and Val from 2.275 Å to 2.0 Å, and for the Cβ atoms in the remaining non-Gly, non-Pro amino acids from 2.175 Å to 2.01 Å. Notably, these changes also represent improved treatment in the FF of intramolecular interactions, as the CMAP corrections to the original C22 FF contains large negative values in the αL region to take into account that the steric clash disfavoring αL was overestimated due to the larger vdW radii. As improved LJ parameters were adopted in the C36 FF, a decrease in the contribution of the CMAP correction that favors αL was needed. However, as the original C36 CMAP (Supplementary Fig. 17) has the same CMAP potential in the αL region as C22/CMAP, oversampling of the αL region occurs, requiring the present additional refinement and subsequent validation of the model.
Publication 2016
Alanine Alkanes Amino Acids Carbon Dietary Fiber Helix (Snails) Peptides Proteins Radius
DT training was performed separately for each considered structural feature. For this procedure, the mass spectral compendium of the GMD was divided into those mass spectra associated with metabolites containing the respective structural feature and those in which the structural feature was absent. DT training was performed with and without using the RI information linked to each MST. In order to use the RI information, a subset of training data with empirically determined RIs was created. The supported RI models are based on standardization by 9 n-alkanes (C10–C36) and either a 5%-phenyl-95%-dimethylpolysiloxane capillary column, in short VAR5, or a 35%-phenyl-65%-dimethylpolysiloxane column (MDN35, Lisec et al. 2006 (link)). RI information of 8 variant VAR5 chromatography methods was converted according to Strehmel et al. (2008 (link)).
Publication 2010
Alkanes Capillaries Chromatography Dimethylpolysiloxanes Mass Spectrometry
For GC–MS analysis a protocol according to Weckwerth et al. was used (Weckwerth et al. 2004 (link)). Deep frozen plant material was ground to a fine powder using a mortar and pestle under constant adding of liquid nitrogen. About 45 mg of each replicate was transferred to pre-cooled reaction tubes. For the extraction process, 1 ml of ice cold extraction mixture (methanol:chloroform:water, 5:2:1, v:v:v) was subsequently added. Additionally, 10 μl of internal 13C6-Sorbitol standard were added into each tube. Tubes were vortexed for several seconds and incubated on ice for 8 min to achieve a good extraction. Hereupon, the samples were centrifuged for 4 min at 14,000×g, separating the soluble compounds from remaining cell structure components. For phase separation, the supernatant was then carried over into a new tube containing 500 μl deionized water and 200 μl chloroform. After 2 min of centrifugation at 14,000×g, the water/methanol phase, containing the polar metabolites, was separated from the subjacent chloroform phase and completely dried out overnight.
Samples were derivatised by dissolving the dried pellet in 20 μl of a 40 mg methoxyamine hydrochloride per 1 ml pyridine solution and incubation on a thermoshaker at 30 °C for 90 min. After adding of 80 μL of N-methyl-N-trimethylsilyltrifluoroacetamid (MSTFA), the mixture was again incubated at 37 °C for 30 min with strong shaking.
A solution of even-numbered alkanes (Decane C10, Dodecane C12, Tetradecane C14, Hexadecane C16, Octadecane C18, Eicosane C20, Docosane C22, Tetracosane C24, Hexacosane C26, Octacosane C28, Triacontane C30, Dotriacontane C32, Tetratriacontane C34, Hexatriacontane C36, Octatriacontane C38, Tetracontane C40) was spiked into the derivatized sample before GC–MS analysis in order to infer the retention time and create the retention index.
For LC–MS analysis, frozen plant leaf material was ground as for GC–MS sample preparation, followed by addition of 1 ml pre-chilled 80/20 v:v MeOH/H2O extraction solution containing each 1 μg of the internal standards Ampicillin and Chloramphenicol per 50 mg of fresh weight. Samples were hereupon centrifuged at 15,000×g for 15 min and the supernatant was placed into a new tube and completely dried out overnight. The resulting pellet was then dissolved in 100 μl of a 50/50 v:v MeOH/H2O solution and centrifuged again for 15 min at 20,000×g. The remaining supernatant was then filtered through a STAGE tip (Empore/Disk C18, diameter 47 mm) into a vial with a micro insert tip. Before analysis lipid components were removed by adding 500 µl of chloroform, centrifugation and separation of the non-polar-phase to avoid contamination of the ESI ion transfer capillary.
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Publication 2012
Alkanes Ampicillin Capillaries Cellular Structures Centrifugation Chloramphenicol Chloroform Cold Temperature decane DNA Replication docosane dotriacontane eicosane Empore Freezing Gas Chromatography-Mass Spectrometry hexadecane Lipids Methanol methoxyamine methoxyamine hydrochloride n-dodecane Neoplasm Metastasis Nitrogen octacosane octadecane octatriacontane PER1 protein, human Plant Leaves Plants Powder pyridine pyridine hydrochloride Retention (Psychology) Sorbitol Strains tetracosane tetradecane

Most recents protocols related to «Alkanes»

We collected volatiles from the leaves of the two morphotypes under the same growth conditions and ambient temperature, in biological triplicates. Approximately 100 g of dry leaves from the two morphotypes, were extracted with 1000 mL of reverse osmosis water using a Clevenger apparatus87 , following four hours of extraction by hydro-distillation. Samples of the essential oils extracted from the leaves were analyzed using gas chromatography with a flame ionization detector (GC-FID) (Shimadzu GC-2010 Plus) and gas chromatography coupled to mass spectrometry (GC–MS) (Shimadzu GCMS-QP2010 SE).
We conducted the analyses according to the following conditions: helium (He) as the carrier gas for both detectors, with the flow and linear speeds of 2.80 mL min−1 and 50.8 cm s−1 (GC-FID), and 1.98 mL min−1 and 50.9 cm s−1 (GC–MS), respectively; injection port temperature of 220 °C with a split ratio of 1:30; fused silica capillary column (30 m × 0.25 mm); stationary phase Rtx®-5MS (0.25 μm film thickness); oven with an initial temperature of 40 °C, maintained for 3 min, then gradually increased by 3 °C min−1 until 180 °C, where it remained for 10 min (total analysis time: 59.67 min); and FID and MS detector temperature of 240 °C and 200 °C, respectively49 (link). The used samples were taken from the vials in 1 μL of a solution containing 3% essential oil dissolved in hexane with 0.1 mol L−1 dimethylacetamide (DMA; external standard for reproducibility control).
The GC–MS analyses were performed using electron impact equipment with an impact energy of 70 eV, scanning speed of 1000, scanning interval of 0.50 fragments s−1, and fragments detected from 29 to 400 (m/z). The GC-FID analyses were carried out in a flame formed by H2 and atmospheric air at a temperature of 300 °C. Flow rates of 40 mL min−1 and 400 mL min−1 were used for H2 and air, respectively. Identification of the compounds in the essential oils was accomplished by comparing the obtained mass spectra with those available in the spectral library database (Wiley 7, NIST 05, and NIST 05 s) and retention indices (RI). To calculate the RIs, we used a mixture of saturated alkanes C7–C40 (Supelco-USA) and adjusted retention time of each compound, obtained by GC-FID. The values calculated for each compound were compared with those reported in literature88 –90 .
We calculated the relative percentage of each compound in the essential oil using the ratio between the integral area of the peaks and the total area of all sample constituents obtained via GC-FID analyses. The compounds with a relative area above 2% were identified and considered predominant if above 10%.
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Publication 2023
Alkanes Biopharmaceuticals Capillaries cDNA Library dimethylacetamide Distillation Electrons Flame Ionization Gas Chromatography Gas Chromatography-Mass Spectrometry Growth Disorders Helium Mass Spectrometry n-hexane Oils, Volatile Osmosis Retention (Psychology) Silicon Dioxide
The chemical composition of the essential oils of catnip and oregano was determined using a Shimadzu 2010 Plus Gas Chromatograph equipped with a TQ8040 Mass Spectrometer (Shimadzu Scientific, Somerset, NJ). A Restek SH-Rxi-5Sil MS 30 m × 250 μm × 0.25 μm column was used for chromatographic separation. Helium was used as the carrier gas with a column flow rate of 1 mL/min. 1 μL of sample was injected with a split ratio of 25 and the injection temperature was set to 250°C. The column oven temperature was set to 35°C and held at 35°C for 4 min. The temperature was then raised to 250°C at a rate of 20°C/min and held at 250°C for 1.25 min. For the MS parameters, the ion source and interface temperatures were set at 200°C and 250°C respectively. The detector voltage was 0.04 kV and had a threshold of 1000. The solvent cut time was 3.5 min. The fragments were scanned within a range of 45 m/z to 500 m/z. For compound identification, the mass spectra of the compounds were compared to the mass spectra of compounds in the following mass spectral libraries: NIST05.LIB, NIST05s.LIB, W10N14.lib, and W10N14R.lib. To further confirm the identity of the compounds, the mass spectra was compared to Kovats indices generated from a series of n-alkanes (C8-C18) and literature (Adams, 2007 ). Representative chromatograms and mass spectra of the major compound of catnip and oregano are presented as supplementary material (Supplementary Figures S1, S2).
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Publication 2023
Alkanes ARID1A protein, human chemical composition Chromatography Gas Chromatography Helium Mass Spectrometry Nepeta Oils, Volatile Origanum vulgare Solvents

(A) Examples of the isothermal nonlinearity parameter from the triple point to the normal melting point for saturated molecular liquids of different classes, where solid lines are point-wise thermodynamic values calculated explicitly with derivatives of the fundamental equations of state included in the NIST REFPROP30 (link), and the dashed lines are the average values defined as slopes of the linear fits of lines shown in (B). Liquids are marked by the same colours in both subpanels.

Figure 4A illustrates the comparison of the isothermal nonlinearity parameter k for some examples of molecular liquids belonging to different chemical classes: n-alkanes, i.e. linear hydrocarbons with different chain lengths, a highly branched isomer (2,3-dimethylbutane), typical aromatic and polar compounds (toluene and ethanol, respectively). The reference for the majority of curves is taken from the triple point to the normal boiling point along the saturation curve (that is, in principle, does not differ from values determined to the ambient pressure condition for thermodynamic parameters of the bulk liquid) are calculated directly from the definition given by Eq. (20).
The only exception is 2,3-dimethylbutane, for which the lower temperature limit is chosen at T=263.15K as was used for Table 1. This is connected with the properties of this branched compound, which exhibits a more complex behaviour in the region of low temperatures. The branched structure leads to specific oscillatory modes and this substance may exhibit metastability and glassy states after freezing53 (link) that is also reflected in the properties of a cooled liquid. Thus, we are limited by the temperature range, which is closer to room temperatures when such anomalies are absent. Similar behaviour is noted for other branched hydrocarbons, e.g. for 3-methylpentane as additionally illustrated in Supplementary Material.
Another feature worth discussing is the isothermal nonlinearity coefficient for n-pentane, which is equal (in the rounded variant) to kr=9.5 in Fig. 4A in contrast to kr=10 in Table 1. For this lower value, AADr=0.75% , max(RDr)=1.12% ( T<Tb) and AADr=0.43% , max(RDr)=0.86% ( T>Tb) for Bridgman’s isotherms that is significantly better than results listed in Table 1 and confirms the statement formulated above that one needs to consider temperatures closer to the triple point for liquids with low melting/boiling temperatures to assure validity of the solid-like molecular oscillations properties required by the phonon theory.
The corresponding partial derivatives and density included in Eq. (20) for these substances are substituted as provided by the NIST REFPROP30 (link) reference software from the fundamental equation of state. The values for the same source are also used to plot the dependencies (6) shown in Fig. 4B, which are sufficiently linear. The slopes of the linear fit lines of the latter are denoted in Fig. 4A as dashed straight lines and their roundings to either integer or half-integer values are dash-dotted straight lines. One can see that the latter are closer to the direct derivative-based curves, especially in the vicinity of the temperature range, for which the high-pressure density measurements are available. This supports the conclusion that such rounding having a physical background in the origin of Rao’s rule from the phonon theory of liquid thermodynamics in the quasi-harmonic approximation is plausible. In addition, such a check of linearity of the fit provides a criterion for the possibility to neglect by effects of anharmonicity and molecular diffusion, which may affect the isothermal nonlinearity parameter. Notably that the linearity in the double-logarithmic coordinates, i.e. the power-law dependence between the speed of sound and the density distinguishes liquids as more compressible substance from solids, for with such linearity fulfils between these quantities directly (Birch’s law).
It should be stressed also that the thermodynamic route of calculating k from the fundamental equation of state itself has the uncertainty about 5–7 % taking into account the uncertainty of the derivative quantities (note that the same is true also for the thermodynamic route of estimating the adiabatic nonlinearity parameter, see, for example, the discussion in Ref.54 (link)); thus, the difference between solid curved and straight dash-dotted lines bounded within this range in Fig. 4A does not principally affect this conclusion.
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Publication 2023
3-methylpentane Alkanes Betula Cold Temperature derivatives Dietary Fiber Diffusion Ethanol Genetic Background Hydrocarbons Isomerism pentane Physical Examination Pressure sodium polymetaphosphate Sound Toluene
In recent years, the electronic nose system developed in the laboratory has been widely used in the agricultural field (17 (link), 18 (link)). Based on these studies, the respiratory sample collection system in this paper was developed for diabetes detection, as shown in Fig. 1.

Physical view of electronic nose system.

The system consists of 32 commercial gas sensors and their target gases are shown in Table 1. The main component sensor of the electronic nose uses a metal oxide semiconductor sensor. Due to the diversity of respiratory gas composition in diabetic patients, such as ethanol (19 (link)), carbon monoxide (20 (link)), alkanes (21 (link)), and methyl nitrate (22 (link)), sensors of different measurement ranges and different companies are used. These different sensors can form a complementary array that can help identify the disease being studied. By calculating the cost of purchasing the corresponding equipment, we can see that the total cost is about $674. The volume is about 7728 cubic centimeters. Before using the detection device, put the electronic nose device into the fume hood first and allow the sensor to warm up for 30 min. Then, the gas to be measured was fed into the bionic chamber attached with a sensor through an air pump with a flow rate of 1.2 L/min. When the gas entered the chamber, the data were sampled immediately, and the collection time was 1 min. When one set of gas collection is completed, the air pump draws fresh air to clean the residual gas in the chamber for 3–5 min to restore the sensor to the baseline level before the next set of sampling.

Summary of the sensor array.

NumberThe gas sensorThe response characteristics
S1TGS2612Butane, methane, propane.
S2TGS2611Methane, natural gas
S3TGS2620Vapors of organic solvents, ethanol
S4TGS2603Gaseous air contaminants, trimethylamine, methyl thiol, etc.
S5TGS2602Gaseous air contaminants, VOCs, ammonia, hydrogen sulfide, etc.
S6TGS2610Propane, butane
S7TGS2600Gaseous air contaminants, hydrogen, alcohol, etc
S8GSBT11Formaldehyde, oluene, butyric acid, butane, hydrocarbons
S9MS1100Formaldehyde, toluene, xylene
S10MP135Hydrogen, alcohol, carbonic oxide
S11MP901Alcohol, smoke, formaldehyde, toluene, acetone, benzene
S12MP-9Carbonic oxide, methane
S13MP-3BAlcohol
S14MP-4Methane, natural gas, biogas
S15MP-5Liquefied petroleum gas
S16MP-2Propane, smoke
S17MP503Alcohol, smoke
S18MP801Benzene, toluene, formaldehyde, alcohol, smoke
S19MP905Benzene, toluene, formaldehyde, alcohol, smoke
S20MP402Methane, natural gas, biogas
S21WSP1110Nitrogen dioxide
S22WSP2110Toluene, benzene, formaldehyde, alcohol, etc.
S23WSP7110Sulfuretted hydrogen
S24MP-7Carbonic oxide
S25TGS2612Butane, methane, propane
S26TGS2611Methane, natural gas
S27TGS2620Vapors of organic solvents, combustible gases, methane, carbon monoxide, isobutane, hydrogen, ethanol
S28MP-3BAlcohol
S29MP702Ammonia gas
S30TGS2610Propane, butane
S31TGS2600Gaseous air contaminants, methane, carbon monoxide, isobutane, ethanol, hydrogen
S32TGS2618-COOButane, LP gas

Manufacturers: S1–S7, S25–S27, S30–S32 Figaro Engineering Inc, Minoh, Japan; S8 Orgam Technologies, Gwangju, Korea; S9–S24, S28–S29, Winsen Electronics Technology, Zhengzhou, China.

Publication 2023
Acetone Alkanes Ammonia Benzene butane Butyric Acid Carbon Cuboid Bone Diabetes Mellitus Ethanol Formaldehyde Gases Hydrogen Hydrogen Sulfide Isobutane Medical Devices Metals Methane methylmercaptan methyl nitrate Monoxide, Carbon Oxides Patients Petroleum Propane Respiratory Rate Respiratory System Smoke Solvents Specimen Collection Toluene trimethylamine
To extract and purify cofactor F430, Methanosarcina barkeri type strain (DSM 800) was cultured in a 10-L fermenter. Wet cells were sonicated with 1% formic acid on ice and supernatant was recovered by centrifugation (15,000 × g for 30 min). The supernatant was passed though Q sepharose fast-flow column that was pre-equilibrated with 50 mM tris-HCl buffer. F430 in the solution was concentrated in a C18 SPE column pre-equilibrated with 1% formic acid and eluted with methanol. The F430 fraction was further purified via two stages of liquid chromatography using Agilent 1260 HPLC equipped with a diode array detector and a fraction collector as following. The first HPLC purification was performed with Chromolith Semi Prep RP-18e (10 mm × 100 mm; Merck). Eluents were 100 mM NaClO4/HClO4 (pH 2.3) for A and acetonitrile for B. The gradient condition was 0% B at 0 min, 20% B until 2 min, then 27.3% B until 30 min at 1 mL/min of flow rate. The collected F430 fraction was desalted using a C18 SPE column under the same condition described above. The second purification was performed with Hypercarb (10 mm × 150 mm; Thermo Scientific). Eluents were HClO4aq (pH 1) for A and acetonitrile for B. The gradient condition was 0% B at 0 min, 30% B until 3 min, then 52.8% B until 70 min at 1 mL/min of flow rate. The collected F430 fraction was desalted using an Oasis HLB SPE column.
One μmol of purified F430, 0.2 µmol of methyl- and benzyl-viologen, 100 μmol of Ti(III)-citrate and methyl substrate were dissolved in previously degassed CAPS buffer solution (totally 10 mL) in a 30 mL glass vial and sealed with a butyl rubber stopper and an aluminum cap. The vial was standing at room temperature. Head space gas was periodically sampled for methane measurement using an HP 6890 GC equipped with a flame ionization detector. The compounds were separated with a PoraBOND Q column (25 m, 0.53 mm i.d., 10 μm film thickness; Agilent) using helium as the carrier gas at a flow rate of 8.5 mL/min. Initial oven temperature was 35°C and was heated to 190°C by 20°C/min. Injection was performed in split mode (split ratio 5:1). Concentration was determined by a C1–C4 alkane gas standard.
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Publication 2023
acetonitrile Alkanes Aluminum Benzyl Viologen Buffers butyl rubber Cells Centrifugation Citrates CREB3L1 protein, human Fermentors Flame Ionization formic acid Head Helium High-Performance Liquid Chromatographies Liquid Chromatography Methane Methanol Methanosarcina barkeri Sepharose Strains Tromethamine

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The HP-5MS capillary column is a gas chromatography column designed for a wide range of applications. It features a 5% phenyl-methylpolysiloxane stationary phase and is suitable for the separation and analysis of a variety of organic compounds.
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Methanol is a clear, colorless, and flammable liquid that is widely used in various industrial and laboratory applications. It serves as a solvent, fuel, and chemical intermediate. Methanol has a simple chemical formula of CH3OH and a boiling point of 64.7°C. It is a versatile compound that is widely used in the production of other chemicals, as well as in the fuel industry.
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The GCMS-QP2010 Ultra is a gas chromatograph-mass spectrometer (GC-MS) system manufactured by Shimadzu. It is designed to perform high-performance qualitative and quantitative analysis of complex samples. The system combines a gas chromatograph with a triple quadrupole mass spectrometer, providing advanced analytical capabilities for a wide range of applications.
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Hexanal is a chemical compound used as a reagent in various laboratory applications. It is a clear, colorless liquid with a pungent, grassy odor. Hexanal is commonly used as a standard or reference material in analytical procedures, particularly in the fields of chemistry, biochemistry, and food science.
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N-alkanes are a group of saturated aliphatic hydrocarbons with the general formula CnH2n+2. They are commonly used as solvents, fuels, and chemical intermediates in various industrial and laboratory applications.
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Nonanal is a chemical compound commonly used in laboratory settings. It is a colorless liquid with a characteristic fatty, green, and floral aroma. Nonanal is a saturated aliphatic aldehyde with the molecular formula C9H18O.
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The HP-5MS column is a fused silica capillary column used for gas chromatography. It is designed for the separation and analysis of a wide range of organic compounds.
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Methoxyamine hydrochloride is a chemical compound used as a laboratory reagent. It serves as a source of the methoxyamine functional group, which is commonly utilized in various chemical reactions and analytical procedures.
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Acetonitrile is a colorless, volatile, flammable liquid. It is a commonly used solvent in various analytical and chemical applications, including liquid chromatography, gas chromatography, and other laboratory procedures. Acetonitrile is known for its high polarity and ability to dissolve a wide range of organic compounds.

More about "Alkanes"

Alkanes, the simplest class of saturated hydrocarbons, are a crucial focus of research and industry.
With the general formula CnH2n+2, these compounds are found in abundant natural sources like natural gas and petroleum, serving as fuels, solvents, and chemical feedstocks.
Understanding alkanes is vital for energy production, environmental impact analysis, and diverse industrial processes.
Researchers can leverage innovative tools like PubCompare.ai to optimize their alkane research workflows.
This AI-driven platform empowers scientists to easily locate and compare protocols from literature, preprints, and patents, identifying the most effective methods and products.
By harnessing the power of artificial intelligence, researchers can enhance the accuracy, reproducibility, and efficiency of their alkane studies.
Related terms and subtopics crucial for alkane research include: HP-5MS capillary column, a common gas chromatography stationary phase for analyzing alkanes; methanol, a widely used solvent; GCMS-QP2010 Ultra, a high-performance GC-MS system; pyridine, a common derivatization agent; hexanal and nonanal, examples of linear alkanal compounds; N-alkanes, the broader class of normal (straight-chain) alkanes; and methoxyamine hydrochloride and acetonitrile, which are reagents used in sample preparation techniques.
Leveraging these insights can help researchers navigate the complex landscape of alkane science and unlock new discoveries.