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Coumarin 6

Coumarin 6 is a fluorescent dye commonly used in research applications.
It exhibits bright green fluorescence and is known for its high quantum yield, making it a valuable tool for various imaging and detection techniques.
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Most cited protocols related to «Coumarin 6»

Reagents—The αIIbβ3 antagonist lotrafiban was supplied by GlaxoSmithKline (King of Prussia, PA). The anti-Rac (23A8) monoclonal antibody was purchased from Upstate Biotechnology (TCS Biologicals, Bucks, UK). Anti-Rac2 polyclonal antibody and anti-Rac3 polyclonal antibody were generously provided from Gary Bokoch (Scripps Institute, La Jolla, CA) and Ivan de Curtis (San Rafaele Scientific Institute, Milan, Italy), respectively. The cDNA for the GST-CRIB domain of PAK1 prepared as described previously (21 (link)) and the active form of Rac (L61Rac) were the kind gifts from Dr. Doreen Cantrell (Imperial Cancer Research Fund, London, UK). D-Phenyl-alanyl-1-prolyl-1 arginine chloromethyl ketone was purchased from Calbiochem. Fibrinogen depleted of plasminogen, VWF, and fibronectin was from Kordia Laboratory Supplies, Leiden, Netherlands. VWF was a generous gift from Michael C. Berndt (Monash University, Clayton, Australia). All other reagents were from Sigma or previously named sources (22 (link), 23 (link)).
Preparation of Human Washed Platelets—Human venous blood was drawn by venipuncture from healthy volunteers into sodium citrate and acid/citrate/dextrose as described previously (23 (link)). Platelet-rich plasma (PRP) was prepared by centrifugation of whole blood at 200 × g for 20 min. The platelets were then isolated from PRP by centrifugation at 1000 × g for 10 min in the presence of prostacyclin (0.1 μg/ml). The pellet was resuspended in modified HEPES/Tyrodes buffer (in mM: 129 NaCl, 0.34 Na2HPO4, 2.9 KCl, 12 NaHCO3, 20 HEPES, 5 glucose, 1 MgCl2; pH 7.3) containing 0.1 μg/ml prostacyclin. The platelets were washed once via centrifugation (1000 × g for 10 min) and resuspended at the desired concentration with HEPES/Tyrode buffer.
Preparation of Murine Washed Platelets—The generation of mice bearing a conditional loxP-flanked allele of Rac1, Rac1flox, has been described previously (6 (link)). To induce expression of the Mx1-Cre trans-gene, the mice were given a 150-μl intraperitoneal injection of synthetic double-stranded RNA polyinosinic-polycytidylic acid (2 mg/ml) every other day for a total of three injections, and blood was taken at least 14 days after the last injection to ensure a complete turnover of platelets. The protein expression of Rac1 and Rac2 was verified for both control and Rac-deficient mice for each experiment (data not shown). The number of platelets in whole blood from Rac1-/-, Rac2-/-, or Rac1-/-Rac2-/- mice was no different from wild type (data not shown). Bleeding problems, such as the intraperitoneal hemorrhage seen in Syk- and SLP-76-deficient mice, were not observed for these mice.
Murine blood was drawn from CO2terminally anesthetized mice by cardiac puncture and taken into 100 μl of acid/citrate/dextrose. PRP was obtained by centrifugation at 200 χ g for 6 min. Washed platelets were prepared via centrifugation of PRP at 1000 × g in the presence of prostacyclin (0.1 μg/ml) for 6 min. The pellet was resuspended in modified HEPES/Tyrode buffer to the desired platelet level. All animals were maintained using housing and husbandry in accordance with local and national legal regulations.
In separate experiments, human or murine platelet suspensions were treated with 10 μM cytochalasin D, 0.1-10 μg/ml CRP, 1-10 μM ADP, 0.04-1 units/ml thrombin, 10 μM lotrafiban or 1 mM adenosine 3′,5′-diphosphate (A3P5P), and 1 μM AR-C67085 for 10-30 min before use in the assays. Unless otherwise stated, all experiments were performed in the presence of 2 units/ml apyrase and 10 μM indomethacin and in the absence of exogenously added Ca2+.
Measurement of Rac Activity—Rac activity was measured essentially as described in Pearce et al. (18 (link)) using the CRIB domain of PAK1 (amino acids 67-150), which binds the GTP-bound form of Rac. Following stimulation of platelet suspensions (3 × 108/ml), reactions were stopped with an equal volume of 2× lysis buffer (2% (v/v) Nonidet P-40, 2% (w/v) N-octyl glucoside, 300 mM NaCl, 20 mM Tris/HCl, 2 mM EGTA, 20 mM MgCl2, 1 mM phenylmethylsulfonyl fluoride, 10 μg/ml leupeptin, 10 μg/ml aprotinin, 1 μg/ml pepstatin A, pH 7.4, and 2 mM orthovana-date). Alternatively, platelets (3 × 108/ml) were incubated for 10-45 min in dishes coated with fibrinogen, collagen, laminin, or BSA2in the absence or presence of thrombin (1 units/ml) and apyrase (2 units/ml). Unbound platelets were removed by two washes with phosphate-buffered saline followed by aspiration, and adherent cells were solubilized with 1× lysis buffer. A sample of the suspension over BSA was taken and used as a control. Insoluble material was then removed by centrifugation (5 min, 13,000 rpm), and GST-PAK1, previously incubated with glutathione agarose beads, stored in glycerol at -80 °C, and washed with 1× lysis buffer, was added to the lysates and incubated for 1 h at 4 °C. Beads were then washed with 1× lysis buffer, and the bound protein was taken up into Laemmli buffer. The resulting samples were separated by 12% SDS-PAGE, transferred to polyvinylidene difluoride membranes, and immunoblotted with a Rac-specific antibody and horseradish peroxidase-conjugated secondary antibodies (Amersham Biosciences). Protein was detected using ECL (Amersham Biosciences).
Measurement of Filamentous Actin Content—Filamentous actin content of washed platelets was measured using a modification of the method of Machesky and Hall (24 (link)). Basal or activated platelets (2 × 108/ml) were fixed with an equal volume of 3.7% formaldehyde containing a saturating amount of FITC-phalloidin (20 mM KH2PO4, 10 mM Pipes, 5 mM EGTA, 2 mM MgCl2, 0.1% Triton X-100, 3.7% formalde-hyde, 2 μM FITC-phalloidin) and incubated for1hat room temperature on a nutator. The platelets were then pelleted for 2 min in a microcentrifuge, and pellets were washed in 0.1% saponin, 20 mM KH2PO4, 10 mM Pipes, 5 mM EGTA, 2 mM MgCl2. Pellets were then resuspended in methanol to extract the FITC-phalloidin and incubated for 1 h on a nutator at room temperature. FITC-phalloidin binding was measured for each sample with the fluorescence emission at 520 nm and excitation at 488 nm. Alternatively, F-actin levels were assessed via flow cytometry after fixation, permeabilization, and staining of platelets with FITCphalloidin as described previously (18 (link)). Filamentous actin content was expressed as a comparison with values obtained for untreated cells processed in parallel on the same day.
Platelet Aggregation and Shape Change—A quantity of 300 μl of PRP or washed platelets (2 × 108/ml) was used for aggregation. Stimulation of platelets was performed in a PAP-4 aggregometer (Bio/Data Corp., Horsham, PA) with continuous stirring at 1200 rpm at 37 °C for the times shown. Aggregation of platelets was monitored by measuring changes in light transmission.
Static Adhesion Assays—Coverslips were incubated with a suspension of fibrinogen (100 μg/ml), collagen (100 μg/ml), or laminin (50 μg/ml) overnight at 4 °C. Surfaces were then blocked with denatured BSA (5 mg/ml) for 1 h at room temperature followed by subsequent washing with phosphate-buffered saline before use in spreading assays. Quiescent platelets failed to bind to surfaces coated with denatured BSA (data not shown).
Platelet spreading (2 × 107/ml) was imaged in real time using Köhler illuminated Nomarski differential interference contrast optics with a Zeiss 63× oil immersion 1.40 NA plan-apochromat lens on a Zeiss Axiovert 200M microscope. Time-lapse events were captured by a Hamamatsu Orca 285 cooled digital camera (Cairn Research, Kent, UK) using Slidebook 4.0 (Intelligent Imaging Innovations, Inc., Denver, CO). To compute the length and thickness of filopodia and surface area of spreading platelets, images were manually outlined and quantitated by determining the number of pixels within each outline using a Java plugin for the Image J software package as described previously (23 (link)). Imaging a graticule under the same conditions allowed the conversion of pixels size to microns.
Flow Adhesion Studies—For flow adhesion studies using collagen, mouse blood was drawn into sodium heparin (10 IU/ml) and D-phenylalanyl-1-prolyl-1 arginine chloromethyl ketone (40 μM). Alternatively, mouse blood was drawn into sodium citrate (0.38% w/v) for immobilized VWF adhesion studies. Glass capillary tubes (Camlab, Cambridge, UK) were coated with 100 μg/ml type I collagen from equine tendon (Horm, Nycomed, Munich, Germany) or 100 μg/ml VWF, 100 units/ml thrombin for1hat room temperature. The capillaries were washed and blocked with phosphate-buffered saline containing 5 mg/ml BSA for 1 h at room temperature before being mounted on the stage of an inverted microscope (DM IRB; Leica, Milton Keynes, UK). Anticoagulated whole blood was perfused through the chamber for 4 min at a wall shear rate of 1000 s-1, followed by washing for 3 min at the same shear rate with modified Tyrodes buffer before being fixed with 3.7% paraformaldehyde for 30 min and imaged using DIC microscopy. In selected experiments, fixed samples were incubated overnight with the fluorescent dye DiOC6(2 μM; Molecular Probes Inc., Eugene, Oregon) before being imaged using confocal microscopy (DM IRE2; Leica, Milton Keynes, UK). In separate experiments, whole blood was fluorescently labeled with DiOC6(2 μM, 10 min at 37 °C), and the accumulation of DiOC6-labeled platelets was monitored in real time using fluorescence microscopy (CoolSnap ES, Photometrics, Huntington Beach, CA).
Image analysis was performed off-line using ImageJ. Platelet adhesion results are expressed as the percentage of surface area covered by platelets.
Laser-induced Vessel Wall Injury—All procedures were undertaken with approval from the United Kingdom Home Office in accordance with the Animals (Scientific Procedures) Act of 1986. Male mice were anesthetized with ketamine (100 mg/kg Vetalar; Amersham Biosciences and Upjohn Ltd., UK) and 2% xylazine (20 mg/kg; Millpledge Pharmaceuticals, UK). The cremaster, a transparent muscle surrounding the testicle, was exteriorized and continuously superfused with a bicarbonate-buffered saline (36 °C) aerated with 5% CO2, 95% N2. High speed intravital microscopy experiments were performed as described previously by Falati et al. (25 (link)). Arterioles with a diameter of 25-35 μm were selected for study, and endothelial injury was induced using a pulsed nitrogen dye laser (coumarin 440 nm) focused on the luminal surface. To label platelets fluorescently, 20 μl of Alexa Fluor 488 conjugated to goat anti-rat antibody (Molecular Probes, Eugene, OR) and 5 μl of rat anti-mouse CD41 antibody (Pharmingen) were added to 70 μl of saline and infused via the carotid cannula. Multiple thrombi in each cremaster preparation were generated upstream to previous injuries in the same or similar sized arterioles. The background fluorescence intensity, predominantly because of freely circulating platelets, was determined and subtracted from the fluorescence intensity of the developing thrombus. The resulting value was multiplied by the sum of all pixels above background to give a value for integrated intensity at each time point. This integrated intensity value was directly proportional to the size of the developing thrombus and when plotted against time provided a graph that illustrated the dynamic kinetics of platelet accumulation.
Analysis of Data—Experiments were carried out on at least three occasions, and images shown are representative data from one experiment. Where applicable, results are shown as mean ± S.E. Statistical significance of differences between the means was determined by analysis of variance. If the means were shown to be significantly different, multiple comparisons were performed by the Tukey test. Probability values of p < 0.01 were selected to be statistically significant.
Publication 2005
A mixture of thiosemicarbazone 9 (10 mmol) and the appropriate α-halocarbonyl compounds 10a–d, phenacyl bromide 12a or coumarin-3-acetylbromide 12 b (10 mmol) in dioxane (25 ml) containing catalytic amount of triethylamine was heated under reflux for 8 h and then cooled. The solution was poured onto water-ice and concentrated hydrochloric acid. The solid produced was collected by filtration and crystallized from ethanol to furnish compounds 11a–d and 13a, b, respectively.
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Publication 2018
Catalysis Coumarins dioxane Ethanol Filtration Hydrochloric acid Ice phenacyl bromide Thiosemicarbazones triethylamine
All media and medium components were procured from Hi-Media Laboratories, Mumbai. All organic solvents and other chemicals were purchased from Qualigens Fine Chemicals, India.
Bacterial strains and culture conditions:Pseudomonas aeruginosa PAO1 and Acinetobacter baumannii MTCC1425 were used as reference strains. Escherichia coli MG4/pKDT17 and Chomobacterium violaceum ATCC12472 were used as AHL reporter strain. Staphylococcus aureus MTCC737 strain was used for LasA protease assay. Luria Bertani (LB) medium was used for the bacterial growth. E. coli MG4/pKDT17 was grown in LB medium containing 100 μg ampicillin.
Tests and controls: CEE dissolved in 100 per cent dimethyl sulphoxide (DMSO), was used as the test in all assays. Azithromycin dihydrate (Sisco Research Laboratories, India), dissolved in sterile phosphate buffered saline (PBS), pH 6.0, was used as positive control for QS inhibition, and inhibition of QS regulated virulence and biofilm development8 (link). Azithromycin was used at a standardized concentration of 4.0 μg/ml. LB broth, with or without plant extract, was used as blank. DMSO and PBS were maintained as negative controls. Same volumes of the test and controls were used in all the assays.
Plant material collection and authentication: Dried stem of Tinospora cordifolia (Willd.) Miers was purchased from local vendor, authenticated and voucher deposited (Number: S/B-122) at Agharkar Research Institute, Pune, Maharashtra, India.
Preparation of CEE: Dried and powdered, stem (100 g) was macerated in 500 ml of ethyl acetate at ambient temperature (27°C) with intermittent shaking for 48 h. The extract was filtered using Whatman filter paper no. 1, dried in hot air oven at 45°C, and stored at 4°C in amber bottle.
Anti-QS activity at different concentrations: C. violaceum pigment production assay and long acyl-HSL production assay7 were performed to determine the anti-QS activity of plant extract (CEE) at the concentration range of 0.2 to 10.0 mg/ml (0.2, 0.5, 1, 2, 4, 6, 8, 10). Further, IC50 was calculated using regression analysis. The IC50 value was used as a basis to decide the test concentration for further assays.
C. violaceum pigment production assay:C. violaceum produces a short acyl-HSL (C6-HSL) which regulates production of dark purple pigment, violacein. Thus, inhibition of short acyl-HSL in C. violaceum is indicated by inhibition of violacein production. Agar well diffusion assay was performed to evaluate inhibition of short acyl-HSLs by CEE7 .
Long acyl-HSL production assay: The ability of CEE to inhibit long acyl-HSLs in P. aeruginosa and A. baumannii was tested using the reporter strain, E. coli MG4/pKDT177 . This strain expresses β-galactosidase gene in response to the exogenous addition of long acyl-HSLs. The enzyme activity thus corresponds to the amount of long acyl-HSLs added, and decrease in enzyme activity indicates long acyl-HSL inhibition. Overnight bacterial cultures of P. aeruginosa and A. baumannii were diluted with fresh LB broth, up to an OD600 of 0.2. Then, 0.1 ml of CEE (final concentration of 0.2 to 10.0 mg/ml)/controls was added to 4.9 ml of the diluted culture and incubated at 37 °C for
24 h. Acyl-HSL obtained in the culture supernatant was extracted with ethyl acetate, twice; ethyl acetate layers were pooled and evaporated to dryness under nitrogen. The dried extract was reconstituted in LB broth and added to 2.0 ml of overnight grown reporter strain culture and incubated for five hours at 37° C to induce the expression of β-galactosidase. The enzyme activity was determined as described by Miller using ortho-nitrophenyl-ß-galactopyranoside (ONPG) as substrate9 and expressed in terms of Miller units.
Collection of clinical isolates: Clinical isolates of P. aeruginosa and A. baumannii, obtained from wound infections, respiratory infections, urinary tract infections and bloodstream infections, were obtained from local government hospitals. The isolates were maintained as 20 per cent glycerol stocks at - 80°C.
Qualitative AHL detection: A modified protocol of cross feeding assay10 (link) was followed. The bacterial isolates were cross streaked in concentric circles rather than parallel straight lines. The test strain (clinical isolates of P. aeruginosa and A. baumannii) was spot inoculated and the reporter strain (E. coli MG4/pKDT17) was streaked around it, one cm apart, on LB agar, previously spread with 40 μl of 20 mg/ml X-gal solution (Sigma-Aldrich, USA). Reference strains were used as positive control, and reporter strain as negative control. Blue colouration in the growth of reporter strain suggested AHL production.
Qualitative protease detection: Clinical isolates of P. aeruginosa were spot inoculated on skim milk agar plates and incubated at 37°C. After overnight incubation, halo around growth indicated protease activity. Reference strain (PAO1) was used as positive control.
Typing of clinical isolates of P. aeruginosa: The procedure of pyocin typing given by Gillies and Govan11 (link) was modified. Due to unavailability of the Wahba indicator strains, the clinical isolates were cross streaked among themselves to check for growth inhibition of each isolate by the remaining isolates. Thus, depending on the growth inhibition pattern, the isolates were grouped.
Effect of CEE on virulence of P. aeruginosa: CEE, dissolved in DMSO, was used at a final concentration of 5 mg/ml (rounded off IC50 value) to evaluate its activity against the production of extracellular virulence factors in reference (PAO1) and clinical isolates (K04 and C03) of P. aeruginosa. The clinical strains, K04 and C03, formed the representatives for group I and group II isolates (classified on the basis of pyocin typing), respectively. Reduced enzyme activity or pyocyanin concentration in comparison to negative control suggested virulence inhibition. Per cent inhibition was calculated as [(enzyme activity/pyocyanin concentration for negative control - enzyme activity/pyocyanin concentration for CEE/azithromycin)×100] ÷ [enzyme activity/pyocyanin concentration for negative control].
Las A staphylolytic protease assay: The method of Kessler et al12 (link) was followed, with modifications. The reaction volume was maintained at 2.0 ml instead of 1.0 ml, and the reaction temperature was optimized at 37 °C. P. aeruginosa was inoculated in 5 ml LB broth containing controls/CEE, up to an OD600 value of 0.2, and incubated for 24 h, at 37°C. Culture was centrifuged at 8,000×g, 4°C. 0.5 ml of culture supernatant was mixed with 1.5 ml of boiled (15 min) S. aureus suspension (OD600 value of ~0.6) in 0.02 M Tris-Cl buffer (pH 8.5). OD600 was measured at 0 and 3 h post incubation at 37°C, using Perkin-Elmer UV-Vis Spectrophotometer Lambda 25 model. Enzyme activity was expressed as units/ml; 1 unit corresponding to decrease in OD by 0.01.
Las B elastase assay: Enzyme activity was studied as per the method of Pearson et al13 (link) with modifications. The bacterial cultures were grown in LB broth instead of peptone tryptic soy broth (PTSB), the substrate concentration was decreased from 20 to 10 mg Elastin-Congo Red (ECR) per ml of buffer and the incubation time was optimized to 24 h. P. aeruginosa was inoculated in 5 ml LB broth containing controls/CEE, up to an OD600 value of 0.2, and incubated for 24 h, at 37°C. Culture was centrifuged at 8,000×g, 4°C. One ml of buffer (Tris-Cl 0.1 M, CaCl2 1 mM, pH 7.5) containing 10 mg ECR substrate (Sigma-Aldrich, USA) was mixed with 0.5 ml of culture supernatant, incubated at 37°C, 24 h. The tubes were centrifuged at 8,000×g, 4°C and OD495 of the supernatant was measured. Enzyme activity was expressed as units/ml, where 1 unit represents increase in OD by 0.01.
Pyocyanin production assay: The procedure given by Huerta et al14 was followed, with modifications. The bacterial strains were grown in King's medium B for 48 h instead of culturing in LB medium with 24 h incubation. P. aeruginosa was inoculated in King's medium B broth containing controls/CEE up to OD600 value of 0.2 and incubated for 48 h, at 37°C. Pyocyanin was extracted from the culture supernatant using chloroform and measured spectrophotometrically at 690 nm. Pyocyanin concentration was calculated as mg/ml using the formula, OD690 ÷ 1615 (link).
Effect of CEE on biofilm formation of P. aeruginosa and A. baumannii: Biofilm formation of the reference strains and clinical isolates of the organisms was evaluated using 96-well microtiter plate assay, as per the method of Mathur et al16 (link), with modifications. LB broth supplemented with glucose was used for biofilm growth, biofilm fixation was done using methanol, and the bound dye was dissolved in ethanol before measuring its absorbance at 490 nm. An aliquots (200 μl) of overnight cultures diluted in LB broth (supplemented with 0.5% glucose) was added to the microtiter wells. CEE, dissolved in DMSO, was added at the concentration of 5.0 mg/ml. For positive control, azithromycin dihydrate, dissolved in PBS, pH 6.0, was used at a 4 μg/ml concentration and DMSO/PBS was used as negative control. The plates were incubated for 24, 48 and 72 h, at 37 °C. Following incubation, the contents in the wells were removed, washed with distilled water, and the adherent biofilm was fixed with methanol for 15 min. This was followed by staining with 1 per cent crystal violet dye for 15 min. Excess stain was removed, the wells were washed with distilled water and the remaining bound dye was resolubilized in 95 per cent ethanol for five min. OD490 was measured using BioRad Microplate reader Model 680 (Hercules, CA, USA). Per cent inhibition was calculated as [(biofilm density for negative control - biofilm density for CEE/azithromycin)×100] ÷ [biofilm density for negative control].
Phytochemical class detection of CEE: Standard chemical tests17 were performed for detection of carbohydrates, proteins, alkaloids, tannins, flavonoids, cardiac glycosides, anthroquinone glycosides, coumarin glycosides, saponin glycosides and steroids.
Activity guided fractionation of CEE: CEE (5 g) was subjected to silica gel (60-120 mesh) (Merck Co., India) column chromatography. A glass column of 600 mm length, 35 mm internal diameter and volume capacity of 600 ml, was packed with a silica bed of about 270 mm length. CEE was separately adsorbed on silica gel, dried, and loaded over the silica bed. Gradient elution was carried out using 100 per cent petroleum ether, followed by increasing concentration of ethyl acetate, up to 100 per cent ethyl acetate, and then increasing polarity with methanol, upto 80 per cent methanol. About 50 ml fraction volume was collected, and based on thin layer chromatography (TLC) profile, the fractions were pooled. In total, 11 fractions were obtained and further evaluated for anti-QS, anti-virulence, anti-biofilm and anti-bacterial activities. The fraction showing significant (P<0.05) anti-QS, anti-virulence, anti-biofilm activities and absence of antibacterial activity, was subjected to GC-MS analysis.
Identification of components in active fraction: One mg of the fraction (fraction 5) was derivatized by silylation reaction using 100 μl N-methyl-trimethylsilyltrifluoroacetamide (MSTFA) (Sigma-Aldrich, USA) and 50 μl pyridine, at 60°C, for 30 min. The mixture was dried, redissolved in ethyl acetate and analyzed using GC-MS18 . Shimadzu GCMS-QP2010 ultra equipped with a quadrapole mass spectrometer (Tokyo, Japan) was used. Chromatographic separation was performed on Rtx®-5MS capillary column (Restek, PA, USA), coated with 0.25 μm film of cross bond® 5 per cent diphenyl/ 95 per cent dimethyl polysiloxane; dimensions 30 m length × 0.25 mm internal diameter, 0.25 μm film thickness. Helium was used as the carrier gas at a flow rate of 44.5 cm/sec. The oven temperature programme was 80°C for 2 min, 80 to 250°C at 15°C/min and 10 min at 250°C. Two μl of sample was injected in 1:75 split ratio. The injector temperature and the interface temperature was 250°C. The mass spectrometer was operated in electron positive-mode ionization, with 70 eV ionization voltage. Ion source temperature was 250°C. The data were obtained in full scan mode (total ion current-TIC); mass range 35 - 500 amu. Identification of the compounds was done by comparing their mass spectra with the reference spectra in National Institute of Standards and Technology (NIST) library (http://chemdata.nist.gov/).
Molecular docking: Schrödinger Small-Molecule Drug Discovery Suite Release 2013-1 (Schrödinger 2013, New York, USA) and the products included therein were used for performing various molecular modelling studies. Glide version 5.9 was used to dock the compounds isolated from the active fraction, native ligand and known LasR inhibitors19 (link) with two target proteins, LasI and LasR. A single structure file of AHL synthase, LasI from P. aeruginosa, is available in the Protein Data Bank (PDB; www.rcsb.org/) (PDB ID 1RO5). For LasR of P. aeruginosa, the structure showing LasR bound to its autoinducer (PDB ID 2UV0) was used. The protein structures were prepared using Protein Preparation wizard and subjected to Receptor Grid Generation using Glide 5.9. The generated grid was used for docking the compounds in the active site. Similarly, the structures of the compounds identified in fraction 5 were built in Maestro. All the structures were then subjected to LigPrep2.6, using the default settings. This set of molecules was subjected to docking in the active site of target proteins. For docking studies, Extra Precision (XP) mode was used. The docked poses were minimized and root mean square deviation (RMSD) to input molecular geometries were calculated.
High performance (HP) TLC fingerprinting: HPTLC was performed for fingerprinting of the crude extract (CEE) and the column fractions using two mobile phases; n-hexane:ethyl acetate::17:3 which is known to separate diterpenoids20 and a general separation system, toluene:ethylacetate:methanol:formic acid::8:2:1:1.HPTLC was performed on 10×10 cm aluminium plates coated with 0.25 mm layer of silica gel 60 F 254 (Merck, Germany); 20 μl of the extract (10 mg/ml in ethyl acetate) was applied as 8 mm wide and 8.0 mm apart, at a rate of 5 μl/sec, using a DESAGA Applicator AS 30 sample applicator (Sarstedt, Nümbrecht, Germany) equipped with a 100-μl Hamilton (USA) syringe. The plates were air dried, allowed to develop up to 80 mm in a pre-saturated (30 min) glass twin trough chamber containing 20 ml of the respective mobile phase. After development, plates were dried and visualized under a UV cabinet at 254 and 366 nm. The plates were scanned at 254 and 366 nm, using a HPTLC Densitometer CD 60, 230V, equipped with ProQuant software (Sarstedt, Nümbrecht, Germany). The plates were derivatized using Anisaldehyde sulphuric acid reagent21 and again scanned at 366 nm and 540 nm.
Statistical analysis: The experimental data were analyzed using paired t test, Wilcoxon signed rank test, one way analysis of variance (ANOVA) with the post hoc test, Dunnett's test, considering the level of significance (P<0.05). The statistical analysis software, SPSS 17.0 (Chicago, USA) was used.
Publication 2016
C6 loaded-NPs were fabricated with the following surface
modifications: 1) unmodified (NP-C6-Unmod), 2) avidin-only modified
(NP-C6-AV), 3) AP-modified (NP-C6-AP), 4) 2.5 kDa chitosan-modified
(NP-C6-CH2.5), and 5) 20 kDa chitosan-modified (NP-C6-CH20). Peptides were
synthesized by the W.M. Keck Facility at Yale University, and contained a
Ser-Gly dipeptide spacer between the N-terminal amino acid and biotin.
Prior to NP synthesis, avidin-palmitate was conjugated to the surface
of PLGA-NPs (50:50 carboxy-terminated, inherent viscosity range
0.55–0.75 dL/g, LACTEL®) as previously described
(14 (link)). Briefly, the
avidin-palmitate was prepared by reacting 10 mg of avidin with 14-fold molar
excess of palmitic acid-N-hydroxysuccinimide ester in 2% sodium
deoxycholate in phosphate buffered saline (PBS) (37°C, 12 hr),
followed by overnight dialysis.
C6 NPs were synthesized using a single oil-in-water emulsion
technique (14 (link), 23 (link)). One hundred mg PLGA were dissolved overnight in 1
mL methylene chloride (DCM) (oil). C6 (Acros Organics, Geel, Belgium) was
added to the DCM polymer solution (15 µg C6/mg polymer), vortexed
and sonicated. For unmodified NPs, the PLGA-C6 solution was added dropwise
to 2.5% polyvinyl alcohol (PVA) alone (aqueous), whereas for
modified NPs, the PLGA-C6 solution was added to 2.5% PVA containing
1 mg/mL avidin palmitate. Both solutions were vortexed and sonicated. After
the sonication/emulsion step, the emulsified solution was added to a
0.3% PVA mixture while stirring to evaporate the DCM. After 3 hours,
this solution (DCM evaporated, leaving NPs in PVA) was added to centrifuge
tubes and centrifuged/washed three times with DI water to remove the PVA.
After 3 washes/centrifuges the NPs were suspended in 5–10 mL of DI
water, frozen at −80°C, and subsequently lyophilized to
produce dry NPs.
After NPs were hardened during solvent evaporation, those with
surface modification were reacted with ten times molar excess biotin-CH2.5,
CH20 or AP to avidin, in PBS for 30 min. Unmodified NPs were incubated in
PBS for 30 min without ligand. After the reaction, NPs were washed 2 times
in deionized water to remove residual solvent, centrifuged at 4° C,
lyophilized, and stored at −20°C until use.
Publication 2013
Amino Acids Anabolism Avidin Biotin Chitosan Dialysis Dipeptides Emulsions Esters Exhaling Freezing Ligands Methylene Chloride Molar Palmitate Palmitic Acid peptide M, retinal S antigen Phosphates Polylactic Acid-Polyglycolic Acid Copolymer Polymers Polyvinyl Alcohol Saline Solution Solvents Viscosity

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Publication 2008
130-nm albumin-bound paclitaxel Bath Biotin Buffers Cell Culture Techniques Cells Chloroform coumarin Culture Media Emulsions Folic Acid High-Performance Liquid Chromatographies Mercury Methanol Micelles monomethoxypolyethyleneglycol-polylactide block copolymer Paclitaxel Polylactic Acid-Polyglycolic Acid Copolymer Polymers Pressure Ultracentrifugation Vacuum

Most recents protocols related to «Coumarin 6»

6-Coumarin-loaded NPs were made dissolving 5 mg of 6-Coumarin (Sigma-Aldrich, Saint Louis, MO, USA) in 300 μl of a solution of 30 mg of PLGA-PEG-Bis-sulfone in THF. This solution was added dropwise to 7 ml of stirring water. The reaction was left to proceed for 3 h and then they were collected and centrifugated to be subsequently used for further analysis.
Publication 2024
Labelled PEA was obtained by adding coumarin-6 (0.1%, w/w) to an ethanol solution of a known weight of PEA. Ethanol was removed in a vacuum concentrator and the resulting powder was stored at 25 °C in the dark. The coumarin-6 labelled PEA was used to prepare labelled PEA-LNPs.
Coumarin-6 in vitro release from labelled PEA-LNPs was evaluated over the course of 24 h. Labelled particles (40 mg) were incubated at 37 °C in 40 mL of phosphate buffer (20 mM, pH 7.4) or RPMI 1640 without phenol red, under magnetic stirring. One milliliter of suspension was withdrawn from the system at time intervals of 30 min and replaced with 1 mL of fresh solvent to maintain constant volume. The sample was subjected to centrifugation at 13,000× g using a Microcon® centrifugal filter (100 kDa, Millipore Corporation, Bedford, MA, USA), and coumarin-6 content was determined in the supernatant by vis-spectroscopy at 459 nm. The analysis was performed in triplicate.
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Publication 2024
To
evaluate the cellular uptake and mucoadhesive properties of thiolated
CDs, coumarin-6, a lipophilic fluorescent dye, was host–guest
complexed with native β-CD, β-CD-SH, and β-CD-SS-MESNA
following a previously described method.6 Briefly, 1 mL of ethanolic coumarin-6 solution (0.02% m/V) was added
to 50 mL of 100 mM phosphate buffer pH 6.5 containing 50 mg of CD.
The dispersions were stirred in the dark for 24 h at room temperature,
filtered to eliminate the free dye and nondissolved CDs, and lyophilized
for 2 days. The formed complexes were characterized based on their
fluorescence in 100 mM phosphate buffer (pH 6.8) and ethanol, as described
previously.10 (link)
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Publication 2024

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Publication 2024
SUM159 cells were treated with NExT or PLGA NPs (100 µg/ml) loaded with coumarin-6 for 5, 15, and 30 min. The MDA-MB-468 cell line was cultured in the presence/absence of IFNγ (100 ng/ml) for 24 h and treated with NExT or NNaT (100 µg/ml) loaded with coumarin-6. For the rescue experiment, MDA-MB-468 cells (with/without IFNγ, 100 ng/ml) were treated with the anti-PDL1 antibody atezolizumab (10 µg/ml) for 24 h and coumarin-6-loaded NExT or PLGA NPs (100 µg/ml) for 15 min. PDL1-transduced or wild-type Namalwa and Nalm7 cells were treated with NExT or PLGA NPs (100 µg/ml) loaded with coumarin-6 for 5 and 15 min, and 30 and 60 min, respectively. The percentage of cells positive for coumarin-6 fluorescence was detected in the FITC channel by the FACS Verse cytometer and analyzed with FlowJo.
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Publication 2024

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Coumarin-6 is a fluorescent dye used in various scientific applications. It exhibits green fluorescence and is commonly used as a tracer or marker in analytical techniques such as microscopy and spectroscopy. The core function of Coumarin-6 is to provide a fluorescent label or signal in research and laboratory settings.
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More about "Coumarin 6"

Coumarin 6 is a versatile fluorescent dye widely used in research applications.
It emits a bright green fluorescence and is known for its high quantum yield, making it a valuable tool for various imaging and detection techniques.
This fluorescent marker is commonly employed in cell biology, microscopy, and biochemical assays.
Structurally, Coumarin 6 (also known as Nerol, Hexylcinnamal, or C6) belongs to the coumarin family of organic compounds.
Coumarins are a class of benzopyrone derivatives that exhibit diverse biological activities and are found naturally in many plants, including tonka beans, sweet clover, and lavender.
Beyond Coumarin 6, related coumarin compounds such as 7-hydroxycoumarin (also called umbelliferone) and Phenacetin have also been studied for their pharmacological properties, including anti-inflammatory, analgesic, and antioxidant effects.
These coumarins have found applications in medicine, cosmetics, and as analytical reagents.
To enhance the versatility of Coumarin 6, researchers often use it in combination with other chemicals and materials.
For instance, Coumarin 6 can be incorporated into polymers like Polyvinyl alcohol (PVA) to create fluorescent nanoparticles or films for advanced imaging and sensing applications.
When working with Coumarin 6, it is essential to consider appropriate solvents, such as DMSO (dimethyl sulfoxide), which can effectively dissolve and stabilize the dye.
Additionally, common cell culture supplements like Fetal Bovine Serum (FBS) and Penicillin/Streptomycin antibiotics may interact with Coumarin 6-based experiments, and their effects should be carefully evaluated.
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