For all cultivations performed, samples were taken in regular intervals. The OD
600 was measured with a spectrophotometer (Biochrom WPA CO8000, Biochrom Ltd., Cambridge, United Kingdom). The cell dry weight was calculated by dividing the OD
600 by the factor 3.762 which was determined previously (Geissler et al., 2019b (
link)). Prior to further analyses, samples were centrifuged for 10 min at 4°C and 4816
g (Heraeus X3R, Thermo Fisher Scientific GmbH, Braunschweig, Germany) and stored at −20°C until further processing.
Glucose was measured with a HPTLC system (CAMAG AG, Muttenz, Switzerland) as described in Geissler et al. (2019b) (
link). Briefly, the mobile phase used was acetonitrile/H
2O (85:15,
v/
v) and plates were developed over a migration distance of 70 mm. After development, plates were derivatized with diphenylamine (DPA) reagent. DPA was prepared by diluting 2.4 g diphenylamine and 2.4 g aniline in 200 mL methanol and then adding 20 mL 85% phosphoric acid. After derivatization, plates were scanned at 620 nm and the glucose concentration was calculated in dependence of the standard curve.
Surfactin analysis was performed as described in Geissler et al. (2017) (
link) using a HPTLC method. Briefly, samples were extracted three times with an equal volume of chloroform:methanol 2:1 (
v/
v). The pooled solvent layers were evaporated and the crude surfactin was resuspended in methanol to match the initial sample volume. Plates were developed using the mobile phase chloroform:methanol:water 65:25:4 (
v/
v/
v) over a migration distance of 60 mm. After development, the plates were scanned at 195 nm and evaluation was performed by peak area in correspondence to a standard curve.
Spectrophotometric assays (Merck KGaA, Darmstadt, Germany) were used to measure nitrate (Cat. No. 1.09713.0001), nitrite (Cat. No. 1.14776.0001) and ammonium (Cat. No. 1.14752.0001) concentrations.
Acetate concentration was determined with an enzymatic kit (Cat. No. 10148261035, r-biopharm AG, Pfungstadt, Germany).
For ß-galactosidase assay, a volume of 100 μL of cell suspension from strain MG1 or MG5 was mixed with 900 μL Z-Buffer (0.06 mol/L Na
2HPO
4, 0.04 mol/L NaH
2PO
4, 0.01 mol/L KCl, 1 mmol/L MgSO
4 ⋅ 7 H
2O, 0.04 mol/L mercaptoethanol). After addition of 10 μL toluol, the mixture was incubated for 30 min at 37°C and 750 rpm. 200 μL of 20 mmol/L
ortho-nitrophenylgalactopyranoside was added and the reaction was stopped when the solution turned yellow by adding 500 μL of 1 mol/L Na
2CO
3. Samples were centrifuged for 2 min at 19283
g and 250 μL were transferred to a microtiter plate. Absorbance was measured at both 420 nm and 550 nm and the Miller Units (MU) were calculated according to the following equation:
Hoffmann M., Fernandez Cano Luna D.S., Xiao S., Stegemüller L., Rief K., Heravi K.M., Lilge L., Henkel M, & Hausmann R. (2020). Towards the Anaerobic Production of Surfactin Using Bacillus subtilis. Frontiers in Bioengineering and Biotechnology, 8, 554903.