Animal experiments were performed on a well-established model of dental caries disease as described elsewhere.67 (link), 71 (link) Briefly, Sprague-Dawley rats aged 15 days were purchased with their dams from Harlan Laboratories (Madison, WI) and screened for infection with S. mutans. Any animals infected with S. mutans prior to inoculation were removed from the study. Then, the animals were infected orally using an actively growing (mid-logarithmic) culture of S. mutans UA159, and their infection checked via oral swabbing. Infected animals were randomly placed into four treatment groups of n=6, and their teeth treated topically using a custom-made applicator twice daily. The treatment groups included: (1) farnesol-loaded nanoparticles, (2) free nanoparticles, (3) free-farnesol, and (4) vehicle for free-farnesol (15% ethanol, v/v). Each group was provided the National Institutes of Health cariogenic diet 2000 and 5% sucrose water ad libitum. The experiment proceeded for 3 weeks; all animals were weighed weekly, and their physical appearance was noted daily. All animals gained weight equally amongst the experimental groups and remained in good health during the experimental period. At the end of the experimental period, animals were sacrificed, and teeth prepared for caries scoring according to Larson’s modification of Keyes’ system.86 Determination of caries score of the codified jaws was performed by 1 calibrated examiner. This study was reviewed and approved by the University of Pennsylvania Institutional Animal Care and Use Committee (IACUC #805529).
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Farnesol
Farnesol
Farnesol is a naturally occurring sesquiterpene alcohol found in numerous plant species.
It has been extensively studied for its diverse biological activities, including antimicrobial, anti-inflammatory, and antioxidant properties.
Farnesol plays a key role in quorum sensing, a cell-to-cell communication process in bacteria, and has potential applications in the development of novel antimicrobial agents.
Reserchers can utilize PubCompare.ai's AI-driven protocol comparison tool to easily identify and evaluate Farnesol-related protocols from literature, preprints, and patents, optimizing their Farnesol reserch and discovering the most promising products and protocols with enhanced reproducibility.
It has been extensively studied for its diverse biological activities, including antimicrobial, anti-inflammatory, and antioxidant properties.
Farnesol plays a key role in quorum sensing, a cell-to-cell communication process in bacteria, and has potential applications in the development of novel antimicrobial agents.
Reserchers can utilize PubCompare.ai's AI-driven protocol comparison tool to easily identify and evaluate Farnesol-related protocols from literature, preprints, and patents, optimizing their Farnesol reserch and discovering the most promising products and protocols with enhanced reproducibility.
Most cited protocols related to «Farnesol»
Animals
Dental Caries
Dental Diseases
Ethanol
Farnesol
Infection
Institutional Animal Care and Use Committees
Jaw
Physical Appearance, Body
Rats, Sprague-Dawley
Sucrose
Tooth
Vaccination
Biofilms of S. mutans UA159 were formed on saliva-coated hydroxyapatite (sHA) discs (surface area of 2.93 ± 0.2 cm2, Clarkson Chromatography Products Inc., South Williamsport, PA, USA) in batch cultures for 5 days, as detailed elsewhere [21 (link)]. The biofilms were grown in ultrafiltered (10 kDa molecular-weight cut-off) buffered tryptone yeast-extract broth containing 1% (w/v) sucrose [21 (link)]. The culture medium was replaced daily; the organisms were grown undisturbed for 22 h to allow initial biofilm formation. At this point (22 h old), the biofilms were then treated twice-daily (at 10 a.m. and 4 p.m.) until the end of the experimental period (118-h-old biofilm) with one of the following: (i) 1.0 mM myricetin + 2.5 mM tt-farnesol + 125 ppm fluoride (MFar125F); (ii) 1.0 mM myricetin + 2.5 mM tt-farnesol + 250 ppm fluoride (MFar250F); (iii) 250 ppm fluoride (250F); (iv) vehicle control (20% ethanol containing 2.5% DMSO in water); fluoride at 125 ppm F was not included because it is devoid of any significant anti-biofilm effects [12 (link),13 (link)]. The biofilms were exposed to the treatments for 1 min., dip-rinsed three times in sterile saline solution (to remove excess of agents or vehicle-control) and transferred to culture medium. The treatments and rinsing procedures were repeated 6 h later. The pH of culture medium surrounding the biofilms was also determined during the experimental period (until 118 hour biofilms, at 8 a.m., 12 a.m., 4 p.m., 6 p.m.). Our previous studies have shown that the vehicle control (1 min exposure, twice daily) allowed the continued formation of biofilm, and did not affect the biochemical composition and cell viability when compared to biofilms treated with saline solution [20 (link),21 (link)]. Each biofilm was exposed to the respective treatment a total of 8 times. Biofilm assays were performed in duplicate in at least six different experiments.
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Batch Cell Culture Techniques
Biofilms
Biological Assay
Cell Survival
Chromatography
Culture Media
Durapatite
Ethanol
Farnesol
Fluorides
Iodine-125
myricetin
Saline Solution
Saliva
Sterility, Reproductive
Sucrose
Sulfoxide, Dimethyl
Yeasts
2-(dimethylamino)ethyl methacrylate
Bath
Carbon
Centrifugation
Contrast Media
Emulsions
Farnesol
Fingers
High-Performance Liquid Chromatographies
Methanol
Micelles
Nickel
Pharmaceutical Preparations
Phosphotungstic Acid
Raptors
Strains
Transmission Electron Microscopy
To investigate hyphal growth and cell aggregation, C. albicans cells were inoculated into 2 ml of PDB medium at a density of 105 CFU ml−1 in 14 ml test tubes with or without fatty acids (2 μg ml−1) or farnesol (100 μg ml−1) and incubated at 37°C for 24 h without shaking. After incubation for 24 h, aggregated cells and hyphal growths were visualized in bright field using the iRiSTM Digital Cell Imaging System (Logos Bio Systems) at magnifications of 4x and 10x. At least, four independent experiments were conducted.
Candida albicans
Cell Aggregation
Cells
Farnesol
Fatty Acids
Hyphae
Bacto-peptone
Candida albicans
Cells
Dodecanol
Doxycycline
Farnesol
Fetal Bovine Serum
geldanamycin
Glucose
Maltose
monorden
Strains
Yeast, Dried
Most recents protocols related to «Farnesol»
The calcium 6 procedure was used with minor modifications of a previously published procedure using Fluo-4 (González-Cestari et al., 2009 (link); Henderson et al., 2010 (link)). For this calcium accumulation assay, HEK293T cells transiently expressing α4β2 nAChRs were plated at a density of 1.5–2.0 × 105 cells per well in clear 96-well culture plates previously coated with poly-l -ornithine. On the day of the experiment, cells were washed with 100 µl extracellular solution (Henderson et al., 2010 (link)) and incubated in the dark for 1 h at 24°C with 50% Calcium 6 No-Wash dye (Molecular Devices). The plates were then placed into a fluid handling integrated fluorescence plate reader (FlexStation 3, Molecular Devices), and fluorescence was read at excitation of 485 nm and emission of 525 nm from the bottom of the plate with changes in fluorescence monitored at ∼1.5 s intervals. For assessment of agonist activity, 100 μm concentrations of GA flavorants (hexyl acetate, ethyl acetate, or methylbutyl acetate) were delivered to α4β2 nAChRs, and the fluorescent response was monitored for 60 s. As a control, 300 μm nicotine was used to stimulate maximal α4β2 nAChR activity. For antagonist assessment, increasing concentrations of GA flavorants (1, 10, 100, 300, 1000 μm ) were added with 300 μm nicotine and a previously determined GA flavorant, farnesol (Avelar et al., 2019 (link)), which acts as an antagonist and was used as a control for this experiment.
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Acetate
Biological Assay
Calcium
Cells
ethyl acetate
Farnesol
Fluo 4
Fluorescence
Medical Devices
Nicotine
polyornithine
SERPINA3 protein, human
C. albicans strains were grown on Sabouraud’s 2% dextrose agar at 30 ˚C for 72 h. Genomic DNA extraction of the 12 strains was performed using the DNeasy PowerSoil Pro extraction kit from QIAGEN, following the manufacturer’s instructions. The purified DNA samples were sequenced on an Illumina NovaSeq 6000 device by the Genome Quebec Centre of Expertise and Services (Montréal, Canada). The resulting sequencing reads of each strain were de novo assembled using MaSuRCA 4.0.9 [57 (link)]. The annotation was carried out using the funannotate pipeline 1.8.9 [58 ].
The sequences of the 13 strains of C. albicans (including the reference strain SC5314) were used to construct a molecular phylogeny. The complete pipeline used is described in detail elsewhere [59 (link)]. The differences are that in the present study GET_HOMOLOGUES 20,220,516 was used to find homology links and IQ-TREE 1.4.4 for phylogenetic reconstruction with 10,000 ultrafast boostraps. The final tree has been midpoint-rooted using FigTree version 1.4.3 (http://tree.bio.ed.ac.uk/software/figtree/ ). GET_HOMOLOGUES was also used to search for signature genes that could explain the non-response to farnesol.
The breseq tool version 0.37.1 [60 (link)] was used to identify point mutations in the regulatory regions of genes. The − 150 bp and + 150 bp regions of the genes were considered. The genome of strain SC5314 was used as a reference. The CAPRIB tool [30 (link)] was used to determine the amino acid changes that correlate with unresponsiveness to farnesol. However, BLASTP 2.12.0 was used with translated sequences annotated with funannotate instead of TBLASTN. Only proteins that share more than 85% identity and less than 1e− 10 were considered homologous. The SC5314 strain was used as a reference. Amino acid changes and strains were clustered according to a binary model in R.
The NCBI conserved domains database[61 ] was used to delineate the conserved domains of the studied proteins. PSIPRED 4[62 (link)] was used to generate secondary structure predictions and MEMSAT-SVM[63 (link)] to predict transmembrane regions of proteins. Functional links between proteins were detected by using STRING version 11.5 [64 (link)].
The sequences of the 13 strains of C. albicans (including the reference strain SC5314) were used to construct a molecular phylogeny. The complete pipeline used is described in detail elsewhere [59 (link)]. The differences are that in the present study GET_HOMOLOGUES 20,220,516 was used to find homology links and IQ-TREE 1.4.4 for phylogenetic reconstruction with 10,000 ultrafast boostraps. The final tree has been midpoint-rooted using FigTree version 1.4.3 (
The breseq tool version 0.37.1 [60 (link)] was used to identify point mutations in the regulatory regions of genes. The − 150 bp and + 150 bp regions of the genes were considered. The genome of strain SC5314 was used as a reference. The CAPRIB tool [30 (link)] was used to determine the amino acid changes that correlate with unresponsiveness to farnesol. However, BLASTP 2.12.0 was used with translated sequences annotated with funannotate instead of TBLASTN. Only proteins that share more than 85% identity and less than 1e− 10 were considered homologous. The SC5314 strain was used as a reference. Amino acid changes and strains were clustered according to a binary model in R.
The NCBI conserved domains database[61 ] was used to delineate the conserved domains of the studied proteins. PSIPRED 4[62 (link)] was used to generate secondary structure predictions and MEMSAT-SVM[63 (link)] to predict transmembrane regions of proteins. Functional links between proteins were detected by using STRING version 11.5 [64 (link)].
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Agar
Amino Acids
Candida albicans
Farnesol
Genes
Genome
Glucose
link protein
Medical Devices
Point Mutation
Protein Domain
Proteins
Reconstructive Surgical Procedures
Regulatory Sequences, Nucleic Acid
Strains
Trees
The standard compounds used for the GC analysis were thymol, trans-anethol, (+)-borneol, (−)-borneol, α-terpineol, L-carvone, (R)-(+)-limonene, eucalyptol, farnesol, neryl acetate, (±)-citronellal, citral, γ-terpinene, nerol, α-pinene, p-cymene, (−)-trans-caryophyllene, geraniol, geranyl acetate, carvacrol, eugenol, sabinene hydrate, bornyl acetate, linalyl acetate, myrcene and (±)-camphor and were purchased from Sigma-Aldrich (St. Louis, MO, USA). In addition, 1,1-Diphenyl-2-picryl-hydrazyl-hydrate (DPPH∙) was obtained from Sigma-Aldrich GmbH (Germany). All chemicals and solvents were analytical reagent grade.
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4-cymene
anethole
borneol
bornyl acetate
Camphor
carvacrol
carvone
citral
citronellal
d-Limonene
diphenyl
Eucalyptol
Eugenol
Farnesol
geraniol
geranyl acetate
linalyl acetate
myrcene
nerol
neryl acetate
sabinene
Solvents
Thymol
trans-caryophyllene
The analytical method was validated according to the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH) Q2(R2) guidelines [38 ]. Six calibration standards (Cal) and three quality control (QC) samples at different concentrations (QChigh, QCmed, and QClow) were prepared by serial dilution of separate stock solutions containing 7.3 mM (−)-β-pinene, 88.1 mM (+)-α-pinene, 7.3 mM α-terpinene, 4.9 mM β-caryophyllene, 5.2 mM β-damascone, 7.3 mM camphene, 6.6 mM citral, 128.0 mM citronellol, 5.0 mM citronellyl acetate, 105.1 mM β-damascenone, 7.3 mM limonene, 12.2 mM eugenol, 11.2 mM methyleugenol, 9.0 mM farnesol, 129.7 mM geraniol, 10.2 mM geranyl acetate, 19.4 mM linalool, 64.8 mM nerol, 10.2 mM neryl acetate, 7.5 mM p-cymene, 7.5 mM phenylethanol and 25.9 mM rose oxide in n-heptane. Cis-3-hexen-1-ol was added as an internal standard (IS) with a final concentration of 10 mM to each Cal and QC. For accuracy and precision Cal and QC samples were analysed on 5 separate days over a course of 2 weeks. QC samples were measured in duplicates. Accuracy was determined as a bias; intra-day and inter-day imprecision were calculated as the relative standard deviation (RSDR and RSDT, respectively) [39 ]. Specificity was demonstrated by spiking authentic rose oil samples and four different EO samples with the analytes at intermediate levels of the calibration range. A further spiking experiment was conducted by adding QChigh and QClow level concentrations to an authentic rose oil sample. The recovery effect (RE) was determined for the spiking experiments (Formula (1)) [40 (link)]. Retention index (RI) was determined by analysing a homologous series of n-alkanes (C8–C20, C21–C40, analytical standard) purchased from Sigma Aldrich (St. Louis, MO, USA). The RI was calculated according to the van den Dool and Kratz equation [41 (link)]. Peak resolution (Rs) was determined according to European Pharmacopeia (Ph. Eur.) 11.2 [42 ]. Limit of detection (LoD) and limit of quantification (LoQ) were calculated based on the standard deviation of the response and the slope of the calibration curve [38 ]. The method was tested for robustness by changing the split ratio, flow, detector temperature, inlet temperature and temperature ramp of the established methods. Furthermore, the method was transferred to different instruments.
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Alkanes
alpha-damascone
beta-caryophyllene
camphene
cis-3-hexenol
citral
citronellol
citronellyl acetate
Cymene
damascenone
Eugenol
Europeans
Farnesol
geraniol
geranyl acetate
Heptane
Homo sapiens
Limonene
linalool
methyleugenol
nerol
neryl acetate
Oxides
Pharmaceutical Preparations
Phenylethyl Alcohol
Retention (Psychology)
Technique, Dilution
Phenylethanol, limonene and α-terpinene (pract.) were purchased from Fluka Chemie GmbH (Buchs, Switzerland). Camphene (95%), β-damascone (>95%), citronellyl acetate (>95%), β-damascenone natural, (+)-β-pinene (analytical standard), (−)-β-pinene (99%), (+)-α-pinene (≥99%), (−)-α-pinene (analytical standard), farnesol (95%), geranyl acetate (>99%), linalool (97%), p-cymene (99%), rose oxide (cis/trans mixture) and cis-3-hexen-1-ol (internal standard (IS), 98%) were purchased from Sigma Aldrich (St. Louis, MO, USA). Eugenol and β-caryophyllene were obtained from Systema Natura GmbH (Flintbek, Germany). Citral (cis/trans mixture, >98%) and neryl acetate (>95%) were purchased from TCI Chemical (Eschborn, Germany). Citronellol (95%), geraniol (99%) and nerol (97%) were obtained from Acros Organics (Geel, Belgium), and methyleugenol and n-heptane (99.9%) were purchased from Carl Roth GmbH (Karlsruhe, Germany) and VWR chemicals (Schlieren, Switzerland), respectively. Authentic rose oil samples and other EOs were purchased in Swiss pharmacies and online. All samples were stored at room temperature and in brown glass vials. Helium 6.0, nitrogen 6.0 and hydrogen 5.0 gas were purchased from PanGas (Dagmersellen, Switzerland).
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4-cymene
alpha-damascone
beta-caryophyllene
camphene
cis-3-hexenol
citral
citronellol
citronellyl acetate
damascenone
Eugenol
Farnesol
geraniol
geranyl acetate
Helium-6
Hydrogen-5
Limonene
linalool
methyleugenol
n-heptane
nerol
neryl acetate
Nitrogen
Oxides
Phenylethyl Alcohol
Top products related to «Farnesol»
Sourced in United States, Germany, France, Sao Tome and Principe
Farnesol is a naturally occurring sesquiterpene alcohol. It is a colorless, oily liquid with a floral, balsamic aroma. Farnesol is used as a chemical intermediate in various industrial applications.
Sourced in United States, United Kingdom, Germany
Geranylgeraniol is a naturally occurring isoprenoid alcohol found in various plant species. It serves as a key intermediate in the biosynthesis of various plant compounds, including retinoids, carotenoids, and certain plant hormones. Geranylgeraniol is commonly used as a research tool in the study of these biological processes.
Sourced in United States, Germany, United Kingdom, Brazil, Italy, Macao, China, India, Belgium, France
Geraniol is a naturally occurring alcohol compound commonly found in the essential oils of various plant species, such as geraniums, lemongrass, and citronella. It is a colorless or pale yellow liquid with a floral, rose-like aroma. Geraniol is used as a fragrance component in personal care products and as a flavoring agent in food and beverage applications.
Sourced in United States, Germany, Italy, United Kingdom, China, Spain, France, Brazil, Switzerland, Poland, Australia, Hungary, Belgium, Sao Tome and Principe
Linalool is a naturally occurring terpene alcohol found in various plant species. It is a colorless to pale yellow liquid with a floral, citrus-like aroma. Linalool is commonly used as a fragrance ingredient in personal care products and as a flavoring agent in food and beverages. Its core function is as a chemical precursor and intermediate in the synthesis of other compounds.
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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
Sourced in United States, Germany, China
Nerolidol is a naturally occurring sesquiterpene alcohol found in essential oils of various plants. It is a colorless liquid with a floral, woody aroma. Nerolidol functions as a chemical standard and analytical reference material for chemical and biological research.
Sourced in United States, Germany, Italy, United Kingdom, Spain, Mexico, China, Brazil, Switzerland, Canada, Czechia
Limonene is a naturally occurring hydrocarbon found in the rinds of citrus fruits. It is commonly used as a solvent in laboratory settings due to its ability to dissolve a wide range of organic compounds.
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Penicillin is a type of antibiotic used in laboratory settings. It is a broad-spectrum antimicrobial agent effective against a variety of bacteria. Penicillin functions by disrupting the bacterial cell wall, leading to cell death.
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Streptomycin is a broad-spectrum antibiotic used in laboratory settings. It functions as a protein synthesis inhibitor, targeting the 30S subunit of bacterial ribosomes, which plays a crucial role in the translation of genetic information into proteins. Streptomycin is commonly used in microbiological research and applications that require selective inhibition of bacterial growth.
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P-cymene is a chemical compound used as a laboratory reagent. It is a colorless liquid with a distinctive odor. P-cymene is primarily used as a solvent and in the synthesis of other organic compounds. Its core function is to serve as a versatile chemical intermediate in various laboratory applications.