The largest database of trusted experimental protocols

Ficoll

Ficoll is a copolymer of sucrose and epichlorohydrin, commonly used in biochemical and cell biology applications.
It is frequently employed for density gradient centrifugation to isolate and purify cells, organelles, and other biological macromolecules.
Ficoll's versatile properties, including its ability to create density gradients, make it an indispensible tool for researchers studying a wide range of biological systems.
PubCompare.ai offers an AI-driven platform to help optimze Ficoll protocols, enabling users to easily locate the best published protocols and compare them to enhance reproducibility of their reserach.

Most cited protocols related to «Ficoll»

Protocol full text hidden due to copyright restrictions

Open the protocol to access the free full text link

Publication 2011
Antibodies B-Lymphocytes Basophils Cells Dendritic Cells Eosinophil Ficoll Flow Cytometry Granulocyte Progenitor Cells Hypaque Immunophenotyping ITGAM protein, human Lymph Megakaryocyte-Erythroid Progenitor Cells Megakaryocytes Monocytes Myeloid Progenitor Cells Natural Killer Cells Neutrophil Population Group Stem Cells, Hematopoietic T-Lymphocyte trizol
Human primary fibroblasts were derived from biopsied skin tissue samples. The fibroblasts were established and expanded with DMEM containing 10% autologous human serum. Using these fibroblasts, iPS cells were generated as described previously17 (link). Briefly, following electroporation of reprogramming factors with episomal vectors using the Neon system (Life Technologies), the cells were plated on a non-coated cell culture plate. iPS cells were induced by changing the medium to StemFit™. Twenty to thirty days after plating, iPS cell colonies were observed.
Blood cell-derived iPS cells were generated as described previously16 (link). Briefly, mononuclear cells were prepared from peripheral blood using the Ficoll-Paque PREMIUM (GE Healthcare) separation method. The cells were electroporated with episomal vectors using a Nucleofector 4D system (with P3 Primary Cell Kit, Lonza) and plated on rLN511E8-coated cell culture plates. The iPSCs were induced by changing the medium to StemFit™. Twenty to thirty days after plating, iPS cell colonies were observed. A similar method was used to generate Ff-hiPSCs from human cord blood (provided by the RIKEN Bioresource Center Cell Bank). We generated several clones of Ff-hiPSCs from each experiment.
The experimental protocols dealing with human subjects were approved by the institutional review board at our institute (Kyoto University Graduate School and Faculty of Medicine, Ethics Committee). Written informed consent was provided by each donor.
Publication 2014
BLOOD Blood Cells Cell Culture Techniques Cells Clone Cells Cloning Vectors Electroporation Episomes Ethics Committees Ethics Committees, Research Faculty, Medical Fibroblasts Ficoll Homo sapiens Human Induced Pluripotent Stem Cells Induced Pluripotent Stem Cells Neon Serum Skin Tissue Donors Umbilical Cord Blood
NK cells were cultured in NK cell media consisting of RPMI 1640 (Cellgro/Mediatech, Manassas, VA) supplemented with 50 IU/ml recombinant human IL-2 (Proleukin, Novartis Vaccines and Diagnostics, Inc), 10% Fetal Bovine Serum (Invitrogen, Carlsbad, CA), L-glutamine (Gibco/Invitrogen, Carlsbad, CA), and penicillin/streptomycin (Cellgro/Mediatech, Manassas, VA). NK cells were expanded from PBMC as previously described (Figure 2) [64] . Briefly, peripheral blood mononuclear cells (PBMC) were first isolated from buffy coats using Ficoll-Paque Plus (GE HealthCare, Piscataway, NJ). PBMC were co-cultured in T-75 flasks (Corning, Corning, NY) with irradiated (100 cGy) K562 aAPCs at a ratio of 1∶2 (PBMC∶aAPC) in NK cell media at 2×105 PBMC/mL. Cultures were refreshed with half-volume media changes every two to three days, and re-stimulated with aAPCs at ratio of 1∶1 every seven days. When necessary, a portion of the expanding cells was carried forward for subsequent stimulations, and the remaining cells cryopreserved. NK cell expansion was calculated from the resulting cultures as if all cells were carried forward in the expansion. Where indicated in Figure 3B and D, expansion cultures were initiated from purified NK cells instead of unfractionated PBMC, or T cells were depleted from the expansion culture prior to the 3rd stimulation at day 14.
Full text: Click here
Publication 2012
aldesleukin Cells Culture Media Diagnosis Familial Adenomatous Polyposis, Attenuated Fetal Bovine Serum Ficoll Glutamine Natural Killer Cells PBMC Peripheral Blood Mononuclear Cells Penicillins Proleukin Streptomycin T-Lymphocyte Vaccines

Protocol full text hidden due to copyright restrictions

Open the protocol to access the free full text link

Publication 2014
Biopsy BLOOD Blood Cells Bones Brain Cells Circulating Neoplastic Cells Collagenase Erythrocytes Ficoll Growth Factor Heparin Homo sapiens Leukocytes Liver Malignant Neoplasms matrigel Neoplasm Metastasis Nodes, Lymph Organoids Patients Pleural Effusion Prostate Prostate Cancer Stem Cells Tissues Type II Mucolipidosis Urinary Bladder
All subject samples were obtained by member COG institutions after written consent was obtained from the parents/guardians of minors upon enrolling in the trial. The study was overseen by the Institutional Review Board at Fred Hutchinson Cancer Research Center (protocol 1642, IR file no. 5236). Data on selected clinical (for example, age, presenting hematological indices and cytogenetic classification) and molecular (for example, KIT, RAS genes, NPM, WT1, CEBPA and IDH1 mutations and FLT3-ITD allelic ratios) features were clinically available before genomic analyses and are included in the clinical data file available at the TARGET data matrix. 177 cases from the adult de novo AML TCGA data set3 (link) were selected for analysis after exclusion of those with French-American-British (FAB) system M3 morphology (n = 20) or BCR-ABL1 gene fusion (n = 3), as these subtypes are not represented in the COG–TARGET AML cohort. The age distributions for the TARGET WGS discovery group and the TCGA cohort are outlined in Supplementary Table 3. DNA and RNA were extracted from Ficoll-enriched, viably cryopreserved samples from the COG biorepository using the AllPrep Extraction Kit (Qiagen). Nucleic acids were quantified by NanoDrop (Thermo Scientific). RNA samples were tested for quality and integrity using the Agilent 2100 Bioanalyzer (Agilent Technologies). The integrity of DNA samples was confirmed by visualization on a 0.8% agarose gel.
Publication 2017
Adult Alleles CEBPA protein, human Ethics Committees, Research Ficoll FLT3 protein, human Gene Fusion Genes, ras Genome Legal Guardians Malignant Neoplasms Mutation Nucleic Acids Parent Sepharose

Most recents protocols related to «Ficoll»

Not available on PMC !

EXAMPLE 36

Peripheral blood mononuclear cells were prepared from blood samples obtained from llama No. 45 and No. 46 using Ficoll-Hypaque according to the manufacturer's instructions. Next, total RNA extracted was extracted from these cells and used as starting material for RT-PCR to amplify Nanobody encoding gene fragments. These fragments were cloned into phagemid vector pAX50. Phage was prepared according to standard methods (see for example the prior art and applications filed by applicant cited herein) and stored after filter sterilization at 4° C. for further use.

Full text: Click here
Patent 2024
Bacteriophages BLOOD Cloning Vectors DNA Library Ficoll Genes Hypaque Llamas PBMC Peripheral Blood Mononuclear Cells Reverse Transcriptase Polymerase Chain Reaction Sterilization
Not available on PMC !

EXAMPLE 12

Peripheral blood mononuclear cells were prepared from blood samples obtained from llama No. 146 and No. 147 using Ficoll-Hypaque according to the manufacturer's instructions. Next, total RNA extracted was extracted from these cells and used as starting material for RT-PCR to amplify Nanobody encoding gene fragments. These fragments were cloned into phagemid vector pAX50. Phage was prepared according to standard methods (see for example the prior art and applications filed by applicant cited herein) and stored after filter sterilization at 4° C. for further use.

Full text: Click here
Patent 2024
Bacteriophages BLOOD Cloning Vectors DNA Library Ficoll Genes Hypaque Llamas PBMC Peripheral Blood Mononuclear Cells Reverse Transcriptase Polymerase Chain Reaction Sterilization

Example 25

This experiment was to evaluate the effect of killing cancer cells by treating MDA-MB-231 cells (human breast cancer cells) with the test substance GI-101 alone or in combination with the TGF-beta signal inhibitor Vactosertib substance in an in vitro environment.

MDA-MB-231 cells were purchased from the Korea cell line bank and cultured in RPMI1640 medium (Gibco) containing 10% FBS (Gibco) and 1% antibiotic/antifungal agent (Gibco). For use in cancer cell killing test, the cells were harvested using trypsin (Gibco), and then suspended in RPMI1640 medium, and then dead cells and debris were removed using Ficoll (GE Healthcare Life Sciences) solution. The cells suspended in RPMI1640 medium were carefully layered on ficoll solution. The cell layer with a low specific gravity formed by centrifuging at room temperature at 350×g for 20 minutes was collected with a pipette, washed with PBS (Gibco), and then centrifuged at room temperature at 350×g for 5 minutes. The separated cell layer was made into a suspension of 2×105 cells/mL with FBS-free RPMI1640 medium. The cancer cell suspension was stained at 37° C. for 1 hour using CELLTRACKER™ Deep Red Dye (Thermo) in order to track proliferation or inhibition of the proliferation of cancer cells. After staining, it was centrifuged at 1300 rpm for 5 minutes, and then it was washed with FBS-free RPMI1640 medium, and then suspended in RPMI1640 medium containing 5% human AB serum (Sigma) to a concentration of 2×105 cells/mL. The cancer cell suspension was added to each well of a 96-well microplate (Corning) by 50 μl (1×104 cells), and then stabilized in an incubator (37° C., 5% CO2) for 1 hour.

Human peripheral blood mononuclear cells (PBMCs) were used in order to identify the effect of killing cancer cells by GI-101. The human PBMCs were purchased from Zen-Bio, and the PBMCs stored frozen were placed in a 37° C. water bath, and thawed as quickly as possible, and then transferred to RPMI1640 medium (Gibco) containing 10% FBS (Gibco) and 1% antibiotic/antifungal agent (Gibco), and centrifuged at 1300 rpm for 5 minutes. The separated cell layer was suspended in RPMI1640 medium, and then dead cells and debris were removed using Ficoll (GE Healthcare Life Sciences) solution in the same manner as the cancer cell line. The cells suspended in RPMI1640 medium were carefully layered on ficoll solution. The cell layer with a low specific gravity formed by centrifuging at room temperature at 350×g for 20 minutes was collected with a pipette, washed with PBS (Gibco), and then centrifuged at room temperature at 350×g for 5 minutes. The separated cell layer was suspended in RPMI1640 medium containing 5% human AB serum (Sigma) to a concentration of 5×105 cells/mL. The PBMC suspension was dispensed 50 μl into each well of a 96-well microplate (Corning) in which cancer cell line has been dispensed, depending on the conditions.

In order to identify the effect of killing the cells, a CytoTox Green reagent (INCUCYTE™ CytoTox Green, Satorius) that binds to the DNA of cells to be killed was prepared in 1 μl per 1 mL of RPMI1640 medium containing 5% human AB serum (Sigma). The prepared medium was used for dilution of the test substance, and the effect of killing the cells could be quantitatively identified by staining the cells to be killed when the test substance was co-cultured with cancer cell lines and PBMCs.

Vactosertib power was dissolved in DMSO (Sigma) to a concentration of 48.4 mM, and diluted using RPMI1640 medium containing a CytoTox Green reagent, and then used in the experiment at a final concentration of 12.1 nM (50 μL) per well of a 96-well microplate.

GI-101 was diluted by ⅓ using RPMI1640 medium containing a CytoTox Green reagent, and then used in the experiment at final concentrations of 0.4 nM, 1.2 nM, 3.7 nM, 11.1 nM, 33.3 nM, and 100 nM by 50 μl per well of a 96-well microplate.

The prepared test substance was placed in each well of a 96-well microplate in which cancer cell lines and PBMCs were dispensed depending on the conditions, and cultured in an incubator (37° C., 5% CO2) for 24 hours, and the proliferation or death of cancer cells was observed through the real-time cell imaging analysis equipment IncuCyte S3 (Satorious). The death of cancer cells was quantified by the integrated intensity of the cells stained in green with a CytoTox Green reagent.

As a result, it was identified that the group having received a combination of GI-101 and Vactosertib exhibited the excellent effect of killing cancer cells as compared with the group having received each drug alone.

Full text: Click here
Patent 2024
A-101 Antibiotics Antifungal Agents Bath Cell Death Cell Lines Cell Proliferation Cells Ficoll Freezing Gastrointestinal Cancer Homo sapiens Malignant Neoplasms Mammary Carcinoma, Human MCF-7 Cells MDA-MB-231 Cells PBMC Peripheral Blood Mononuclear Cells PER1 protein, human Pharmaceutical Preparations Psychological Inhibition Serum Sulfoxide, Dimethyl Technique, Dilution Transforming Growth Factor beta Trypsin vactosertib
Not available on PMC !

EXAMPLE 30

Peripheral blood mononuclear cells were prepared from blood samples obtained from llama No. 149 using Ficoll-Hypaque according to the manufacturer's instructions. Next, total RNA extracted was extracted from these cells and used as starting material for RT-PCR to amplify Nanobody encoding gene fragments. These fragments were cloned into phagemid vector pAX50. Phage was prepared according to standard methods (see for example the prior art and applications filed by applicant cited herein) and stored after filter sterilization at 4° C. for further use.

Full text: Click here
Patent 2024
Bacteriophages BLOOD Cloning Vectors DNA Library Ficoll Genes Hypaque Llamas PBMC Peripheral Blood Mononuclear Cells Reverse Transcriptase Polymerase Chain Reaction Sterilization
Not available on PMC !

EXAMPLE 24

Peripheral blood mononuclear cells were prepared from blood samples obtained from llama No. 149 using Ficoll-Hypaque according to the manufacturer's instructions. Next, total RNA extracted was extracted from these cells and used as starting material for RT-PCR to amplify Nanobody encoding gene fragments. These fragments were cloned into phagemid vector pAX50. Phage was prepared according to standard methods (see for example the prior art and applications filed by applicant cited herein) and stored after filter sterilization at 4° C. for further use.

Full text: Click here
Patent 2024
Bacteriophages BLOOD Cloning Vectors DNA Library Ficoll Genes Hypaque Llamas PBMC Peripheral Blood Mononuclear Cells Reverse Transcriptase Polymerase Chain Reaction Sterilization

Top products related to «Ficoll»

Sourced in Sweden, United States, United Kingdom, Germany, Canada, Japan, Italy, China, France, Australia, Belgium, Austria, Spain, Switzerland, Norway, New Zealand, Denmark, Finland, Georgia
Ficoll-Paque PLUS is a sterile, ready-to-use medium for the isolation of mononuclear cells from blood or bone marrow by density gradient centrifugation. It is a polysucrose and sodium diatrizoate solution with a density of 1.077 g/mL.
Sourced in Sweden, United States, United Kingdom, Germany, Canada, Belgium, Italy, Australia, Austria, France, Japan, Singapore, Denmark
Ficoll-Paque is a density gradient medium used for the isolation and purification of cells, such as mononuclear cells, from whole blood or other biological samples. It is designed to separate different cell types based on their density differences during centrifugation.
Sourced in United States, China, United Kingdom, Germany, Australia, Japan, Canada, Italy, France, Switzerland, New Zealand, Brazil, Belgium, India, Spain, Israel, Austria, Poland, Ireland, Sweden, Macao, Netherlands, Denmark, Cameroon, Singapore, Portugal, Argentina, Holy See (Vatican City State), Morocco, Uruguay, Mexico, Thailand, Sao Tome and Principe, Hungary, Panama, Hong Kong, Norway, United Arab Emirates, Czechia, Russian Federation, Chile, Moldova, Republic of, Gabon, Palestine, State of, Saudi Arabia, Senegal
Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
Sourced in United States, China, United Kingdom, Germany, France, Canada, Japan, Australia, Italy, Switzerland, Belgium, New Zealand, Austria, Netherlands, Israel, Sweden, Denmark, India, Ireland, Spain, Brazil, Norway, Argentina, Macao, Poland, Holy See (Vatican City State), Mexico, Hong Kong, Portugal, Cameroon
RPMI 1640 is a common cell culture medium used for the in vitro cultivation of a variety of cells, including human and animal cells. It provides a balanced salt solution and a source of essential nutrients and growth factors to support cell growth and proliferation.
Sourced in United States, China, Germany, United Kingdom, Japan, France, Canada, Australia, Italy, Switzerland, Belgium, New Zealand, Spain, Israel, Sweden, Denmark, Macao, Brazil, Ireland, India, Austria, Netherlands, Holy See (Vatican City State), Poland, Norway, Cameroon, Hong Kong, Morocco, Singapore, Thailand, Argentina, Taiwan, Province of China, Palestine, State of, Finland, Colombia, United Arab Emirates
RPMI 1640 medium is a commonly used cell culture medium developed at Roswell Park Memorial Institute. It is a balanced salt solution that provides essential nutrients, vitamins, and amino acids to support the growth and maintenance of a variety of cell types in vitro.
Sourced in United States, Sweden, United Kingdom, Germany, China, Norway, Spain, Canada, Italy, Austria
Ficoll-Hypaque is a density gradient medium used for the isolation of mononuclear cells from whole blood, bone marrow, or other tissues. It is a sterile, pyrogen-free solution consisting of Ficoll polymer and sodium diatrizoate.
Sourced in United States, Sweden, United Kingdom, Germany, France, Canada, Japan
Ficoll is a laboratory reagent used for the separation and isolation of cells and other biological particles. It is a synthetic, high-molecular-weight, neutral, and hydrophilic polysaccharide that forms density gradients when centrifuged. This property allows for the separation of different cell types or other biological materials based on their density.
Sourced in United States, United Kingdom, Germany, China, France, Canada, Australia, Japan, Switzerland, Italy, Belgium, Israel, Austria, Spain, Netherlands, Poland, Brazil, Denmark, Argentina, Sweden, New Zealand, Ireland, India, Gabon, Macao, Portugal, Czechia, Singapore, Norway, Thailand, Uruguay, Moldova, Republic of, Finland, Panama
Streptomycin is a broad-spectrum antibiotic used in laboratory settings. It functions as a protein synthesis inhibitor, targeting the 30S subunit of bacterial ribosomes, which plays a crucial role in the translation of genetic information into proteins. Streptomycin is commonly used in microbiological research and applications that require selective inhibition of bacterial growth.
Sourced in United States, United Kingdom, Germany, China, France, Canada, Japan, Australia, Switzerland, Italy, Israel, Belgium, Austria, Spain, Brazil, Netherlands, Gabon, Denmark, Poland, Ireland, New Zealand, Sweden, Argentina, India, Macao, Uruguay, Portugal, Holy See (Vatican City State), Czechia, Singapore, Panama, Thailand, Moldova, Republic of, Finland, Morocco
Penicillin is a type of antibiotic used in laboratory settings. It is a broad-spectrum antimicrobial agent effective against a variety of bacteria. Penicillin functions by disrupting the bacterial cell wall, leading to cell death.
Sourced in United States, Germany, United Kingdom, China, Canada, France, Japan, Australia, Switzerland, Israel, Italy, Belgium, Austria, Spain, Gabon, Ireland, New Zealand, Sweden, Netherlands, Denmark, Brazil, Macao, India, Singapore, Poland, Argentina, Cameroon, Uruguay, Morocco, Panama, Colombia, Holy See (Vatican City State), Hungary, Norway, Portugal, Mexico, Thailand, Palestine, State of, Finland, Moldova, Republic of, Jamaica, Czechia
Penicillin/streptomycin is a commonly used antibiotic solution for cell culture applications. It contains a combination of penicillin and streptomycin, which are broad-spectrum antibiotics that inhibit the growth of both Gram-positive and Gram-negative bacteria.

More about "Ficoll"

Ficoll is a versatile copolymer of sucrose and epichlorohydrin, widely used in biochemical and cell biology applications.
It is an indispensable tool for researchers, enabling them to isolate and purify cells, organelles, and other biological macromolecules through density gradient centrifugation.
Ficoll-Paque PLUS and Ficoll-Paque are common Ficoll-based products used for this purpose.
The properties of Ficoll, such as its ability to create density gradients, make it a valuable asset in studying a diverse range of biological systems.
Researchers often employ Ficoll in conjunction with other media like RPMI 1640 and FBS (Fetal Bovine Serum) to optimize their experimental setups.
Ficoll-Hypaque, another Ficoll-based solution, is also widely used for cell separation and purification.
The addition of antibiotics like Penicillin and Streptomycin to Ficoll-based protocols helps maintain the sterility and viability of the isolated cells and biological samples.
To enhance the reproducibility and efficiency of Ficoll-based research, the AI-driven platform PubCompare.ai offers an innovative solution.
It empowers researchers to easily locate the best published protocols, compare them, and optimize their Ficoll procedures, leading to more reliable and impactful findings.