IA
s/PLP 139-151 and IA
s/Theiler's murine encephalomyelitis virus (TMEV) viral capsid protein
2 70-86, IA
b/MOG 35-55, and IA
k/Myhc-α 334-352 and IA
k/Bovine ribonuclease (RNase) 43-56 tetramers were generated as previously described [5 (
link),11 (
link),25 (
link),28 ]. While we generated the IA
k constructs [11 (
link),29 (
link)], the IA
s and IA
b constructs were kindly gifted by Dr. Vijay Kuchroo, Harvard University, Boston, MA. Briefly, α and β constructs for each IA allele containing the sequences of the respective peptides were expressed in a Baculovirus system using Sf9 insect cells (Invitrogen, Carlsbad, CA) and soluble MHC molecules were obtained [5 (
link),11 (
link)]. IA
s, IA
b and IA
k monomers were purified on antibody columns prepared using MKS4, M5114, and 10-2.16 (Bio × Cell, West Lebanon, NH), respectively and the protein yield generally ranged from 0.5 mg to 1 mg/L [5 (
link),11 (
link),25 (
link),28 ]. After concentrating, the soluble MHC proteins were biotinylated using biotin protein ligase at an optimized concentration of 25 μg/10 nmol of substrate as recommended by the manufacturer (Avidity, Denver, CO). The biotinylated proteins were then incubated with SA conjugated with a fluorescent dye - fluorescein isothiocyanate (FITC), phycoerythrin (PE) or allophycocyanin (APC) - at a 4:1 ratio for one hour on ice. The reagents thus prepared are referred to as tetramers. To prepare dextramers, biotinylated soluble monomers of all three IA alleles (IA
s, IA
b and IA
k) containing the peptides were coupled to activated dextran backbones (kindly provided by Immudex Aps, Copenhagen, Denmark) at various molar ratios in 1 × Tris Hcl 0.05 M, pH 7.2 for 30 minutes at room temperature (RT) and the preparation of fluorochrome-labeled dextran backbone has been previously described [16 (
link)]. Fluorochrome-labeled dextramers were prepared by mixing biotinylated IA monomers with dextran molecules. For example, dextramer-PE reagents were prepared by mixing 1.6 × 10
-11 moles of dextran-PE molecules with 3.17 × 10
-10 moles of IA
s monomers which resulted a molar ratio of 1:20. All the reagents were aliquoted and stored at -80°C or 4°C until further use.
Massilamany C., Upadhyaya B., Gangaplara A., Kuszynski C, & Reddy J. (2011). Detection of autoreactive CD4 T cells using major histocompatibility complex class II dextramers. BMC Immunology, 12, 40.