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Inositol Phosphates

Inositol Phosphates: A Comprehensive Exploration.
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Most cited protocols related to «Inositol Phosphates»

Docking studies were carried out with AutoDock4 (ref. 64 (link)), utilizing the AutoDockTools 1.5.6 GUI. Non-polar hydrogens and Gasteiger atomic charges were added to the HDAC3:SMRT DAD atomic coordinates (PDB ID: 4A69) in AutoDockTools. The inositol phosphate-binding site was as defined in ref. 2 (link). Probes were calculated at every 0.375 Å grid position of a grid box (box size x, y, z=21.406, 50.64, 23.036 Å, respectively), centred upon the inositol ring. The docking of the inositol phosphates was run using the Lamarckian genetic algorithm in AutoDock4. Other parameters were set to the default values.
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Publication 2016
Binding Sites Hydrogen Inositol Inositol Phosphates NCOR2 protein, human Reproduction

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Publication 2016
Biological Assay BLOOD Blood Platelets Citrates Donors Enzyme-Linked Immunosorbent Assay Healthy Volunteers Homo sapiens Inositol Phosphates Physiological Stress Platelet-Rich Plasma Thrombosis trimethyloxamine
All steps in the extraction until elution were performed at 4°C to avoid
acid degradation of inositol pyrophosphates. First, the titanium dioxide
(TiO2) beads (Titansphere TiO 5 µm; GL Sciences) were
weighed and prepared by washing once in water then once in 1 M perchloric acid
(PA). Generally 4–5 mg of beads was used for each sample. After
centrifuging at 3500g for 1 min, the beads were resuspended in
PA.
Cells were harvested as appropriate and washed in PBS. A small aliquot was
removed for later protein quantification, enabling normalization. The cells were
pelleted and extracted using 800 µl PA (pH 1). After resuspension in the
acid, samples were kept on ice with vortexing for 10 min, then centrifuged at 18
000g for 5 min, at 4°C. The supernatants were
removed into new eppendorfs and TiO2 beads added (4 mg in 50
μl PA). Samples were vortexed briefly then rotated at 4°C for 15
min; the inositol phosphates and other molecules were adsorbed onto the beads at
this point. Beads were pelleted by centrifuging at 3500g for 1
min, and then washed twice in PA with supernatants discarded. To elute, 200
µl 10% ammonium hydroxide (pH 10) was added to the beads. Samples
were vortexed briefly before rotation for 5 min. After centrifuging, the
supernatants (containing the inositol phosphates) were transferred into new
eppendorfs. The elution procedure was repeated on the beads to ensure full
recovery, and the second supernatants added to the first. The samples were then
vacuum evaporated to 50 µl for PAGE or other further analysis.
Alternatively, samples were evaporated until at pH 7 then stored at 4°C
or −20°C.
The protocol used for TiO2 extraction from
Dictyostelium PA extracts, diluted InsP6standards and radioactive 3H-Ins(1,4,5)P3 (PerkinElmer) or
3H-InsP6 (Amersham) was the same as above, except that
the standards were directly added to 1 ml PA. For the radioactive experiments, 5
ml of Ultima Gold (PerkinElmer) scintillation cocktail was added to the
TiO2 eluate and the samples were counted in a
β-counter.
Mouse liver and brain were collected from newborn (P1) pups and rapidly frozen.
PA (2 ml) was added to approximately 0.5 g of tissues, equivalent to one liver
or two brains. The organs were rapidly homogenized in an electric blender and
incubated in ice for 10 min. The samples were centrifuged at more than 15
000g for 15 min and the supernatant used for
TiO2 bead extraction.
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Publication 2015
Ammonium Hydroxide Brain Cells Diphosphates Electricity Freezing Gold Infant, Newborn Inositol Inositol Phosphates Liver Mice, Laboratory Perchloric Acid Radioactivity Staphylococcal Protein A Tissues titanium dioxide
The full Methods provides detailed information about all experimental procedures, including: (1) description of protein preparation, purification, and mutagenesis; (2) description of protein crystallization, data collection, and structure determination; (3) details for conducting in vitro radioligand binding assay; (4) details for conducting yeast-two-hybrid assay; (5) description of inositol phosphate purification scheme; (6) details for conducting in vitro inositol phosphate reconstitution assays; (7) description of structural mass spectrometry analysis of the intact protein complex; (8) description of nuclear magnetic resonance NMR analysis of the inositol phosphate; and (9) description of mass spectrometry analysis of the inositol phosphate.
Publication 2010
Biological Assay Crystallization Inositol Phosphates Mass Spectrometry Mutagenesis Proteins Proto-Oncogene Mas Radioligand Assay Spectrometry Yeast Two-Hybrid System Techniques
The structures of all inositol phosphates and diphosphoinositol phosphates described in this study are numbered according to the 1d-numbering convention and are shown in Supplementary Figure S1.
InsP6 was obtained from Merck Millipore (Product No. 407125). An acid-hydrolysate of phytate (Sigma P-8810) was prepared and used as chromatographic standard according to Madsen et al. [21 (link)]. All InsP5 isomers used as substrate for ITPK1 were obtained from Sichem as decasodium salts. Ins(1,3,4,5,6)P5 obtained from Sichem showed evidence of phosphate migration between cis-vicinal hydroxyls. Ins(1,3,4,5,6)P5 used as substrate for IPK1 was synthesized according to published procedures [22 (link)] and did not show evidence of phosphate migration. InsP4s and InsP3s were obtained from Cayman Chemical Company or were synthesized according to published procedures [23 (link)]. Comparisons made between different enantiomers of enantiomeric pairs were performed with compounds obtained from one source only. Diphosphoinositol phosphates (Supplementary Figure S1): 1-InsP7, 3-InsP7, 5-InsP7 and 5PP-Ins(1,3,4,6)P4 were synthesized similarly to published procedures [24 (link)]. 4-InsP7 and 6-InsP7 were synthesized by Dr Henning Jessen, Institute of Organic Chemistry, and the Centre for Integrative Biological Signalling Studies, University of Freiburg, Germany. Acid-catalyzed migration of phosphate on 32P-labeled InsPs was performed according to Stephens and Downes [25 (link)]. 32P-labeled InsPs were used directly for HPLC without processing to remove nucleotides.
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Publication 2020
Acids Biopharmaceuticals Caimans Chromatography Conferences Fondaparinux Sodium High-Performance Liquid Chromatographies Hydroxyl Radical inositol 1,4-bisphosphate 5-phosphorothioate inositol heptakisphosphate Inositol Phosphates InsP5 Isomerism Nucleotides Phosphates Phytate

Most recents protocols related to «Inositol Phosphates»

The tachykinin receptors elicit intracellular signalling responses primarily through coupling to, and the activation of, Gαq/11 G proteins. The activation of these G proteins results in the generation of inositol phosphates (IPs; inositol trisphospate and its metabolites inositol bisphosphate and inositol monophosphate). Loading of cells with a radiolabelled precursor ([3H]-myo-inositol) ensures that the generated IPs are radiolabelled. These can be isolated using ion exchange chromatography and their radioactivity measured, with the amount of radiolabelled IP generated (i.e., the level of radioactivity measured) being proportional to the signalling activity of the receptor [48 ].
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Publication 2023
Cells GTP-Binding Protein alpha Subunit, Gq GTP-Binding Proteins Inositol Inositol Phosphates Ion-Exchange Chromatographies Protoplasm Radioactivity Tachykinin Receptor
At 12 h post-transfection, the culture media were replaced with reduced inositol Media 99 (Thermo Fisher Scientific, Waltham, MA, USA), supplemented with 1% FCS and 0.5 μCi/well [3H]myo-inositol (PerkinElmer, Waltham, MA, USA). Cells were then incubated for a further 12 h at 37 °C before replacing the media with Buffer I (DMEM supplemented with 20 mM HEPES, 10 mM LiCl (to inhibit IP breakdown) and 0.1% bovine serum albumin) and incubating for 30 min at 37 °C. Media were then aspirated, and cells were incubated with ligands prepared in Buffer I.
For the measurement of receptor activation, cells were incubated for 1 h at 37 °C in the presence of vehicle (0.1% DMSO), a range of concentrations of DOTA-[Thi8,Met(O2)11]SP or native ligands for dose–response analyses. For single-concentration analyses, cells were incubated with 1 µM [NK1R, NK2R, NK3R and empty vector) or 10 µM [MRGPRX2 and empty vector] DOTA-[Thi8, Met(O2)11]-SP or native ligands. For the measurement of receptor antagonism, cells were incubated for 30 min at 37 °C in the presence of vehicle (0.1% DMSO), 1 µM DOTA-[Thi8,Met(O2)11]SP or 1 µM talnetant ((S)-N-(1-phenylpropyl)-3-hydroxy-2-phenylquinoline-4-carboxamide, also known as SB-223412; a non-peptide antagonist of the NK3R [49 (link)]) prior to stimulation for 1 h at 37 °C with native ligands at close to their EC50 concentration (Table 1; MRGPRX2, 10 µM SP; NK2R, 10 nM NKA and NK3R, 30 nM NKB).
Following ligand incubation, cells were lysed using incubation in 10 mM formic acid for 60 min at 4 °C. Lysates were transferred to tubes containing 100–200 mesh Dowex 1X8 resin (Sigma-Aldrich, St. Louis, MO, USA) and incubated for 5 min. The resin was washed twice with water and twice with wash buffer (60 mM ammonium formate, 5 mM sodium tetraborate) before elution of the radiolabelled inositol phosphates from the beads in 1 mL elution buffer (1 M ammonium formate/0.1 M formic acid). A total of 1.5 mL scintillation fluid (OptiPhase HiSafe3) (PerkinElmer, Waltham, MA, USA) was then added and radioactivity (decays per minute; dpm) was determined with liquid scintillation counting using a Packard Tri-Carb 4810TR Liquid Scintillation Analyser (PerkinElmer, Waltham, MA, USA).
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Publication 2023
Acids antagonists Buffers Cardiac Arrest Catabolism Cells Cloning Vectors Culture Media Dowex formic acid formic acid, ammonium salt HEPES Inositol Inositol Phosphates Ligands Peptides Radioactivity Resins, Plant SB 223412 Serum Albumin, Bovine sodium borate Sulfoxide, Dimethyl TACR3 protein, human Talnetant tetraxetan Transfection

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Publication 2023
Cells Chimera HEK293 Cells Inositol Phosphates Plasmids Tissue Donors Transfection
The polypeptide substrate used for PDK1 was T308tide (KTFCGTPEYLAPEVRR; > 75% purity). The peptide substrate used for SGK and Akt was KK-Crosstide (KKGRPRTSSFAEG). Other polypeptides used were PIFtide (REPRILSEEEQEMFRDFDYIADWS), a peptide derived from the PRK2 HM (a PDK1 substrate), and substrates GS-022 (RRRQFSLRRKAK), and GS-023 (RRRQFSLRRKA-K(5-FAM). Peptides used in AlphaScreen interaction assays were biotin-PIFtide (biotin- REPRILSEEEQEMFRDFDYIADWS) and biotin-GS-022 (biotin-RRRQFSLRRKAK). Peptides were synthesized by Pepscan. PS210 was synthesized by us and characterized previously (29 (link), 30 (link)) and PS653 was from Maybridge (32 (link)). Biotin-C6-PIP3 was from Echelon Biosciences. IP5 (64 (link)), scyllo-IP5 (64 (link)), 2-O-(2-aminoethyl)-IP5 (AMR1474) (43 (link)), 2-O-butyryl-IP5 (HYG7) (65 (link)) and 2-O-benzoyl-IP5 (HYG8) (66 (link)) were synthesized and characterized as previously reported. IP6 was obtained commercially (Sigma) and further purified by gradient elution from a Q-Sepharose Fast-Flow resin and isolated as the triethylammonium salt before use. The syntheses and characterization of 2-O-acetyl-IP5 (HYG6) and 2-O-butyl-IP5 (HYG14) are described in the Supplementary Materials. All inositol phosphates and derivatives were fully characterized by 1H, 13C and 31P NMR spectroscopy and used as their triethylammonium salts. Antibodies were purchased from Cell Signaling (#13038, #5642) and secondary antibodies from LI-COR (926-68022 and 926-32213). AlphaScreen beads were purchased from Perkin Elmer (6760619, 6765301, 6760106). SYPRO-Orange 5000x was purchased from Invitrogen™ (S6650). Valsartan was purchased from Sigma (SML0142) and des(oxopentyl)valsartan from Carbosynth. Complete protease inhibitor cocktail tablets were from Roche. Protein concentration was determined using Bio-Rad Protein Assay Dye Reagent Concentrate (#50000069). Ni-NTA was from Jena Bioscience and glutathione sepharose resin was from GE Healthcare. SNAP-Cell® TMR-Star was purchased from NEB (#S9105). Human embryonic kidney (HEK) 293 cells (ATCC) were cultured in Dulbecco’s modified Eagle’s medium containing 10% fetal bovine serum and PenStrep. Mammalian tissue culture materials were from Greiner and JETBiofil. Insect cell expression system and all the insect cell related material were from Invitrogen (Thermo Fisher Scientific). DNA constructs used for transient transfection were purified from bacteria using a Qiagen plasmid Maxi kit.
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Publication 2023
Anabolism Antibodies Bacteria Biological Assay Biotin Cells Culture Media derivatives Eagle Embryo Fetal Bovine Serum Glutathione Homo sapiens Inositol Phosphates Insecta Kidney Mammals PDK1 protein, human Peptides Plasmids Polypeptides Protease Inhibitors Proteins PS210 Recombinant DNA Resins, Plant RRAD protein, human Salts Sepharose Spectroscopy, Nuclear Magnetic Resonance Tissues Transfection Transients Valsartan
Inositol phosphates and assay reagents for kinase assays were obtained from commercial sources described [9 (link)], or, for Ins(1,4,6)P3/Ins(3,4,6)P3 and Ins(1,4,5,6)P4/Ins(3,4,5,6)P4 enantiomeric pairs, as described (Supplementary Figures S2, S3).
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Publication 2023
Biological Assay Inositol Phosphates Phosphotransferases

Top products related to «Inositol Phosphates»

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[3H]myo-inositol is a radiolabeled compound used as a tracer in various biochemical and cell biology applications. It is a tritium-labeled form of the naturally occurring sugar alcohol myo-inositol. This product can be utilized in experiments that require the detection and quantification of myo-inositol and its metabolites.
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Myo-[2-3H]inositol is a radioactive labeled compound used for research purposes. It is a tritium-labeled form of the inositol molecule, which is a type of sugar alcohol. Myo-[2-3H]inositol is used as a tracer in various biochemical and cell biology studies to investigate the role of inositol and its derivatives in cellular processes.
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The IP-One Tb HTRF kit is a lab equipment product designed for the detection and quantification of Inositol Phosphates (IP). The kit utilizes the Homogeneous Time-Resolved Fluorescence (HTRF) technology to measure IP levels in biological samples.
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The CarboPac PA200 column is a high-performance anion-exchange chromatography column designed for the separation and analysis of carbohydrates. It features a pellicular anion-exchange resin with a polystyrene-divinylbenzene substrate and a quaternary ammonium functional group. The column is suitable for the analysis of a wide range of mono-, oligo-, and polysaccharides.
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The IP-One HTRF kit is a laboratory equipment product from PerkinElmer designed to measure inositol phosphate levels in cells. It utilizes Homogeneous Time-Resolved Fluorescence (HTRF) technology to quantify the formation of inositol-1-phosphate, a messenger molecule involved in cellular signaling pathways.
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GraphPad Prism 5 is a data analysis and graphing software. It provides tools for data organization, statistical analysis, and visual representation of results.
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AG1-X8 resin is an ion exchange resin commonly used in various laboratory applications. It is a strong anion exchange resin with a quaternary ammonium functional group. The resin has a high capacity and is suitable for the separation and purification of a wide range of ionic species.
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The Microcon Ultracel YM-30 is a laboratory filtration device designed for the concentration and purification of macromolecules, such as proteins and peptides. It operates using a centrifugal force to separate and concentrate samples through a semi-permeable membrane with a molecular weight cutoff of 30 kDa.
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Sodium phytate is a chemical compound commonly used in laboratory settings. It functions as a chelating agent, capable of forming stable complexes with various metal ions. This property makes it useful in applications where the controlled sequestration of metal ions is required.
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A liquid scintillation counter is a scientific instrument used to measure the radioactivity of liquid samples. It detects and quantifies the presence of radioactive isotopes in a sample by measuring the light flashes, or scintillations, produced when radiation interacts with a scintillation cocktail mixed with the sample.

More about "Inositol Phosphates"

Inositol Phosphates (IP) are a diverse group of cellular signaling molecules that play crucial roles in a wide range of physiological processes.
These compounds, also known as inositol polyphosphates or IPPs, are derived from the cyclic sugar alcohol myo-inositol and are involved in a variety of cellular functions, including cell signaling, membrane trafficking, calcium homeostasis, and energy metabolism.
The inositol phosphate family includes a range of molecules, such as inositol monophosphates (IP1), inositol bisphosphates (IP2), inositol trisphosphates (IP3), inositol tetrakisphosphates (IP4), inositol pentakisphosphates (IP5), and inositol hexakisphosphates (IP6), also referred to as phytic acid or phytate.
These signaling molecules can be studied using various experimental techniques, such as [3H]myo-inositol and Myo-[2-3H]inositol labeling, as well as IP-One Tb HTRF kit, CarboPac PA200 column, IP-One HTRF kit, and GraphPad Prism 5 software for data analysis.
The AG1-X8 resin and Microcon Ultracel YM-30 can be used for the purification and separation of inositol phosphates.
Inositol phosphates are involved in a plethora of cellular processes, including signal transduction, vesicle trafficking, cytoskeleton organization, and chromatin remodeling.
They play crucial roles in processes such as insulin signaling, calcium homeostasis, and phosphoinositide metabolism.
Understanding the diverse functions of inositol phosphates is essential for unraveling the complex mechanisms underlying cellular physiology and pathology.
Explore the world of Inositol Phosphates with PubCompare.ai's cutting-edge platform, which provides a comprehensive exploration of these essential cellular signaling molecules.
Easily locate relevant protocols from literature, preprints, and patents, and leverage our innovative comparisons to identify the best approaches for your research.
Enhance reproducibility and accuracy in your studies with our AI-driven solution.