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Iodoacetic Acid

Iodoacetic Acid is a chemical compound with the formula CH2ICO2H.
It is a colorless, crystalline solid that is soluble in water and organic solvents.
Iodoacetic Acid is commonly used as a reagent in biochemistry and molecular biology, particularly in the study of protein structure and function.
It can be used to selectively modify sulfhydryl groups in proteins, allowing for the investigation of their role in protein folding and activity.
Iodoacetic Acid has also been employed in the analysis of amino acid sequences and the detection of free thiol groups.
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Most cited protocols related to «Iodoacetic Acid»

The first method is a widely accepted and sensitive enzyme recycling assay based on a procedure reported by Tietze (1 (link)) and modified by Adams et al (2 (link)) that requires no specialized equipment. GSH is oxidized by 5,5′-dithiobis-(2-nitrobenzoic acid) (DTNB) resulting in the formation of GSSG and 5-thio-2-nitrobenzoic acid (TNB). GSSG is then reduced to GSH by glutathione reductase (GR) using reducing equivalent provided by NADPH. The rate of TNB formation is proportional to the sum of GSH and GSSG present in the sample and is determined by measuring the formation of TNB at 412 nm. Specific changes have been described to increase assay sensitivity enabling measurements in plasma from populations with inherently low GSH or GSSG levels (3 (link), 4 (link)).
The second method uses HPLC separation and fluorometric detection. The original method, developed by Reed et al (5 (link)), used iodoacetic acid (IAA) to form S-carboxymethyl derivatives with free thiols and fluorodinitrobenzene which reacts with amines to facilitate UV absorbance detection at 365 nm. Martin and White (6 (link)) later altered this method using dansyl chloride as the derivatizing agent with fluorescence detection thereby increasing the sensitivity of the assay substantially. Finally, Jones et al (7 (link)) further refined the method to minimize artifactual oxidation and increase sensitivity. A technique using iodoactetic acid as the thiol akylating agent followed by dansyl chloride derivatization for fluorometric detection is presented. This method is advantageous because it is amenable to small sample quantities and detects thiols and disulfides of several small molecules, GSH, GSSG cystiene, cystine, and mixed disulfides in a single run using ion-paring chromatography. The alkylation and derivatization processes are rather time-consuming and iodoacetic acid (IAA) reacts rather slowly with free thiols (8 (link), 9 (link)). While relative comparisons can be made using this method, caution should be taken in making conclusions about absolute concentrations; specifically of the disulfide species.
Publication 2012
2-nitro-5-mercaptobenzoic acid Acids Alkylation Amines Biological Assay Chromatography Cystine dansyl chloride derivatives Dinitrofluorobenzene Disulfides Dithionitrobenzoic Acid Enzyme Assays Fluorescence Fluorometry Glutathione Disulfide Glutathione Reductase High-Performance Liquid Chromatographies Hypersensitivity Iodoacetic Acid NADP Nitrobenzoic Acids Plasma Population Group Sulfhydryl Compounds
Participants and procedures. Participants in the current study, the Folate and Oxidative Stress (FOX) Study, were recruited between February and July of 2008 in Araihazar, Bangladesh. Potential participants were identified on the basis of well water As (wAs) concentrations obtained from a well survey in the year 2000 (van Geen et al. 2002 (link)) in order to ensure a wide range of As exposures for the examination of dose-dependent relationships. A new water sample was collected at the time of enrollment for analysis of wAs concentration. Individuals were eligible to participate in FOX if they a) were between 30 and 65 years of age; b) were not pregnant; c) were not taking nutritional supplements; d) did not have known diabetes, cardiovascular or renal disease, chronic obstructive pulmonary disease, or cancer; and e) had been drinking water from their current well for at least 3 months. Trained recruiters identified eligible participants, explained the nature of the study, obtained informed consent, and scheduled a field clinic visit. Because GSH is unstable and therefore requires that blood samples be processed immediately, all visits were conducted in the laboratory at our field clinic in Araihazar. During the field clinic visit, a trained interviewer administered a detailed questionnaire to each participant, and a physician collected a venous blood sample. Urine samples were collected in 50-mL acid-washed polypropylene tubes and frozen at –20°C.
The primary aim of this study was to examine the dose–response relationship between As exposure and measures of oxidative stress. We aimed to recruit 75 participants each from five wAs concentration categories: < 10, 10–100, 101–200, 201–300, and > 300 µg/L. However, the final sample included more particpants with lower exposures because many households switched to lower-As wells after wells in the region were surveyed for As in 1999–2000 (Chen et al. 2007 (link)). Therefore, the final distribution among well wAs exposure categories was < 10 µg/L (n = 76), 10–100 µg/L (n = 104), 101–200 µg/L (n = 86), 201–300 µg/L (n = 67), and > 300 µg/L (n = 45).
Oral informed consent was obtained by our Bangladeshi field staff physicians, who read an approved assent form to the study participants. This study was approved by the Bangladesh Medical Research Council and the institutional review board of Columbia University Medical Center.
Sample collection and handling. After the initial processing of blood samples in the field clinic, the blood and plasma aliquots were immediately frozen at –80°C. Samples on dry ice were transported in batches to Dhaka, Bangladesh, by car and again stored at –80°C (blood and plasma) or –20°C (urine). Samples were then packed on dry ice in coolers and transported by air to Columbia University.
wAs. Field sample collection and laboratory analysis procedures have been previously described in detail (Cheng et al. 2004 (link); van Geen et al. 2005 (link)). Water samples were collected in 20-mL polyethylene scintillation vials. The samples were acidified to 1% with high-purity Optima HCl (Fisher Scientific, Pittsburg, PA, USA) at least 48 hr before analysis (van Geen et al. 2007 ). Water samples were analyzed by high-resolution inductively coupled plasma mass spectrometry (ICP-MS) after 1:10 dilution and addition of a germanium spike to correct fluctuations in instrument sensitivity. The detection limit of the method is typically < 0.2 μg/L (Cheng et al. 2004 (link)). A standard with an As concentration of 51 µg/L was run multiple times in each batch. The intraassay and interassay coefficients of variation (CVs) for this standard were 6.01% and 3.76%, respectively.
Total urinary As. All urine samples were analyzed for total urinary As (uAs) in the Columbia University Trace Metals Core Laboratory by graphite furnace atomic absorption spectrometry (Nixon et al. 1991 (link)) using the AAnalyst 600 graphite furnace system (PerkinElmer, Shelton, CT, USA). A method based on the Jaffe reaction was used to measure urinary creatinine concentrations (Slot 1965 (link)). Method and instrument precision was checked by running four different urine samples with known concentrations (to cover the whole linearity range of the standard curve) every day immediately after the instrument calibration with aqueous standards. A urine sample with an As concentration in the middle of the linearity range was run after every 10 study samples. The intraassay and interassay CVs based on this quality control sample were 3.9% and 5.6%, respectively. For duplicate study samples, the intraassay and interassay CVs were 3.8% and 5.1%, respectively.
Total blood As. We used a Perkin-Elmer Elan DRC II ICP-MS equipped with an AS 93+ autosampler to analyze whole blood samples for total blood As (bAs) concentration, as described previously (Hall et al. 2006 (link)). The intraassay and interassay CVs were 3.2% and 5.7%, respectively, for quality control samples. For study samples, the intraassay and interassay CVs were 2.1% and 4.9%, respectively.
Blood GSH and GSSG and plasma Cys and CySS. Whole blood GSH and GSSG and plasma Cys and CySS were assayed essentially as described by Jones et al. (1998) (link). Blood was collected with a butterfly needle and syringe and then immediately transferred into Eppendorf tubes. For whole blood measurements, the Eppendorf tubes contained 5% perchloric acid, 0.1 M boric acid, and γ-glutamyl glutamate as an internal standard. For plasma measurements, the tubes contained 0.53 g l-serine, 25 mg heparin, 50 mg bathophenanthrolene, 300 mg iodoacetic acid, and 10 mL borate buffer stock (12.4 g boric acid, 19 g sodium tetraborate decahydrate, and 500 mL distilled water). The samples for plasma measurements were centrifuged for 1 min, and 200 µL of supernatant was transferred into Eppendorf tubes containing an equal volume of 10% perchloric acid and 0.2 M boric acid. For derivatization, plasma samples were centrifuged at 13,000 rpm for 2 min, 300 µL of supernatant was transferred to a fresh tube, and the pH was adjusted to 9.0. After incubating for 20 min at room temperature, dansyl chloride was added, and samples were incubated at room temperature in the dark for 24 hr. The derivatized samples were then stored at –80°C until delivered to Columbia University for analysis. Free dansyl chloride was extracted from thawed samples with 500 µL chloroform, and then 20 µL of the sample was injected onto the HPLC. Separation was achieved using a Supelcosil LC-NH2 column (catalog no. 58338; Sigma Chemical Co., St. Louis, MO, USA). Initial solvent conditions were 60% A (80% methanol, 20% water), 40% B (acetate-buffered methanol, pH 4.6) run at 1 mL/min for 10 min. A linear gradient to 20% A, 80% B was run during the 10- to 50-min period. From 50 to 52 min, the conditions were returned to 60% A, 40% B. Metabolites were detected using a Waters 474 scanning fluorescence detector (Waters Corp., Milford, MA, USA), with 335 nm excitation and 515 nm emission. Within-assay CVs were all between 0.05 and 0.10, and interassay CVs were between 0.11 and 0.18.
Plasma folate. Plasma folate was analyzed by radio protein-binding assay (SimulTRAC-S; MP Biomedicals, Orangeburg, NY, USA). To determine folate concentrations, we used folic acid as pteroylglutamic acid for calibration, and its 125I-labeled analog as the tracer. The intraassay and interassay CVs were 0.06 and 0.14, respectively.
Calculation of the reduction potential. The reduction potential (Eh) of the thiol/disulfide GSH/GSSG and Cys/CySS redox pairs (blood GSH Eh and plasma Cys Eh, respectively) were calculated using the Nernst equation:
Eh = Eo + RT/nF ln(acceptor/(donor)2,
where Eo is the standard potential for the redox couple, R is the gas constant, T is the absolute temperature, n = 2 for the number of electrons transferred, and F is Faraday’s constant (Jones et al. 2002 (link)). For GSH and GSSG, the equation simplifies to
Eh (mV) = −264 + 30 log[(GSSG)/(GSH2)],
where (GSH) and (GSSG) are molar concentrations, and the Eo value assumes a physiologic pH of 7.4. A more positive Eh value indicates a more oxidized redox state.
Statistical methods. We calculated descriptive statistics for characteristics of the study sample, As exposure variables (wAs, uAs, and bAs), and outcome variables (blood GSH and GSSG, plasma Cys and CySS), both for the total sample and by sex. Bivariate associations were examined using scatter plots and Spearman’s correlation coefficients. To examine the bivariate associations between dichotomous covariates and As exposure variables or continuous outcome variables we used t-tests or the nonparametric Wilcoxon rank sum test.
We used linear regression models to further examine the associations between As exposure variables, as continuous variables, and the outcome variables, with and without adjustment for potential confounders. Age and sex were included in all covariate-adjusted regression models. Other covariates considered for inclusion in the regression models were variables reported to be associated with the exposures or outcomes based on previous publications and/or variables associated with the exposure and outcome variables in the present study population. These variables included television ownership (as a surrogate for socioeconomic status), cigarette smoking, body mass index (BMI), urinary creatinine, and plasma folate. We adjusted for GSH laboratory batch (as a categorical variable) in order to reduce extraneous variation in the outcome variables. We also calculated the change in R2 between models for each outcome that included covariates only and corresponding models that included both the covariates and As exposure.
To facilitate comparisons among the different measures of exposure (wAs, uAs, and bAs), we report the estimated change in the mean value of blood GSH, blood GSH Eh, plasma CySS, and plasma Cys Eh associated with an interquartile range (IQR) increase in each exposure. For outcome variables that were natural log-transformed (blood GSSG and plasma Cys) we report the ratio of estimated geometric means for an IQR change in As exposure.
To examine possible nonlinear relationships, we also created quintiles of As exposure variables and computed covariate-adjusted mean values of the outcome variables for categories of As exposure; plots of quintile-specific adjusted mean values were examined to determine if the association was approximately linear.
We ran separate linear regression models to examine the covariate-adjusted associations between As exposure and the outcome variables stratified by sex or by folate status. We then used a Wald test to detect differences in the covariate-adjusted associations between As exposure and outcome variables by sex or by folate status. All analyses were performed using SAS (version 9.2; SAS Institute Inc., Cary, NC, USA); all statistical tests were two-sided with a significance level of 0.05.
Publication 2013
Acetate Acids Biological Assay BLOOD Borates borax boric acid Butterflies Cardiovascular System Chloroform Chronic Obstructive Airway Disease Clinic Visits Creatinine cysteinylcysteine dansyl chloride Diabetes Mellitus Dietary Supplements Disulfides Dry Ice Electrons Ethics Committees, Research Fluorescence Folate Folic Acid Freezing Germanium Glutamate Glutathione Disulfide Graphite Heparin High-Performance Liquid Chromatographies Households Hypersensitivity Index, Body Mass Interviewers Iodoacetic Acid Kidney Diseases Malignant Neoplasms Mass Spectrometry Metals Methanol Molar Needles Oxidation-Reduction Oxidative Stress Perchloric Acid Physicians physiology Plasma Polyethylene Polypropylenes Serine Solvents Specimen Collection Spectrophotometry, Atomic Absorption Sulfhydryl Compounds Syringes Technique, Dilution Tissue Donors Urine Veins
All reagents were from Sigma Chemicals (St. Louis, MO) except AP5, bicuculline, gabazine, kynurenic acid, NBQX (all from Ascent scientific, UK), and iodoacetic acid (from Acros/Fisher). Primary antibodies were (host/supplier/dilution): nNOS (rabbit/Cayman chemicals 160870/1:200), GAD65 (mouse/Millipore MAB 351/1:200), GAD67 (mouse/Millipore MAP 5406/1:200), α6 subunit of GABAAR (rabbit/Millipore AB5610/1:200) δ subunit of GABAAR (rabbit/Millipore AB9752/1:200). Secondary antibodies were various excitation maxima Alexafluors (Invitrogen) from appropriate hosts diluted 1:500. For some antibodies (α6 and δ subunit of GABAAR), specificity has been confirmed by lack of labeling in relevant knockout mice, for others (GAD 65 and 67) specificity has been confirmed by their labeling of a single band on western blots (see manufacturer website for details, and links therein). For those antibodies where such confirmation of specificity was not already available (nNOS), we confirmed specificity ourselves, by examining slices from nNOS knockout mice (Nos1tm1Plh homozygotes, backcrossed to C57BL/6J mice for >10 generations, from Jackson Laboratory), which did not display detectable nNOS staining (Supplementary Fig. 4). Furthermore, for all of the antibodies we used, the general qualitative expression pattern within the cerebellum is similar to what has been shown with other antibodies in other reports and to our own studies with alternative antibodies. Importantly, for all of the crucial immunohistochemical studies (GABAAR subunits and nNOS), we have conducted parallel electrophysiological studies of the relevant proteins' activity which confirm our histochemical assessments (see electrophysiological experiments in Figs. 1&6 for functional confirmation of GABAAR subunit and NOS expression levels, respectively).
Publication 2013
2,3-dioxo-6-nitro-7-sulfamoylbenzo(f)quinoxaline Antibodies Bicuculline Caimans Cerebellum Electrophysiologic Study, Cardiac Figs gabazine glutamate decarboxylase 1 (brain, 67kDa), human glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) protein, human Homozygote Iodoacetic Acid Kynurenic Acid Mice, Inbred C57BL Mice, Knockout Mus NOS1 protein, human Proteins Protein Subunits Rabbits Technique, Dilution Western Blot
Proteins were extracted from the WT and Tri-Mut strains cultivated in normal THY medium at exponential growth phase in accordance with our previously reported method (Yang et al., 2015 (link)). Two hundred microgram proteins from each sample were dissolved in an equal volume of sample buffer, followed by disulfide reduction with 10 mM of dithiothreitol (56°C, 1 h) and alkylation with 55 mM of iodoacetamide (25°C, 40 min in dark). For each sample, 20 μg proteins were quantified by 10% SDS-PAGE, then 150 μg proteins were precipitated with 4 volume of ice-cold acetone at −20°C for 2 h and collected by centrifugation (2000 g, 5 min, 4°C). The pellet was resuspended in 40 μL dissolution buffer (0.5% TAB, 1 M urea), digested with trypsin (1:25 w/w at 0 h, 1:50 w/w at 3 h) (Promega, USA) at 37°C for 18 h and then lyophilized.
The iTRAQ labeling of the peptide samples were performed using an iTRAQ Reagent 4-plex kit (AB SCIEX, USA) according to the manufacturer's protocol. Two biological replicates for WT were labeled with 114-, 115-, and two biological replicates for Tri-Mut were labeled with 116-, 117-. After incubation for 2 h, the labeled peptides with respective isobaric tags were dried to ~20 μL with a vacuum centrifuge. The labeled WT and Tri-Mut replicate samples were 1:1 pooled (114 vs. 116, 115 vs. 117), and cleaned up using Strata-X 33u polymeric reversed phase column (10 mg/mL, Phenomenex, USA). Desalted peptides were resuspended with buffer A (5% acetonitrile, 0.1% formic acid) and detected using an ABSCIEX Triple-TOF 5600 mass spectrometer (AB SCIEX, USA) coupled with a Nanospray III source and a pulled quartz tip. The parameters were used in the mass spectrometer as described previously (Yin et al., 2013 (link)).
The data (.mgf) were acquired from raw data (.wiff) by AB SCIEX MS Data Converter V1.1 software, then identified and quantified via ProteinPilot™ Software 4.5. The quantitative analysis parameters were set as follow: Sample Type, iTRAQ 4 plex (Peptide Labeled); Cys. Alkylation, Iodoacetic acid; Digestion, Trypsin; Instrument, Triple-TOF 5600; ID Focus, Biological modifications; Database, S. pneumoniae D39_.fasta.fasta; Search Effort, Thorough; Detected Protein Threshold [Unused ProtScore (Conf)] > 1.30 (95.0%). The criteria of fold chang >1.20 or < 0.83 combined with p < 0.05 was used to define the differentially expressed protein (DEP) between WT and Tri-Mut in two biological replicates.
Publication 2016
Acetone acetonitrile Alkylation Biopharmaceuticals Buffers Centrifugation Cold Temperature Digestion Disulfides Dithiothreitol DNA Replication formic acid Iodoacetamide Iodoacetic Acid Peptides Polymers Promega Proteins Quartz SDS-PAGE Strains Streptococcus pneumoniae Trypsin Urea Vacuum
For amino acid analysis, liver tissue from 8 experimental groups (UKT2, URT2, NKT2, NRT2, UKT3, URT3, NKT3, NRT3) was included (n = 3 per group). In detail, 20 mg of each liver sample was homogenized in 60 µl lysis buffer containing 50 mM Tris (pH 7.8), 1 mM EDTA (GE Healthcare, Munich, Germany), 10 mM NaF (Fisher Scientific, Schwerte, Germany), 1% (v/v) Igepal CA-630 (Sigma-Aldrich, Taufkirchen, Germany), 0.1% (v/v) Triton X-100 (GE Healthcare, Munich, Germany), 0.5% (v/v) deoxycholic acid (DOC; Sigma-Aldrich), 0.1% (w/v) sodium dodecyl sulfate (SDS; USB Corporation, Cleveland, OH, USA) and Roche Phospho-Stop tablets (one tablet/10 ml buffer; Roche Diagnostics, Mannheim, Germany). Protein concentrations in solubilized homogenates were determined by Bradford assay (Sigma-Aldrich, Germany). Liver homogenates from three animals per group were diluted with water (1∶20) and free amino acids were analyzed by HPLC equipped with a fluorescence detector (Series 1200, Agilent Technologies, Germany). The HPLC analysis method was adapted from the technique described by Krömer et al. [30] (link). Briefly, amino acids were separated after automated pre-column derivatization with ortho-phthalaldehyde/3-mercaptopropionic acid and 9-fluorenylmethoxycarbonyl chloride after reaction with 3-mercaptopropionic acid as reducing agent and iodoacetic acid to block sulfhydryl groups. Analyses were carried out at a flow rate of 0.8 ml/min within 45 min on a 250×4 mm Hyperclone ODS (C18) 120 Å column protected by a 4×3 mm C18 pre-column (Phenomenex, Aschaffenburg, Germany) using a gradient with 40 mM phosphate buffer (pH 7.8) and acetonitrile/methanol/water (v∶v∶v: 45∶45∶10) ranging from 6–100%.
Publication 2013
1-(9-fluorenyl)methyl chloroformate acetonitrile Acids Amino Acids Animals Biological Assay Buffers Cardiac Arrest Deoxycholic Acid Diagnosis Edetic Acid Fluorescence High-Performance Liquid Chromatographies Igepal CA-630 Iodoacetic Acid Liver Liver Function Tests Methanol o-Phthalaldehyde Phosphates Proteins Reducing Agents Sulfate, Sodium Dodecyl Sulfhydryl Compounds Tablet Tissues Triton X-100 Tromethamine

Most recents protocols related to «Iodoacetic Acid»

We prepared 39.44 mM sodium sulfite (Fujifilm Wako Pure Chemical Corporation), as an oxygen scavenger, in PBS (oxygen concentration of 0%). We also prepared an oxygen-saturated PBS solution containing sodium sulfite solution (oxygen concentration of 21%, matching that of air) by leaving it for a day. The oxygen concentrations in the solutions were verified using a TX3 trace oxygen microoptode. We also prepared 10 µM antimycin (Enzo Life Sciences), oligomycin (Abcam), and FCCP (Cayman chemical) in PBS as inhibitors of the mitochondrial respiratory pathway. In addition, as glycolytic pathway inhibitors, we prepared 50 µM heptelidic acid (Abcam) and 1 mM iodoacetic acid (Fujifilm Wako Pure Chemical Corporation) in PBS. To investigate the effect of pH on sperm motility, 150 mM NaCl with pH 7.1 and 8.6 by adding NaOH and HCl, respectively were also prepared. To prevent change in pH, the NaCl solution was used within 5 min of pH adjustment for each experiment.
A 0.5-mm deep silicone rubber spacer was placed on a slide to keep space between the slide and coverslip. Sperm cells from the spermathecae of C. osakensis queens were exposed to 20 µL of test solution on the slide and covered with a coverslip, and sperm motility was observed and recorded under a differential interference contrast microscope (Olympus BX53) with a 3CCD digital camera (Olympus DP74).
Sperm motility levels were scored based on the frequency of motile sperm cells as follows: 0, no motile sperm cells; 1, some sperm cells exhibiting motility; 2, intermediate motility, between scores 1 and 3; 3, 80–90% motility; and 4, maximum sperm cells motility. Scoring was performed by a trained observer within 2 min of dissection. In the experiments using an oxygen scavenger and NaCl, the motility scores of all test samples (with one exceptional sample in the PBS control) were either score 0 (immotile) or 4 (motile) (Figs. 2 and 6c). In the experiments using glycolysis and respiration inhibitors, intermediate motility was observed (Fig. 3). To ensure consistent scoring of sperm motility when testing the inhibitors, we performed all observations within 11 days of the experiments.
Publication 2023
antimycin Caimans Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone Dissection Fingers Gas Scavengers Glycolysis heptelidic acid inhibitors Iodoacetic Acid Microscopy, Differential Interference Contrast Mitochondria Motility, Cell Oligomycins Oxygen Oxygen-21 Respiration Respiratory Rate Silicone Elastomers Sodium Chloride sodium sulfite Sperm Sperm Motility
After one week (day 0), the animals were allocated to 3 subgroups of 10 animals each. The mean weight of the rats was 210 g and did not differ significantly between the groups. The animals were anaesthetised with the use of a VMS MATRX inhalation anaesthesia machine in a chamber for anaesthesia of laboratory animals and Isoflurane AErrane (BAXTER, Lublin, Poland) at a concentration of 4%. General anaesthesia was maintained with 2% Isoflurane applied through a rodent face mask.
The animals of each of the three subgroups received monoiodoacetic acid (MIA—Sigma-Aldrich Co., St. Louis, MO, USA) at a concentration of 0.03 mg diluted in 50 μg of sterile saline. It was injected through the patellar ligament of the right knee joint with the use of a U-100 insulin needle. In turn, 50 μg of saline was administered through the patellar ligament in the left knee joint (control).
The rats in the first group were stimulated to exercise on a treadmill (RR—running rats). Three days after the MIA administration, a week-long training period began and the animals ran on a treadmill for 10 min/day at a speed of 10 m/min. After a week, the running time was prolonged to 30 min/day at a speed of 18 m/min. This training regimen was maintained for 3 weeks. The total training time was 28 days.
The animals in the second group were allowed to lead a natural lifestyle (no treadmill stimulation; WR—walking rats). In the third group, all parts of the right hind limb muscle were injected with Clostridium botulinum toxin type A (botox) supplied by Allergan (Irvine, CA, USA) at a dose of 0.8 units/kg b.w. to disable the movement of the right hind limb (Botox-injected rats, IR—immobilised rats). Experimental design is shown on Scheme 1.
The experiment was terminated on day 28 of the exercise imposed on the RR and WR rats and immobilisation of the IR rats. The animals were anaesthetised via intraperitoneal injection of 10 mg/kg b.w. xylazine (BIOWET, Puławy, Poland) and 80 mg/kg b.w. of ketamine (VET-AGRO, Lublin, Poland). Next, the animals were immobilised on the section table. After exposure of the heart, a 12-gauge needle was inserted into the right ventricle and blood was drained. In the next step, physiological saline was introduced gravitationally into the bloodstream to remove morphotic elements; next, 10% formalin was administered. After ca. 45–60 s, the needle was inserted into the right atrium to fill the vascular bed with formalin.
Publication 2023
Anabolism Anesthesia Anesthesia, Inhalation Animals Animals, Laboratory Atrium, Right BLOOD Blood Circulation Blood Vessel Botox Botulinum Toxin Type A Exhaling Face Formalin General Anesthesia Heart Hindlimb Immobilization Injections, Intraperitoneal Insulin Iodoacetic Acid Isoflurane Ketamine Knee Joint Ligamentum Patellae Menstruation Disturbances Movement Muscle Tissue Needles physiology Rattus norvegicus Rodent Saline Solution Sterility, Reproductive Treatment Protocols Ventricles, Right Xylazine
All viability assays were performed in 96-well black-walled, clear bottom plates. Growth media was removed following indicated treatments, and 100 µL of a room-temperature solution of Cell Titer-Glo and Opti-MEM was immediately added to each well (1:1 Cell Titer-Glo:Opti-MEM). Luminescence (Cell Titer-Glo) readings were taken after 10 min room-temperature incubation. Student’s t-test was used to determine the significance of specified gene knockdown values from non-targeting siRNA values. All cell number assays were CyQUANT measurements, and were performed in 96-well black-walled, clear bottom plates. Growth media was removed following indicated treatments and cells were processed according to the manufacturer’s protocol. Student’s t-test was used to determine the significance of specified gene knockdown values from non-targeting siRNA values. All ATP/cell assays were performed in 96-well black-walled, clear bottom plates. Growth media was removed following indicated treatments, and 100 µL of a room-temperature solution of Cell Titer-Glo, Opti-MEM, and CyQUANT was immediately added to each well (1:1:0.0058 Cell Titer-Glo:Opti-MEM:CyQUANT). Luminescence (Cell Titer-Glo) and fluorescence (CyQUANT) readings were consecutively taken after 10 min room-temperature incubation. Cell Titer-Glo values were divided by CyQUANT values to generate ATP/cell values. Inhibitors and drug treatments: Cells were treated with iodoacetic acid (IAA, 10 μM), oligomycin (500 ηM), or DMSO (vehicle, equivalent percent as drug) for four hours prior to ATP/cell measurements. Cells were treated with AZD8055 at the indicated concentrations for 18 h prior to cell viability measurements. Cells were treated with 6-aminonicotinamide (6-AN, 100 μM) or DMSO (equivalent percent as drug) for 24 h prior to cell number measurements.
Publication 2023
6-Aminonicotinamide AZD8055 Biological Assay Cells Cell Survival Culture Media Fluorescence Gene Knockdown Techniques inhibitors Iodoacetic Acid Luminescence Oligomycins Pharmaceutical Preparations RNA, Small Interfering Student Sulfoxide, Dimethyl
HeLa (cervical carcinoma), U251 (glioblastoma), SF295 (glioblastoma), SF539 (glioblastoma), and SNB-75 (glioblastoma) cells were maintained in media formulated from DMEM lacking glucose, glutamine, and pyruvate (Sigma-Aldrich, St. Louis, MO, USA), and supplemented with 10 mM glucose or 10 mM pyruvate as indicated. All media was supplemented with 10% fetal bovine serum (FBS). Cells were grown in normal tissue culture-treated flasks under standard growth conditions of 5% CO2. Iodoacetic acid, rotenone, oligomycin, and 6-aminonicotanimide were obtained from Sigma-Aldrich, and AZD8055 was obtained from Selleck Chemicals, Boston, MA. All small interfering RNAs (siRNAs) were from Qiagen and were transfected into cells with oligofectamine (Invitrogen). Genes targeted and Gene IDs are provided in Supplementary Table S1. Knockdown levels were determined using quantitative reverse transcription-PCR (qRT-PCR) as previously described [24 (link)].
Publication 2023
AZD8055 Cells Cervical Cancer Fetal Bovine Serum Genes Glioblastoma Glucose Glutamine HeLa Cells Iodoacetic Acid oligofectamine Oligomycins Pyruvate Reverse Transcription RNA, Small Interfering Rotenone Tissues
For each sample, a single stacking gel band containing all proteins was reduced with DTT, alkylated with iodoacetic acid and digested with trypsin. Extracted peptides were re-solubilized in 0.1% aqueous formic acid and loaded onto a Thermo Acclaim PepMap™ precolumn (ThermoFisher, 75 µM ID X 2 cm C18 3uM beads) and then onto an Acclaim™ PepMap™ EASY-Spray (ThermoFisher, 75 µM X 15 cm with 2 µM C18 beads) analytical column separation, using a Dionex Ultimate 3000 uHPLC at 250 nl/min with a gradient of 2–35% organic (0.1% formic acid in acetonitrile) over 2 h. Peptides were analyzed using a Thermo Orbitrap Fusion mass spectrometer operating at 120,000 resolution for MS1 with HCD sequencing at top speed (15,000 resolution) for all peptides with a charge of 2+ or greater. The raw data were converted to mgf format (Mascot generic format) for searching using the Mascot 2.5.1 search engine (Matrix Science) against human protein sequences (Uniprot 2020) or a protein FASTA database containing the wildtype and mutated forms of human MGP. The database search results were loaded onto Scaffold Q+ Scaffold_4.4.8 (Proteome Sciences) for statistical treatment and data visualization. Pinnacle (Optys Tech) was used to quantify all detected peptides using a MS1 quantification workflow (Targeted Quantification: Label Free DDA) wherein the peptide specific XICs from the raw mass spec data (.raw) were used to directly compare all identified peptide (*.dat) amounts across all experiments using precursor ion integrals (in counts). The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository (dataset identifier PXD043374). URL:https://www.ebi.ac.uk/pride/.
Publication 2023
acetonitrile Amino Acid Sequence formic acid Generic Drugs Homo sapiens Iodoacetic Acid Mass Spectrometry NR4A2 protein, human Peptides Proteins Proteome Trypsin

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Iodoacetic acid is a chemical compound used in various laboratory applications. It is a colorless crystalline solid that is soluble in water and organic solvents. Iodoacetic acid is commonly used as a reagent for the modification of thiol groups in proteins and other biomolecules.
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Trypsin is a serine protease enzyme that is commonly used in cell culture and molecular biology applications. It functions by cleaving peptide bonds at the carboxyl side of arginine and lysine residues, which facilitates the dissociation of adherent cells from cell culture surfaces and the digestion of proteins.
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Dithiothreitol (DTT) is a reducing agent commonly used in biochemical and molecular biology applications. It is a small, water-soluble compound that helps maintain reducing conditions and prevent oxidation of sulfhydryl groups in proteins and other biomolecules.
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Trypsin is a proteolytic enzyme used in laboratory settings. It is commonly employed for the digestion and dissociation of cells, as well as the preparation of cell suspensions for various applications.
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Sequencing grade modified trypsin is a protease enzyme used for the digestion of proteins prior to mass spectrometry analysis. It is designed to provide consistent, high-quality peptide digestion for protein identification and characterization.
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Trichloroacetic acid is a colorless, crystalline chemical compound used in various laboratory applications. It serves as a reagent and is commonly employed in analytical chemistry and biochemistry procedures. The compound's primary function is to precipitate proteins, making it a useful tool for sample preparation and analysis.
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Bovine serum albumin (BSA) is a common laboratory reagent derived from bovine blood plasma. It is a protein that serves as a stabilizer and blocking agent in various biochemical and immunological applications. BSA is widely used to maintain the activity and solubility of enzymes, proteins, and other biomolecules in experimental settings.
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Trypsin is a serine protease enzyme that is commonly used in cell biology and biochemistry laboratories. Its primary function is to facilitate the dissociation and disaggregation of adherent cells, allowing for the passive release of cells from a surface or substrate. Trypsin is widely utilized in various cell culture applications, such as subculturing and passaging of adherent cell lines.
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GSH is a high-performance laboratory equipment designed for a variety of applications in research and development. It serves as a versatile tool for general laboratory tasks.
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HPLC (High-Performance Liquid Chromatography) is a analytical technique used for the separation, identification, and quantification of various chemical compounds. It utilizes a liquid mobile phase to carry the sample through a stationary phase within a column, facilitating the separation of the components based on their interactions with the stationary and mobile phases.

More about "Iodoacetic Acid"

Iodoacetic acid (IAA) is a versatile chemical compound with the formula CH2ICO2H.
It is a colorless, crystalline solid that is soluble in water and organic solvents.
IAA is widely used as a reagent in biochemistry and molecular biology, particularly in the study of protein structure and function.
One of its key applications is the selective modification of sulfhydryl (thiol) groups in proteins, allowing researchers to investigate their role in protein folding and activity.
IAA can also be employed in the analysis of amino acid sequences and the detection of free thiol groups.
Researchers often use IAA in conjunction with other compounds like trypsin, dithiothreitol (DTT), and trichloroacetic acid (TCA) to analyze and purify proteins.
Trypsin is a serine protease enzyme that is commonly used to cleave proteins into smaller peptides, facilitating their analysis.
DTT is a reducing agent that helps maintain the reduced state of thiol groups, while TCA is used for protein precipitation and purification.
Bovine serum albumin (BSA) and glutathione (GSH) are also related compounds that may be used in conjunction with IAA in various biochemical assays and procedures.
When it comes to optimizing your IAA-related research, PubCompare.ai can be a valuable tool.
This AI-driven platform helps researchers locate the most accurate and reproducible protocols from literature, preprints, and patents, enabling seamless comparisons to identify the optimal products and procedures.
By leveraging the power of AI-driven optimization, you can enhance the effectiveness of your IAA-focused research and achieve more robust and reliable results.