IR genes were named according to a unified nomenclature system based upon a foundation of the cytologically derived D. melanogaster IR gene names [15] (link). Receptor names are preceded by a four-letter species abbreviation consisting of an uppercase initial letter of the genus name and three lower case initial letters of the species name (e.g. Anopheles gambiae = Agam; Daphnia pulex = Dpul). Orthologues of D. melanogaster sequences are given the same name (e.g. CquiIR25a, AcalIR25a). If multiple copies of an orthologue of a D. melanogaster gene exist for a species (based on sequence, not function), they are given the same name followed by a point and a number (e.g. ApisIR75d.1, ApisIR75d.2). If several in-paralogues exist both in D. melanogaster and other species, these are all given the same number (indicating their grouping within a common clade), but different final letterings. For novel, species-specific IRs, we defined new names numbering from 101 upwards to avoid confusion with D. melanogaster gene names, which number up to IR100a. For species-specific IRs that form monophyletic clades and had high (>60%) amino acid identity, we gave these the same name with an additional number suffix after a point (e.g. AaegIR75e.1, AaegIR75e.2). We did not rename genes with previously published names (e.g. C. elegans GLR-7 and GLR-8 [9] (link)).
For vertebrate iGluRs, we used the NC-IUPHAR nomenclature [81] (link): each species name is followed by “Glu”, a letter representing the subtype of the receptor (K for Kainate, A for AMPA and N for NMDA), and a number, reflecting predicted orthology with mammalian iGluRs. We did not name (or rename) invertebrate iGluRs in this study, except for newly predicted gene sequences (Table S3 ), where logical variants of NC-IUPHAR nomenclature were assigned.
For vertebrate iGluRs, we used the NC-IUPHAR nomenclature [81] (link): each species name is followed by “Glu”, a letter representing the subtype of the receptor (K for Kainate, A for AMPA and N for NMDA), and a number, reflecting predicted orthology with mammalian iGluRs. We did not name (or rename) invertebrate iGluRs in this study, except for newly predicted gene sequences (
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