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Octyl glucoside

Octyl glucoside is a nonionic surfactant commonly used in biochemical and biophysical applications.
It is effective at solubilizing membranes and membrane proteins, making it a valuable tool for studying protein structure and function.
Octyl glucoside has low toxicity and can be easily removed from samples, making it a preferred detergent for many researchers.
This page describes how PubCompare.ai's AI-powered protocol comparison can help optimize octyl glucoside experiments, identifying the mostu reproducible procedures from literature, preprints, and patents to enhance efficiency and reproducibility in your research.

Most cited protocols related to «Octyl glucoside»

Reagents—The αIIbβ3 antagonist lotrafiban was supplied by GlaxoSmithKline (King of Prussia, PA). The anti-Rac (23A8) monoclonal antibody was purchased from Upstate Biotechnology (TCS Biologicals, Bucks, UK). Anti-Rac2 polyclonal antibody and anti-Rac3 polyclonal antibody were generously provided from Gary Bokoch (Scripps Institute, La Jolla, CA) and Ivan de Curtis (San Rafaele Scientific Institute, Milan, Italy), respectively. The cDNA for the GST-CRIB domain of PAK1 prepared as described previously (21 (link)) and the active form of Rac (L61Rac) were the kind gifts from Dr. Doreen Cantrell (Imperial Cancer Research Fund, London, UK). D-Phenyl-alanyl-1-prolyl-1 arginine chloromethyl ketone was purchased from Calbiochem. Fibrinogen depleted of plasminogen, VWF, and fibronectin was from Kordia Laboratory Supplies, Leiden, Netherlands. VWF was a generous gift from Michael C. Berndt (Monash University, Clayton, Australia). All other reagents were from Sigma or previously named sources (22 (link), 23 (link)).
Preparation of Human Washed Platelets—Human venous blood was drawn by venipuncture from healthy volunteers into sodium citrate and acid/citrate/dextrose as described previously (23 (link)). Platelet-rich plasma (PRP) was prepared by centrifugation of whole blood at 200 × g for 20 min. The platelets were then isolated from PRP by centrifugation at 1000 × g for 10 min in the presence of prostacyclin (0.1 μg/ml). The pellet was resuspended in modified HEPES/Tyrodes buffer (in mM: 129 NaCl, 0.34 Na2HPO4, 2.9 KCl, 12 NaHCO3, 20 HEPES, 5 glucose, 1 MgCl2; pH 7.3) containing 0.1 μg/ml prostacyclin. The platelets were washed once via centrifugation (1000 × g for 10 min) and resuspended at the desired concentration with HEPES/Tyrode buffer.
Preparation of Murine Washed Platelets—The generation of mice bearing a conditional loxP-flanked allele of Rac1, Rac1flox, has been described previously (6 (link)). To induce expression of the Mx1-Cre trans-gene, the mice were given a 150-μl intraperitoneal injection of synthetic double-stranded RNA polyinosinic-polycytidylic acid (2 mg/ml) every other day for a total of three injections, and blood was taken at least 14 days after the last injection to ensure a complete turnover of platelets. The protein expression of Rac1 and Rac2 was verified for both control and Rac-deficient mice for each experiment (data not shown). The number of platelets in whole blood from Rac1-/-, Rac2-/-, or Rac1-/-Rac2-/- mice was no different from wild type (data not shown). Bleeding problems, such as the intraperitoneal hemorrhage seen in Syk- and SLP-76-deficient mice, were not observed for these mice.
Murine blood was drawn from CO2terminally anesthetized mice by cardiac puncture and taken into 100 μl of acid/citrate/dextrose. PRP was obtained by centrifugation at 200 χ g for 6 min. Washed platelets were prepared via centrifugation of PRP at 1000 × g in the presence of prostacyclin (0.1 μg/ml) for 6 min. The pellet was resuspended in modified HEPES/Tyrode buffer to the desired platelet level. All animals were maintained using housing and husbandry in accordance with local and national legal regulations.
In separate experiments, human or murine platelet suspensions were treated with 10 μM cytochalasin D, 0.1-10 μg/ml CRP, 1-10 μM ADP, 0.04-1 units/ml thrombin, 10 μM lotrafiban or 1 mM adenosine 3′,5′-diphosphate (A3P5P), and 1 μM AR-C67085 for 10-30 min before use in the assays. Unless otherwise stated, all experiments were performed in the presence of 2 units/ml apyrase and 10 μM indomethacin and in the absence of exogenously added Ca2+.
Measurement of Rac Activity—Rac activity was measured essentially as described in Pearce et al. (18 (link)) using the CRIB domain of PAK1 (amino acids 67-150), which binds the GTP-bound form of Rac. Following stimulation of platelet suspensions (3 × 108/ml), reactions were stopped with an equal volume of 2× lysis buffer (2% (v/v) Nonidet P-40, 2% (w/v) N-octyl glucoside, 300 mM NaCl, 20 mM Tris/HCl, 2 mM EGTA, 20 mM MgCl2, 1 mM phenylmethylsulfonyl fluoride, 10 μg/ml leupeptin, 10 μg/ml aprotinin, 1 μg/ml pepstatin A, pH 7.4, and 2 mM orthovana-date). Alternatively, platelets (3 × 108/ml) were incubated for 10-45 min in dishes coated with fibrinogen, collagen, laminin, or BSA2in the absence or presence of thrombin (1 units/ml) and apyrase (2 units/ml). Unbound platelets were removed by two washes with phosphate-buffered saline followed by aspiration, and adherent cells were solubilized with 1× lysis buffer. A sample of the suspension over BSA was taken and used as a control. Insoluble material was then removed by centrifugation (5 min, 13,000 rpm), and GST-PAK1, previously incubated with glutathione agarose beads, stored in glycerol at -80 °C, and washed with 1× lysis buffer, was added to the lysates and incubated for 1 h at 4 °C. Beads were then washed with 1× lysis buffer, and the bound protein was taken up into Laemmli buffer. The resulting samples were separated by 12% SDS-PAGE, transferred to polyvinylidene difluoride membranes, and immunoblotted with a Rac-specific antibody and horseradish peroxidase-conjugated secondary antibodies (Amersham Biosciences). Protein was detected using ECL (Amersham Biosciences).
Measurement of Filamentous Actin Content—Filamentous actin content of washed platelets was measured using a modification of the method of Machesky and Hall (24 (link)). Basal or activated platelets (2 × 108/ml) were fixed with an equal volume of 3.7% formaldehyde containing a saturating amount of FITC-phalloidin (20 mM KH2PO4, 10 mM Pipes, 5 mM EGTA, 2 mM MgCl2, 0.1% Triton X-100, 3.7% formalde-hyde, 2 μM FITC-phalloidin) and incubated for1hat room temperature on a nutator. The platelets were then pelleted for 2 min in a microcentrifuge, and pellets were washed in 0.1% saponin, 20 mM KH2PO4, 10 mM Pipes, 5 mM EGTA, 2 mM MgCl2. Pellets were then resuspended in methanol to extract the FITC-phalloidin and incubated for 1 h on a nutator at room temperature. FITC-phalloidin binding was measured for each sample with the fluorescence emission at 520 nm and excitation at 488 nm. Alternatively, F-actin levels were assessed via flow cytometry after fixation, permeabilization, and staining of platelets with FITCphalloidin as described previously (18 (link)). Filamentous actin content was expressed as a comparison with values obtained for untreated cells processed in parallel on the same day.
Platelet Aggregation and Shape Change—A quantity of 300 μl of PRP or washed platelets (2 × 108/ml) was used for aggregation. Stimulation of platelets was performed in a PAP-4 aggregometer (Bio/Data Corp., Horsham, PA) with continuous stirring at 1200 rpm at 37 °C for the times shown. Aggregation of platelets was monitored by measuring changes in light transmission.
Static Adhesion Assays—Coverslips were incubated with a suspension of fibrinogen (100 μg/ml), collagen (100 μg/ml), or laminin (50 μg/ml) overnight at 4 °C. Surfaces were then blocked with denatured BSA (5 mg/ml) for 1 h at room temperature followed by subsequent washing with phosphate-buffered saline before use in spreading assays. Quiescent platelets failed to bind to surfaces coated with denatured BSA (data not shown).
Platelet spreading (2 × 107/ml) was imaged in real time using Köhler illuminated Nomarski differential interference contrast optics with a Zeiss 63× oil immersion 1.40 NA plan-apochromat lens on a Zeiss Axiovert 200M microscope. Time-lapse events were captured by a Hamamatsu Orca 285 cooled digital camera (Cairn Research, Kent, UK) using Slidebook 4.0 (Intelligent Imaging Innovations, Inc., Denver, CO). To compute the length and thickness of filopodia and surface area of spreading platelets, images were manually outlined and quantitated by determining the number of pixels within each outline using a Java plugin for the Image J software package as described previously (23 (link)). Imaging a graticule under the same conditions allowed the conversion of pixels size to microns.
Flow Adhesion Studies—For flow adhesion studies using collagen, mouse blood was drawn into sodium heparin (10 IU/ml) and D-phenylalanyl-1-prolyl-1 arginine chloromethyl ketone (40 μM). Alternatively, mouse blood was drawn into sodium citrate (0.38% w/v) for immobilized VWF adhesion studies. Glass capillary tubes (Camlab, Cambridge, UK) were coated with 100 μg/ml type I collagen from equine tendon (Horm, Nycomed, Munich, Germany) or 100 μg/ml VWF, 100 units/ml thrombin for1hat room temperature. The capillaries were washed and blocked with phosphate-buffered saline containing 5 mg/ml BSA for 1 h at room temperature before being mounted on the stage of an inverted microscope (DM IRB; Leica, Milton Keynes, UK). Anticoagulated whole blood was perfused through the chamber for 4 min at a wall shear rate of 1000 s-1, followed by washing for 3 min at the same shear rate with modified Tyrodes buffer before being fixed with 3.7% paraformaldehyde for 30 min and imaged using DIC microscopy. In selected experiments, fixed samples were incubated overnight with the fluorescent dye DiOC6(2 μM; Molecular Probes Inc., Eugene, Oregon) before being imaged using confocal microscopy (DM IRE2; Leica, Milton Keynes, UK). In separate experiments, whole blood was fluorescently labeled with DiOC6(2 μM, 10 min at 37 °C), and the accumulation of DiOC6-labeled platelets was monitored in real time using fluorescence microscopy (CoolSnap ES, Photometrics, Huntington Beach, CA).
Image analysis was performed off-line using ImageJ. Platelet adhesion results are expressed as the percentage of surface area covered by platelets.
Laser-induced Vessel Wall Injury—All procedures were undertaken with approval from the United Kingdom Home Office in accordance with the Animals (Scientific Procedures) Act of 1986. Male mice were anesthetized with ketamine (100 mg/kg Vetalar; Amersham Biosciences and Upjohn Ltd., UK) and 2% xylazine (20 mg/kg; Millpledge Pharmaceuticals, UK). The cremaster, a transparent muscle surrounding the testicle, was exteriorized and continuously superfused with a bicarbonate-buffered saline (36 °C) aerated with 5% CO2, 95% N2. High speed intravital microscopy experiments were performed as described previously by Falati et al. (25 (link)). Arterioles with a diameter of 25-35 μm were selected for study, and endothelial injury was induced using a pulsed nitrogen dye laser (coumarin 440 nm) focused on the luminal surface. To label platelets fluorescently, 20 μl of Alexa Fluor 488 conjugated to goat anti-rat antibody (Molecular Probes, Eugene, OR) and 5 μl of rat anti-mouse CD41 antibody (Pharmingen) were added to 70 μl of saline and infused via the carotid cannula. Multiple thrombi in each cremaster preparation were generated upstream to previous injuries in the same or similar sized arterioles. The background fluorescence intensity, predominantly because of freely circulating platelets, was determined and subtracted from the fluorescence intensity of the developing thrombus. The resulting value was multiplied by the sum of all pixels above background to give a value for integrated intensity at each time point. This integrated intensity value was directly proportional to the size of the developing thrombus and when plotted against time provided a graph that illustrated the dynamic kinetics of platelet accumulation.
Analysis of Data—Experiments were carried out on at least three occasions, and images shown are representative data from one experiment. Where applicable, results are shown as mean ± S.E. Statistical significance of differences between the means was determined by analysis of variance. If the means were shown to be significantly different, multiple comparisons were performed by the Tukey test. Probability values of p < 0.01 were selected to be statistically significant.
Publication 2005
The SNARE proteins were essentially isolated as previously described (Mima et al., 2008 (link)). Vti1p and Nyv1p were gel-filtered into RB150/ß-OG (20 mM HEPES, pH 7.4, 150 mM NaCl, 10% glycerol [vol/vol], 1% [wt/vol] ß-octyl glucoside) after purification using Sephacryl S-200 HR (GE Healthcare Biosciences, Pittsburgh, PA). A complete detergent exchange was confirmed by determining the 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS) concentrations in elution fractions (Urbani and Warne, 2005 (link)); only fractions with no residual amounts of CHAPS were pooled and used in the reconstitution experiments. Ypt7p (Hickey et al., 2009 (link)), Sec17p (Schwartz and Merz, 2009 (link)), His6-Sec18p (Haas and Wickner, 1996 (link)), and HOPS (Hickey and Wickner, 2010 (link)) were isolated as previously described.
Publication 2011
3-((3-cholamidopropyl)dimethylammonium)-1-propanesulfonate Detergents Glycerin HEPES Humulus Mima octyl glucoside propylsulfonic acid RB150 SNAP Receptor Sodium Chloride
Recombinant t- and v-SNARE proteins were expressed and purified as we previously described.13 (link),16 (link) The synaptic exocytic t-SNARE complex was composed of untagged rat syntaxin-1 and mouse SNAP-25 with an N-terminal His6 tag. The GLUT4 exocytic t-SNARE complex was composed of untagged rat syntaxin-4 and mouse His6-tagged SNAP-23. Recombinant v-SNARE proteins had no extra residues left after the tags were removed. The v-SNARE mutants were generated by site-directed mutagenesis and purified similarly to WT proteins. SNAREs were stored in a buffer containing 25 mM HEPES (pH 7.4), 400 mM KCl, 1% n-octyl-β-d-glucoside (OG), 10% glycerol, and 0.5 mM Tris(2-carboxyethyl)phosphine (TCEP). Soluble factors were stored in the protein binding buffer (25 mM HEPES [pH 7.4], 150 mM KCl, 10% glycerol, and 0.5 mM TCEP).
Recombinant untagged Munc18–1 and Munc18c proteins were produced in E. coli and Sf9 insect cells, respectively, using procedures we previously established.8b (link),11a (link),15a (link),17 (link) To preserve their maximum activities, purified SM proteins were immediately frozen, stored at −70 °C, and used within one month of purification. Full-length (FL) rat synaptotagmin-1 was expressed and purified in the similar way as we described for VAMP2. Human complexin-1 was expressed and purified using the protocol of Munc18–1 preparation.
Publication 2015
Buffers Escherichia coli Freezing Glycerin HEPES Homo sapiens Insecta Munc18-3 Protein Mus Mutagenesis, Site-Directed octyl glucoside phosphine Proteins Sf9 Cells SLC2A4 protein, human SNAP25 protein, human SNAP Receptor Syntaxin 1 Syntaxin 4 SYT1 protein, human tris(2-carboxyethyl)phosphine Tromethamine Vesicle-Associated Membrane Protein 2 Vesicle SNARE Proteins
Initial screening of sera was performed using retinal proteins that were extracted from a human retina, with 1% octyl glucoside in phosphate/saline buffer (PBS), pH 7.2. The proteins were separated by SDS-gel electrophoresis on a 10% gel and transferred to an Immobilon membrane (Millipore, Bedford, Massachusetts). Individual strips containing retinal proteins were blocked with 10% normal goat serum, 1% bovine serum albumin in PBS for 1 hr, and then probed with 1:100 diluted serum (1 hr) followed by a 1-hr incubation with anti-human IgG (H and L chain) conjugated to alkaline phosphatase (Sigma, St. Louis, MO). Color reaction was developed by adding the phosphatase substrate until dark bands, appeared in comparison to the positive control. Blots were run and examined in a masked fashion. As a positive control, we used a reference human serum containing anti-recoverin antibodies diluted 1:100. As a negative control, we omitted serum and applied only a secondary antibody.
Publication 2004
Alkaline Phosphatase Anti-Antibodies anti-IgG Bos taurus Buffers Cancer-Associated Retinopathy Antigen Electrophoresis Goat Homo sapiens Immobilon Immunoglobulins octyl glucoside Phosphates Phosphoric Monoester Hydrolases Proteins Retina Saline Solution Serum Serum Albumin Tissue, Membrane
Proteoliposomes were prepared (Zick et al., 2014 (link)) from mixed micellar solutions (containing 50 mM β-octyl-glucoside) by detergent dialysis (20-kDa cutoff membrane) in RB150/Mg2+ (20 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid⋅NaOH, pH 7.4, 150 mM NaCl, 1 mM MgCl2, 10% glycerol [vol/vol]) with individual SNAREs and prenylated Ypt7 at various molar protein:lipid ratios. Lipids dissolved in chloroform were mixed in vials containing β-octyl-glucoside at the following proportions. For vacuolar mixed lipids (16:0 18:1), 44.8–47.6 mol% 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 18 mol% 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine, 18 mol% soy l-α-phosphatidylinositol (PI), 4.4 mol% 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-l-serine, 2 mol% 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphate, 1 mol% 16:0 1,2-dipalmitoyl-sn-glycerol, 8 mol% ergosterol, and 1 mol% PI(3)P. For VML (18:2) compositions, as for RPLs used in Figures 3–7, lipids were mixed in the same proportions as described but with the dilinoleoyl forms of PC, phosphatidylethanolamine (PE), phosphatidylserine (PS), and phosphatidic acid (PA). All proteoliposomes throughout this study contained 0.2 mol% Marina-Blue-PE or 3 mol% NBD-PE.
Publication 2016
Acids Chloroform Detergents Dialysis Ergosterol Glycerin Glycerylphosphorylcholine Lipids Magnesium Chloride Micelles Molar octyl glucoside oleoyl-sn-glycero-3-phosphate Phosphatidic Acid phosphatidylethanolamine Phosphatidylethanolamines Phosphatidylinositols Phosphatidylserines Proteins proteoliposomes RB150 Serine SNAP Receptor Sodium Chloride Tissue, Membrane Vacuole

Most recents protocols related to «Octyl glucoside»

We tried to solve the structure of the Pol II–TCR–ELOF1–CNRL4CSA–E2–Ub complex; however, we could only see the E2–Ub conjugate bound to the E3 ligase if we did not crosslink the sample and if we included a small amount of n-octyl glucoside before sample freezing. Thus, we prepared the Pol II–TCR–ELOF1–CNRL4CSA–E2–Ub complex in the same way as the Pol II–TCR–ELOF1– CNRL4CSA complex but with the addition of 10× excess of E2–Ub conjugate over Pol II and without sample crosslinking. After the dialysis step, we also supplemented the protein solution with 0.004% n-octyl glucoside. Under these conditions, the Pol II–TCR complex was falling apart during cryo-EM grid preparation, and Pol II exhibited very strong preferred orientation distribution. However, we could solve the structure of the CNRL4CSA–E2–Ub subcomplex from dissociated or not-bound ligase particles.
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Publication 2024
Membranes were diluted with buffer A and mixed with different detergents to a final protein concentration of 2 mg mL−1 and a detergent concentration of 10 × critical micelle concentration (CMC) [5.3% n-Octyl-β-D-glucoside (OG), 2% n-nonyl-β-D-glucoside (NG), 0.47% n-dodecylphosphocholine (Fos-choline-12, FC-12), and 0.087% n-dodecyl-β-D-maltopyranoside (DDM) (Anatrace, Maumee, Ohio, USA)]. The non-solubilized and solubilized proteins were separated (150,000× g, 30 min, 4 °C) and checked through Coomassie and Western-Blot.
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Publication 2024
By using surface plasmon resonance (SPR) techniques, which are shown to be useful for membrane-bound peptides and drugs, we successfully evaluated interaction between various sterolysins and sterol surfaces. Toxin binding interactions with various lipids were investigated using Biacore T200 and Series S Sensor Chip HPA. The HPA chip surface is composed of alkanethiol (C11) to facilitate adsorption of a lipid monolayer. The HPA chip was prepared according to the instructions for use. The running buffer used was HBS (10 mM HEPES, 150 mM NaCl, pH 7.4). The HPA chip was first pre-conditioned by injection of 40 mM octyl D-glucoside for 5 minutes at 10 μL/minute. Cholesterol, Dinosterol, and epi-Cholesterol were each captured to approximately 1000 RU onto flow cells 2, 3, and 4 respectively using a 30 minute injection at 2 μL/minute. Flow cell 1 containing octyl D-glucoside served as a negative control and reference. Each of the lipid surfaces were washed using a 30 second injection of 10 mM NaOH to stabilize the baseline, and then blocked using 5 minute injection of 0.1 mg/mL BSA. Toxin binding specificity was measured using 1–10 μM KmTx 2 injected over all four flow cells at 10 μL/minute. Reference subtracted sensorgrams are shown. Detection of sterolysin affinity was carried out in HEPES buffer (pH 7.4) as running and injection media. Sterolysin dissolved in HEPES buffer was then passed on the sensor chip treated with sterols. The SPR response increased immediately after injection due to interaction between sterolysin in the sample solution and sterols immobilized on the surface of the sensor chip. To evaluate sterolysin binding to sterol-containing or sterol-free surface, the SPR response in the control lane was subtracted from that in the sterol-captured lane. Sterolysins firmly interacted with the sensor-chip surface and the sterolysins could be washed off. Toxin binding interactions with various lipids were investigated using Biacore T200 and Series S Sensor Chip HPA. The HPA chip surface is composed of alkanethiol to facilitate adsorption of a lipid monolayer. The HPA chip was prepared according to the instructions for use. The running buffer used was HBS (10 mM HEPES, 150 mM NaCl, pH 7.4). The HPA chip was first pre-conditioned by injection of 40 mM octyl D-glucoside for 5 minutes at 10 μL/minute. Cholesterol, Dinosterol, and epi-Cholesterol were each captured to approximately 1000 RU onto flow cells 2, 3, and 4 respectively using a 30-minute injection at 2 μL/minute. Flow cell 1 containing octyl D-glucoside served as a negative control and reference. Each of the lipid surfaces were washed using a 30 second injection of 10 mM NaOH to stabilize the baseline, and then blocked using 5-minute injection of 0.1 mg/mL BSA. Toxin binding specificity, as well as approximate kinetics and affinity were measured using a single concentration of 1.5 μM toxin injected over all four flow cells at 10 μL/minute. Reference subtracted and blank subtracted binding responses were fitted using a 1:1 model, with responses in blue and fitted curves in black.
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Publication Preprint 2024
WT Pol γ (2 μM) was mixed with 2 μM DNA and incubated on ice in a buffer containing 20 mM Hepes (pH 7.5), 140 mM KCl, 1 mM EDTA (pH 8.0), 10 mM CaCl2, 10 mM BME, and 0.01% (w/v) octyl-β-glucoside. A frozen grid was prepared by applying 4 μl of the sample on a plasma-cleaned QUANTIFOIL R 2/1 Cu 200 grid (Electron Microscopy Sciences) using Vitrobot Mark IV at 22°C and 100% humidity (Thermo Fisher Scientific).
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Publication 2024
The (co-)reconstitution
protocols for bo3 oxidase and F1FO-ATPase into hybrids were slight modifications of our
previous protocols.16 (link) Briefly, for the
reconstitution of bo3 oxidase, octyl glucoside
at the solubilization point (Rsol) was
added to hybrids (5 mg mL–1 LUVs, final conc. of
octyl glucoside 0.11%) for the reconstitution of F1FO-ATPase, sodium deoxycholate at Rsol was added to hybrids (5 mg mL–1 LUVs, final conc.
of sodium deoxycholate 0.065%), and for the co-reconstitution of bo3 oxidase and F1FO-ATPase
octyl glucoside was added to hybrids (5 mg mL–1 LUVs,
final conc. of octyl glucoside 0.05%). Next, for individual protein
reconstitution, bo3 oxidase was gently
added to hybrids at a final conc. of 0.72, 1.35, or 2.38 μM.
Meanwhile, the final conc. of F1FO-ATPase was
0.68, 0.72, or 2.38 μM. For co-reconstitution, the final conc.
of bo3 oxidase in the reconstitution mixture
was 0.72, 0.90, or 2.38 μM and the final conc. of F1FO-ATPase was 0.45, 0.72, or 2.38 μM. The reconstitution
mixture was incubated at 4 °C for 30 min with mild agitation,
followed by detergent removal via Bio-Beads SN-2 (Bio-Rad). For the
preparation of 200 μL of proteohybrids, the beads were added
in 3 subsequent additions, 30 mg of beads each, followed by 30-min
incubation at 4 °C and 600 rpm in a thermo shaker. After that,
beads were pelleted and the supernatant was collected and stored at
4 °C. If the proteoLUVs were not used for the preparation of
proteoGUVs the same day (which was always the case when protein insertion
and distribution were analyzed), the vesicle suspension was frozen
in liquid N2 and aliquots of 20 μL were stored at
−80 °C. For measurements of activity of proteins reconstituted
in GUVs, proteoLUVs were always used the same day because (1) a large
sample volume was required for measurements in a luminometer, and
(2) to avoid an increase in activity due to freezing and thawing the
samples (see Figure S3).
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Publication 2024

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Protease inhibitor cocktail is a laboratory reagent used to inhibit the activity of proteases, which are enzymes that break down proteins. It is commonly used in protein extraction and purification procedures to prevent protein degradation.
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N-octyl-β-D-glucoside is a non-ionic detergent commonly used in the solubilization and purification of membrane proteins. It is a naturally-derived sugar-based detergent with a critical micelle concentration (CMC) of approximately 20-25 mM in water at 25°C.
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Octyl-β-D-glucoside is a non-ionic detergent used in biochemical applications. It is a glucoside derivative with an octyl alkyl chain. Octyl-β-D-glucoside is commonly used for solubilizing and stabilizing membrane proteins in their native conformation.
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More about "Octyl glucoside"

Octyl glucoside, also known as n-octyl-beta-D-glucoside or octyl-beta-D-glucoside, is a nonionic surfactant commonly used in biochemical and biophysical applications.
This versatile detergent is effective at solubilizing membranes and membrane proteins, making it a valuable tool for studying protein structure and function.
Octyl glucoside has several key properties that make it a preferred choice for many researchers.
It has low toxicity and can be easily removed from samples, reducing the risk of interference with downstream experiments.
The Vitrobot Mark IV, a popular tool for cryo-electron microscopy, often utilizes octyl glucoside in its sample preparation protocols.
In addition to its use in protein studies, octyl glucoside is also employed in the formulation of protease inhibitor cocktails, which help preserve the integrity of proteins during extraction and purification.
Bio-Beads SM-2, another common lab product, can be used to remove octyl glucoside from samples, further enhancing the versatility of this surfactant.
Researchers often compare the performance of octyl glucoside to other nonionic detergents, such as Triton X-100 and Lipofectamine 2000, to determine the most effective solution for their specific applications.
The use of octyl glucoside extends beyond just protein research, as it is also employed in cell culture media, where it can help maintain the viability and growth of cells, such as those cultured in FBS (Fetal Bovine Serum).
PubCompare.ai's AI-powered protocol comparison can be a valuable tool for optimizing octyl glucoside experiments.
By identifying the most reproducible procedures from literature, preprints, and patents, researchers can enhance the efficiency and reproducibility of their octyl glucoside-based studies, leading to more reliable and impactful findings.