We screen a large scale chemical compound dataset (about 10 million compounds) targeting 8 representative protein targets taken from the DUD.E diverse data set in order to examine the efficiency and effectiveness of the DFCNN method. For each target, the corresponding dataset contains some active compounds (between 40 and 536) in the DUD.E dataset and 10,402, 895 drug-like compounds from ZINC database. The effectiveness is measured by the prediction-random ratio (Ratio0.9), defined as TPR0.9/Random0.9, where TPR0.9 indicates the ratio (N0.9/Active_num) between the number of active compounds with a DFCNN score larger than 0.9 (N0.9) and the active number of compounds (Active_num). The total number of the compounds (Total_num) with score above 0.9 is defined as NN. The random selection rate (Random0.9) is defined as NN/Total_num. Using cutoff score of 0.9, the prediction-random ratio measures the ratio of predicted TPR and random selection TPR.
Pralatrexate
It functions by inhibiting dihydrofolate reductase, thereby disrupting DNA synthesis and cellular proliferation.
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Most cited protocols related to «Pralatrexate»
We screen a large scale chemical compound dataset (about 10 million compounds) targeting 8 representative protein targets taken from the DUD.E diverse data set in order to examine the efficiency and effectiveness of the DFCNN method. For each target, the corresponding dataset contains some active compounds (between 40 and 536) in the DUD.E dataset and 10,402, 895 drug-like compounds from ZINC database. The effectiveness is measured by the prediction-random ratio (Ratio0.9), defined as TPR0.9/Random0.9, where TPR0.9 indicates the ratio (N0.9/Active_num) between the number of active compounds with a DFCNN score larger than 0.9 (N0.9) and the active number of compounds (Active_num). The total number of the compounds (Total_num) with score above 0.9 is defined as NN. The random selection rate (Random0.9) is defined as NN/Total_num. Using cutoff score of 0.9, the prediction-random ratio measures the ratio of predicted TPR and random selection TPR.
We also refined a pocket molecular dynamics simulation (pocket MD,
The pocket MD is same as the classical MD simulation, except that we only using the pocket region to reduce system size for simulation (
We performed the energy minimization steps with a step-size of 0.001ns, 100 ps simulation with isothermal-isovolumetric ensemble (NVT), and 10ns simulation with isothermal-isobaric ensemble (NPT) for water equilibrium. After that, a 100ns NPT production run (step size 2 fs) was carried out. The Parrinello-Rahman barostat and the modified Berendsen thermostat were used for simulation with a fixed temperature of 308 K and a pressure of 1 atm. RMSD and hydrogen bond number of the trajectory were calculated using Gromacs tools.
The simulation was continued using the metadynamics approach for exploring the free energy landscape. The interface coordination number of atoms of protein ligand complex was used as collective variable (CV). The protein-ligand interface coordination numbers correlate with the numbers of atom contact, and larger coordination number usually indicates that protein-ligand is in binding state.
The coordination number C is defined as follows by Plumed:
and
In the simulation, n was 6, m was 12, d0 was 0 nm and r0 was 0.5 nm. d0 is a parameter of the switching function. rij is the distance between atom i and atom j. The degrees of contacts between two groups of atoms can be estimated by above function(1) [44 (link)]. Metadynamics simulation for each protein-ligand system was performed for 100 ns (except protein-Azithromycin, which was extended to 300ns in order to reach the 0 Coordination Number and achieve convergences). During the metadynamics simulation, Gaussian values were deposited every 1 ps with a height of 0.3 kJ/mol. The widths of the Gaussians were 5 for the coordination number. The free energy landscapes of the metadynamics simulations along the CV were generated by the Plumed program and plotted using Gnuplot [45 ].
A total of 386 patients (including 69, 44, 110, and 163 patients collected from MSKCC, UNMC, GELA, and SMC databases, respectively) were identified from these four databases based on the following specific selection criteria: 1) histologies consistent with the inclusion criteria of PROPEL; 2) patients who received at least two lines of prior therapy (ie, the second line of therapy would match with patients receiving pralatrexate on PROPEL, which required one line of prior therapy); and 3) patients who had not received pralatrexate. The efficacy data were not part of the criteria to select patients for inclusion in the historical database.
The von Hoff analysis (10 (link),15 (link),16 (link)), compares the PFS on the study treatment to the PFS on the line of therapy before. The analysis is predicated on the idea that successive lines of therapy almost never produce a benefit greater than the lines of treatment before. Thus, the statistics of the analysis are defined as PFS on the experimental drug / PFS for the line of therapy just before, with a ratio greater than 1.3 being considered statistically significant, where the hypothesis would miss up to 15% for PFS ratio more than 1.3. The Von Hoff analysis was performed on the subset of patients with refractory disease (n = 68) that responded to pralatrexate treatment (n = 16).
Most recents protocols related to «Pralatrexate»
Example 1
Production of Alpha Hexaglutamated Pemetrexed (αHgPMX) Liposomes
Briefly L alpha hexaglutamated pemetrexed (aGR6) and D alpha hexaglutamated pemetrexed (aDGR6) were encapsulated in liposomes by the following procedure. First, the lipid components of the liposome membrane were weighed out and combined as a concentrated solution in ethanol at a temperature of around 65° C. In this example, the lipids used were hydrogenated soy phosphatidylcholine, cholesterol, and DSPE-PEG-2000 (1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy (polyethylene glycol)-2000]). The molar ratio of HSPC:Cholesterol:PEG-DSPE was approximately 3:2:0.15. Next, the aGR6 or aDGR6 was dissolved in 5% dextrose at a concentration of 150 mg/ml with a pH of 6.5-6.9. The drug solution was heated up to 65° C. The ethanolic lipid solution was injected into the aGR6 or aDGR6 solution using a small-bore needle. During this step the drug solution was well stirred using a magnetic stirrer. The mixing was performed at an elevated temperature (63° C.-72° C.) to ensure that the lipids were in the liquid crystalline state (as opposed to the gel state that they attain at temperatures below the lipid transition temperature Tm=51° C.−54° C.). As a result, the lipids were hydrated and form multiple bilayer (multilamellar) vesicles (MLV) containing aGR6 or aDGR6 in the aqueous core.
Downsizing of MLV's Using Filter Extrusion
The MLVs were fragmented into unilamellar (single bilayer) vesicles of the desired size by high-pressure extrusion using three passes through stacked (track-etched polycarbonate) membranes. The first pass was performed through stacked membranes consisting of two layers with a pore size of 200 nm. The remaining two passes were through the stacked membranes consisting of three layers with a pore size of 100 nm. During extrusion, the temperature was maintained above the Tm to ensure plasticity of the lipid membranes. As a result of the extrusion, large and heterogeneous in size and lamellarity MLVs turned into small, homogenous (90-125 nm) unilamellar vesicles (ULV) that sequestered the drug in their interior. A Malvern Zetasizer Nano ZS instrument (Southborough, Mass.) with back scattering detector(90°) was used for measuring the hydrodynamic size (diameter) at 25° C. in a quartz micro cuvette. The samples were diluted 50-fold in formulation matrix before analysis.
Purification of Liposomes
After the ULV's containing aGR6 or aDGR6 had been produced, the extra-liposomal free drug was removed using columns for small volume or tangential flow diafiltration against a suitable buffer for large volume. Although any buffer solution can be used, in this example the buffer used was 5 mM HEPES, 145 mM Sodium Chloride, pH 6.7. Upon completion of purification, filter sterilization was performed using a 0.22 micron filter.
Production of Alpha Hexaglutamated Pemetrexed (αHgPTX) Liposomes
Briefly L alpha hexaglutamated pemetrexed (aG6) and D alpha hexaglutamated pemetrexed (aDG6) were encapsulated in liposomes by the following procedure. First, the lipid components of the liposome membrane were weighed out and combined as a concentrated solution in ethanol at a temperature of around 65° C. In this example, the lipids used were hydrogenated soy phosphatidylcholine, cholesterol, and DSPE-PEG-2000 (1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy (poly-ethylene glycol)-2000]). The molar ratio of HSPC:Cholesterol:PEG-DSPE was approximately 3:2:0.15. Next, the aG6 or aDG6 was dissolved in 5% dextrose at a concentration of 150 mg/ml with a pH of 6.5-6.9. The drug solution was heated up to 65° C. The ethanolic lipid solution was injected into the aG6 or aDG6 solution using a small-bore needle. During this step the drug solution was well stirred using a magnetic stirrer. The mixing was performed at an elevated temperature (63° C.-72° C.) to ensure that the lipids were in the liquid crystalline state (as opposed to the gel state that they attain at temperatures below the lipid transition temperature Tm=51° C.-54° C.). As a result, the lipids were hydrated and form multiple bilayer (multilamellar) vesicles (MLV) containing aG6 or aDG6 in the aqueous core.
Downsizing of MLV's Using Filter Extrusion
The MLVs were fragmented into unilamellar (single bilayer) vesicles of the desired size by high-pressure extrusion using three passes through stacked (track-etched polycarbonate) membranes. The first pass was performed through stacked membranes consisting of two layers with a pore size of 200 nm. The remaining two passes were through the stacked membranes consisting of three layers with a pore size of 100 nm. During extrusion, the temperature was maintained above the Tm to ensure plasticity of the lipid membranes. As a result of the extrusion, large and heterogeneous in size and lamellarity MLVs turned into small, homogenous (90-125 nm) unilamellar vesicles (ULV) that sequestered the drug in their interior. A Malvern Zetasizer Nano ZS instrument (Southborough, Mass.) with back scattering detector(90°) was used for measuring the hydrodynamic size (diameter) at 25° C. in a quartz micro cuvette. The samples were diluted 50-fold in formulation matrix before analysis.
Purification of Liposomes
After the ULV's containing aG6 or aDG6 had been produced, the extra-liposomal gG6 was removed using columns for small volume or tangential flow diafiltration against a suitable buffer for large volume. Although any buffer solution can be used, in this example the buffer used was 5 mM HEPES, 145 mM Sodium Chloride, pH 6.7. Upon completion of purification, filter sterilization was performed using a 0.22 micron filter. The typical characteristics of liposomal derivatives are shown in the table below.
A dose response study was performed using liposomes containing hexaglutamated pemetrexed that were prepared essential as described above.
Cell viability was determined by CellTiter-Glo® (CTG) luminescent cell viability assay on Day 3 (48 hour) and Day 4 (72 hour). This assay determines the number of viable cells in culture based on quantifying ATP that is present within, which in turn signals the presence of metabolically active cells. The CTG assay uses luciferase as a readout. To assess cell viability Dose response inhibition of pemetrexed, HGP and liposomes on different cancer cell growth were investigated using CellTiter-Glo® luminescent cell viability assay. Human cancer cells were harvested, counted and plated at a same cell density on Day 0. A series of 8 dilutions of each test article were added to the cells on Day 1. Dose response curve were generated and fit using GraphPad Prism and IC50 of each test article were calculated. A lower the IC50 is, the more potent the test article is in term of cancer cell growth inhibition.
Cells were seeded into 96-well plate at a cell density of 5×104 cells per well in 100 μl of fresh media on Day 0. Eight serial 2-fold dilutions of each test article in culture medium were generated and added to cells in triplicate on Day 1. In addition, three wells of cells were treated with vehicle (HBS for free drug or empty liposome for liposomal HGP) alone as a control.
On Days 3 and 4, 100 μl of CellTiterGlo® Reagent were added to each well and incubated at room temperature for 15 minutes. Luciferase luminescence were recorded for each well. In addition, 8 serial 2-fold dilutions of the vehicle (HBS or empty liposome) in culture medium were added into empty wells and included in the assay to generate the background luminescence signals. Luciferase signals were normalized by subtracting the background luminescence signal out of the read-outs respectively.
Human Normal Primary Bone Marrow CD34+ Cells were obtained from ATCC. (ATCC Catalog Number PCS-800-012). Cells were thawed at 37° C. for 1 minute and then placed on ice. The cells were then resuspended in StemSpan SFEM (Stem Cell Tech Catalog Number 9650) plus 10% heat inactivated fetal bovine serum (Corning 35-015-CV). The cells were plated into 96 well culture plates at a density of 2.5×104 cells/well. The following day, live cells were collected via centrifugation and resuspended in neutrophil growth media (StemSpan SFEM plus 10% Heat Inactivated fetal bovine serum plus 100 ng/ml human stem cell factor (Sigma Catalog Number H8416), 20 ng/ml human granulocyte colony-stimulation factor (Sigma Catalog Number H5541), and 10 ng/ml human recombinant IL3 (Sigma SRP3090) at a density of 2.5×104 cells/well. Cells were incubated at 37° C. for 10 days. Fresh media was added every two days. Mature neutrophils were then collected and plated in 96 well plates at a density of 1×104 cells/well and incubated at 37° C. overnight. The next day, test article or vehicle was resuspended in neutrophil growth media and added to the plates. The cells were then incubated for either 48 hours or 72 hours at 37° C. and then assayed at each time point using the Cell Titer Glo Assay (Promega Catalog #G7572).
Methodologies used for cell line AML12 (non-cancerous liver cells) and CCD841 (non-cancerous colon epithelial cells) are similar to the methods used for cancer cells.
Results
In a set of dose response experiments, 6 cell lines representing different types of cancers, namely HT-29 (colon cancer), H2342 (NSCLC, adenocarcinoma subtype), H292 (NSCLC, adenocarcinoma subtype), SW620 (CRC), H1806 (triple negative breast cancer) and OAW28 (ovarian cancer), were studied (
The relative potency of the above mentioned derivatives as compared to pemetrexed, following exposure over 48 hours, is represented in
As stated in some instances increased uptake of payload can be achieved by targeting the liposomal delivery vehicle using antibody such as Folate Receptor Alpha. By way of example in the next two experiments Liposomal L Gamma G6/Lps Hexa gG6 was encapsulated using the methods previously described above. Subsequently, pemetrexed, liposomal gamma pemetrexed hexaglutamate derivatives (Liposomal L gamma G6/Lps Hexa gG6) and Folate Receptor Alpha Targeted Liposomal L Gamma G6 (Liposomal gG6-FR1Ab), Free (unencapsulated) L gamma G6 were tested for cytotoxic activity on representative cell lines in non small cell lung cancer cells (NCI-H2342) and colorectal cancer cells (HT-29) as shown in
Cancer cell viability studies comparing the liposomal alpha pemetrexed hexaglutamate derivatives (liposomal L alphaG6/Lps Hexa aG6 and liposomal D alphaG6/Lps Hexa aDG6) and pemetrexed for cytotoxic activity on representative cell lines in breast, lung and ovarian cancer are shown in
The major toxicities seen in patients treated with pemetrexed is bone marrow suppression which manifests as a decrease in blood counts including neutrophil counts (a type of white blood cells). There is also some adverse effect on the lining of the mouth and gut that manifests as diarrhea and mucositis, as well as an adverse effect on the liver in some instances. To assess the above-mentioned toxicities, treatment of the liposomal alpha pemetrexed hexaglutamate derivatives (L and D) and pemetrexed was measured at 48 hours on CD34+ cells that were differentiated into neutrophils, CCD841 colon epithelium cells and AML12 liver cells. As shown in
Example 3
Methods
Production of Targeted Gamma Hexaglutamated Pemetrexed (HGP) Liposomes
Gamma HGP (gG6) was encapsulated in liposomes and the liposomes were downsized and purified according to procedures essentially as set forth above in Example 1.
Antibody Conjugation
Activated liposomes were prepared by adding DSPE-PEG-maleimide to the lipid composition. The liposomes contain four different lipids: hydrogenated soy phosphatidylcholine (HSPC), cholesterol, 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000] (DSPE-PEG-2000), and 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[maleimide (polyethylene glycol)-2000] (DSPE-PEG-maleimide), in ratios of 3:2:0.1125:0.0375.
Antibody thiolation was accomplished through use of Traut's reagent (2-iminothiolane) to attach a sulfhydryl group onto primary amines Antibody was suspended in PBS at a concentration of 0.9-1.6 mg/ml. Traut's reagent (14 mM) was added to antibody solution at a final concentration of 1-5 mM and then removed through dialysis after one-hour incubation at room temperature. Thiolated antibody was added to activated liposomes at a ratio of 60 g/mol phosphate lipids, and the reaction mixture was incubated for one hour at room temperature and over-night at 4 uL-cysteine was used to terminate the reaction and unconjugated antibody was removed through dialysis.
Exemplary direct and post insertion antibody-liposome conjuation methods are provided below.
Exemplary Antibody Conjugation Method 1: Direct Conjugation
Antibody or its fragments, such as Fab or scFv, can be conjugated directly onto thiol-reactive liposome. Thiol-reactive liposomes are prepared by adding DSPE-PEG-maleimide to the lipid composition. The liposomes contain four different lipids: hydrogenated soy phosphatidylcholine (HSPC), cholesterol, 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000] (DSPE-PEG-2000), and 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[maleimide (polyethylene glycol)-2000] (DSPE-PEG-maleimide), in ratios of 3:2:0.1125:0.0375.
Antibody (or its fragments, such as Fab or scFv) thiolation is accomplished through use of Traut's reagent (2-iminothiolane) to attach a sulfhydryl group onto primary amines Antibody (or its fragment) is suspended in PBS at a concentration of 0.9-1.6 mg/ml. Traut's reagent (14 mM) is added to antibody (or its fragment) solution at a final concentration of 1-5 mM and then removed through dialysis after one-hour incubation at room temperature. Thiolated antibody (or its fragment) is added to thiol-reactive liposome at a ratio of 60 g/mol phosphate lipids, and the reaction mixture is incubated for one hour at room temperature and over-night at 4° C. L-cysteine is used to terminate the reaction and unconjugated antibody (or its fragment) is removed through dialysis.
Antibody or its fragments, such as Fab or scFv, which contains a cysteine residue at the C-terminal can be conjugated directly onto the liposome by incubating a reduced antibody (or its fragment) with thiol-reactive liposome. Antibody (or its fragment) with a cysteine tail is dissolved and reduced by a 10-20 mM reducing reagent (such as 2-mercaptoethylamine, cysteine, or dithioerythritol) at pH<7. The excess reducing reagent is removed thoroughly by size exclusion chromatography or dialysis. The purified and reduced antibody (or its fragment) can be directly conjugated to the thiol-reactive liposome.
Exemplary Antibody Conjugation Method 2: Post Insertion
Antibody or its fragments, such as Fab or scFv, which contains a cysteine residue at the C-terminal can be conjugated and incorporated into the liposome through a “post insertion” method. Micelles of thiol-reactive lipopolymer (such as DSPE-PEG-maleimide) is prepared by dissolving in an aqueous solution at 10 mg/ml. Antibody (or its fragment) with a cysteine tail is dissolved and reduced by a 10-20 mM reducing reagent (such as 2-mercaptoethylamine, cysteine, or dithioerythritol) at pH<7. The excess reducing reagent is removed thoroughly by size exclusion chromatography or dialysis. The purified and reduced antibody (or its fragment) is then incubated with the micelles of thiol-reactive lipopolymers at a molar ratio of 1:4. At the end of the reaction, the excess maleimide groups are quenched by a small amount of cysteine (1 mM) or mercaptoethanol. Unconjugated antibody (or its fragment) is removed by size exclusion chromatography. Purified conjugated micelles is then incubated with liposome at 37° C. or elevated temperature.
Physical Characteristics of the Nanoparticles
Cell viability was determined by CellTiter-Glo® (CTG) luminescent cell viability assay on Day 3 (48 hour) and Day 4 (72 hour). This assay determines the number of viable cells in culture based on quantifying ATP that was present within, which in turn signals the presence of metabolically active cells. The CTG assay uses luciferase as a readout. To assess cell viability Dose response inhibition of pemetrexed, HGP and liposomes on different cancer cell growth were investigated using CellTiter-Glo® luminescent cell viability assay. Human cancer cells were harvested, counted and plated at a same cell density on Day 0. A series of 8 dilutions of each test article were added to the cells on Day 1. Dose response curve were generated and fit using GraphPad Prism and IC50 of each test article were calculated. A lower the IC50 is, the more potent the test article was in term of cancer cell growth inhibition.
Cells were seeded into 96-well plate at a cell density of 5×104 cells per well in 100 μl of fresh media on Day 0. Eight serial 2-fold dilutions of each test article in culture medium were generated and added to cells in triplicate on Day 1. In addition, three wells of cells were treated with vehicle (HBS for free drug or empty liposome for liposomal HGP) alone as a control.
On Days 3 and 4, 100 μl of CellTiterGlo® Reagent were added to each well and incubated at room temperature for 15 minutes. Luciferase luminescence were recorded for each well. In addition, 8 serial 2-fold dilutions of the vehicle (HBS or empty liposome) in culture medium were added into empty wells and included in the assay to generate the background luminescence signals. Luciferase signals were normalized by subtracting the background luminescence signal out of the read-outs respectively.
Human Normal Primary Bone Marrow CD34+ Cells were obtained from ATCC. (ATCC Catalog Number PCS-800-012). Cells were thawed at 37° C. for 1 minute and then placed on ice. The cells were then resuspended in StemSpan SFEM (Stem Cell Tech Catalog Number 9650) plus 10% heat inactivated fetal bovine serum (Corning 35-015-CV). The cells were plated into 96 well culture plates at a density of 2.5×104 cells/well. The following day, live cells were collected via centrifugation and resuspended in neutrophil growth media (StemSpan SFEM plus 10% Heat Inactivated fetal bovine serum plus 100 ng/ml human stem cell factor (Sigma Catalog Number H8416), 20 ng/ml human granulocyte colony-stimulation factor (Sigma Catalog Number H5541), and 10 ng/ml human recombinant IL3 (Sigma SRP3090) at a density of 2.5×104 cells/well. Cells were incubated at 37° C. for 10 days. Fresh media was added every two days. Mature neutrophils were then collected and plated in 96 well plates at a density of 1×104 cells/well and incubated at 37° C. overnight. The next day, test article or vehicle was resuspended in neutrophil growth media and added to the plates. The cells were then incubated for either 48 hours or 72 hours at 37° C. and then assayed at each time point using the Cell Titer Glo Assay (Promega Catalog #G7572).
Methodologies used for cell line AML12 (non-cancerous liver cells) and CCD841 (non-cancerous colon epithelial cells) are similar to the methods used for cancer cells.
Results:
The dose response relationship of free pemetrexed gamma hexaglutamate (gG6), (non-targeted) liposomal gamma hexaglutamate (liposomal gG6), pemetrexed and folate receptor alpha targeting antibody (FR1Ab) liposomal pemetrexed gamma hexaglutamate (liposomal gG6-FR1Ab), in the NCI H2342 non-small cell lung cancer (NSCLC), adenocarcinoma subtype is shown in
Similar data is shown for the HT-29 colon cancer cell line in
Pralatrexate comprised a mixture of R- and S-diastereomeric folate derivatives and, as folate, has an important role in cell growth and proliferation.21 (link) The characterization of the plasma concentrations of pralatrexate (S-Diastereomer [PDX-10a] and R-Diastereomer [PDX-10b]) was a key secondary objective, determined using a validated LC-MS/MS bioanalytical method. PK parameters of pralatrexate (PDX-10a and PDX-10b) were calculated based on respective drug concentration–time data by a noncompartmental method using Phoenix WinNonlin (Certara, Princeton, NJ) version 8.3.1 or higher. The following PK parameters of pralatrexate (PDX-10a and PDX-10b) were estimated: area under the curve, rate of absorption, Tmax, total clearance, T1/2, and volume of distribution.
A DLT was defined as an adverse event (AE) that, because of its type, severity, or relationship to study drug, must be counted toward determining the MTD. For purposes of determining the MTD of pralatrexate (Folotyn; Acrotech Biopharma, East Windsor, NJ) plus CHOP (Fol-CHOP) treatment, AEs that were considered DLTs when they occurred during the first treatment cycle included severe infections (grade 4); grade 4 neutropenia lasting for ≥7 days despite granulocyte colony-stimulating factor administration; any grade 4 thrombocytopenia or any grade thrombocytopenia with clinically significant bleeding (excluding epistaxis); or grade ≥3 study treatment-related nonhematologic toxicity, excluding nausea/vomiting in the absence of appropriate antiemetic therapy that occurred during the first cycle of the Fol-CHOP therapy.
Once the MTD was established in part 1, an expansion cohort (part 2) applying the MTD was included to allow for better characterization of efficacy and safety. (
Patients were instructed to take leucovorin tablets (25 mg) 3 times a day for 2 days beginning 24 hours after each pralatrexate treatment as mucositis prophylaxis.20 The next dose of pralatrexate began at least 72 hours after the last dose of leucovorin administration.
Patients participated in the study for ∼26 weeks, which included a screening period (up to 30 days), up to six 3-week treatment cycles (18 weeks), and an end-of-study visit, which occurred at least 30 days after the last dose of pralatrexate.
The study was reviewed and approved by the institutional review boards at each of the 4 participating sites and was registered at as NCT02594267. The study conduct complied with the Declaration of Helsinki and followed International Conference on Harmonization Guidelines for Good Clinical Practice. All participating patients provided written informed consent and understood that study participation was voluntary.
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More about "Pralatrexate"
It functions by inhibiting the enzyme dihydrofolate reductase (DHFR), which is essential for the synthesis of DNA and cellular proliferation.
The SuperScript II Reverse Transcriptase and PrimeScript RT reagent kit are commonly used in RNA extraction and cDNA synthesis, while the RNeasy Mini Kit and RNAprotect aid in preserving RNA integrity.
The FACSCalibur flow cytometer and TaqMan PCR Master Mix, TaqMan Fast Advanced Master Mix, and TaqMan probes and primers are utilized for cell analysis and gene expression studies, respectively.
DMSO is a common solvent used in various experimental procedures.
By leveraging the power of PubCompare.ai's AI-powered platform, researchers can optimize their Pralatrexate studies by identifying the most accurate and reproducible protocols from scientific literature, preprints, and patents.
The intelligent comparison capabilities of the tool can help pinpoint the best products and procedures, enhancing research efficiency, accuracy, and reproducibility.
Experience seamless Pralatrexate optimization with PubCompare.ai and take your research to new heights.