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Propidium

Propidium is a fluorescent dye used in molecular biology and cell biology to stain nucleic acids.
It is commonly used as a marker for dead cells, as it can only enter cells with compromised membranes.
Propidium iodide binds to DNA by intercalating between the bases, allowing for the visualization and quantification of cellular DNA content.
This property makes it a useful tool in flow cytometry, fluorescence microscopy, and other analytical techniques to study cell cycle, apoptosis, and cell viability.
Propidium's ability to selectively stain dead cells makes it an important reagent in assessing cell health and integrity.

Most cited protocols related to «Propidium»

CHO AA8 cells (24 (link)) were grown in monolayer or suspension culture in αMEM supplemented with 10% fetal bovine serum, 100 µg/ml streptomycin and 100 U/ml penicillin. Cells were counted and analyzed on a Coulter® Multisizer II. The plating efficiency of AA8 and other repair-proficient cell lines was ∼90%, and that of 51D1 was ∼70%; the doubling times for AA8 and 51D1 were ∼13 and ∼16 h, respectively.
To determine the cell cycle distribution of each cell line 5 × 105 cells were treated with 10 µg/ml BrdUrd for 20 min at 37°, fixed with 70% ethanol and stained with fluorescein isothiocyanate (FITC)-conjugated anti-BrdUrd antibody (BD Biosciences) and propidium iodine to determine the proportion of cells in each phase and DNA content, respectively. Fluorescence measurements of each sample were made on a FACscan (Becton Dickinson) and the data analyzed using Cell Quest software.
Publication 2006
Antibodies, Anti-Idiotypic Cell Lines Cells CHO Cells Ethanol Fetal Bovine Serum Fluorescence Iodine isothiocyanate Penicillins Propidium Streptomycin

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Publication 2010
Adult Cells Culture Media Fibroblasts Gelatins Heart Hyperostosis, Diffuse Idiopathic Skeletal Infant, Newborn Iodine isolation Lentivirus Mus NRG1 protein, human Propidium PRSS1 protein, human Retroviridae Tail Tissues
The procedures were similar to those described recently [11] (link), [53] (link). For the passage immediately preceding experiments, CHO cells were transferred onto glass cover slips pre-treated with poly-L-lysine to improve cell adhesion. After several hours, a cover slip with cells was transferred into a glass-bottomed chamber (Warner Instruments, Hamden, CT) mounted on an Olympus IX71 inverted microscope equipped with an FV 300 confocal laser scanning system (Olympus America, Center Valley, PA). The chamber was filled with a buffer composed of (in mM): 136 NaCl, 5 KCl, 2 MgCl2, 2 CaCl2, 10 HEPES, and 10 Glucose (pH 7.4), with addition of 30 µg/ml of propidium iodide. The buffer osmolality was at 290–300 mOsm/kg, as measured with a freezing point microosmometer (Advanced Instruments, Inc., Norwood, MA). The chemicals were purchased from Sigma–Aldrich.
EPs were delivered to a selected cell (or a group of 2–4 cells) with a pair of tungsten rod electrodes (0.08-mm diameter, 0.15 mm gap). With a help of a robotic micromanipulator (MP-225, Sutter, Novato, CA), these electrodes were positioned precisely at 50 µm above the coverslip surface so that the selected cells were in the middle of the gap between their tips. Nearly rectangular 60-ns pulses were generated in a transmission line-type circuit, by closing a MOSFET switch upon a timed delivery of a TTL trigger pulse from pClamp software via a Digidata 1322A output (MDS, Foster City, CA). The exact PRF, the EP delivery protocol, and synchronization of EP delivery with image acquisitions were programmed in pClamp.
The E-field between the electrodes was determined by 3D simulations with a finite element Maxwell equations solver Amaze 3D (Field Precision, Albuquerque, NM). The exact EP shapes and amplitudes were captured and measured with a Tektronix TDS 3052 oscilloscope.
Differential-interference contrast and fluorescent images of cells (excitation: 488 nm; emission 605 nm) were collected every 10 sec (starting exactly 50 s prior to the first EP) using a 60x, 1.42 NA oil objective. Photomultiplier tube settings were biased towards high sensitivity and detection of even minimal propidium uptake, although massive uptake caused detector saturation. Images were quantified with MetaMorph v. 7.5 (MDS). All experiments were performed at a room temperature of 22–24°C.
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Publication 2011
Amaze Buffers Cell Adhesion Cells CHO Cells EP protocol Glucose HEPES Hypersensitivity Lysine Magnesium Chloride Microscopy Obstetric Delivery Poly A Precipitating Factors Propidium Propidium Iodide Pulse Rate Pulses Sodium Chloride Transmission, Communicable Disease Tungsten

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Publication 2013
Breast CD44 protein, human Cells Clone Cells Epithelial Cells Homo sapiens Immunofluorescence Iodine Propidium
For cell cycle analysis by FACS, cells suspended in Deitch buffer (10 mM Tris-hydrochloride (pH 7.5) / 5 mM MgCl2) and stained with 100 µg/ml propidium iodide44 were analyzed in a Coulter EPICS XL flow cytometer using SYSTEM II Version 3.0 software (Beckman-Coulter, Krefeld, Germany). The percentage of cells present in the sub-G1 peak, representing apoptotic cells, was calculated after exclusion of cell doublets. The sum of cells in G2 and S phase was defined as the percentage of proliferating cells. Alternatively, proliferating cells and pyknotic nuclei were counted manually from BrdU- and 4',6-Diamidino-2-phenylindole (DAPI)-stained cells on coverslips, respectively. For this purpose, in a survey, at least 10 different sections of one coverslip and at least 1000 cells were counted and the number of apoptotic, clearly pyknotic nuclei (at least 10) or clearly BrDU-positive stained cells was determined.
Publication 2010
Apoptosis Bromodeoxyuridine Buffers Cell Cycle Cell Nucleus Cells Magnesium Chloride Propidium Tromethamine

Most recents protocols related to «Propidium»

At the end of treatment, the cells were washed and resuspended in binding buffer (Annexin V PE Apoptosis Detection kit; BD Biosciences, East Rutherford, NJ). After incubation with annexin V-PE and propidium iodine (PI), binding buffer was added, and the cells were analyzed via fluorescence-activated cell sorting (FACScan, BD Biosciences). Data analysis was performed using Cell Quest software.
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Publication 2023
Annexin A5 Apoptosis Buffers Cells Iodine Propidium
Tunnel assay was performed according to DeadEnd™ Fluorometric TUNEL System (Promaga, Tokyo, Japan) manufacturer’s instructions. Briefly, tumor sections were treated with fresh xylene in a Coplin jar for 5 min twice at room temperature. Rehydrate the samples by sequentially immersing the slides through graded washes (100%, 95%, 85%, 70%, 50%, 0.85% NaCl, PBS) for 5 min. The tissue sections were fixed by immersing the slides in 4% methanol-free formaldehyde solution in PBS for 15 min. After washed in PBS for 5 min three times, the samples were incubated with 100 µl proteinase K (20 µg/ml) for 8–10 min. Then were washed and incubated with 100 µl Equilibration Buffer for 5-10 min. The tissue sections were fixed with 4% methanol-free formaldehyde solution in PBS for 5 min. Then washed and incubated with 50 µl of rTdT incubation buffer at 37 °C for 60 min in the dark. The reactions were terminated by incubated with 2X SSC for 15 min at room temperature. The samples were washed three times and were stained by propidium (1 µg/ml) in PBS for 15 min at room temperature in the dark. Then the samples were washed three times and analyzed by the Olympus FV1000 IX81-SIM Confocal Microscope (Olympus, Tokyo, Japan).
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Publication 2023
Biological Assay Buffers Endopeptidase K Fluorometry Formalin In Situ Nick-End Labeling Methanol Microscopy, Confocal Neoplasms Propidium Sodium Chloride Tissues Xylene
The cells were digested into a single-cell suspension, washed with 70% alcohol, then fixed for 4 h to overnight at 4 °C. Afterward, appropriate amounts of RNase A (KeyGEN BioTECH, Nanjing, China) and propidium (PI) (KeyGEN BioTECH, Nanjing, China) were added to the cell suspension. The cells were incubated at 37 °C for 30 min in the dark. Flow cytometry (BD FACSCalibur; BD Biosciences, NJ, USA) was then used to analyze the cells.
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Publication 2023
Cells Endoribonucleases Ethanol Flow Cytometry Propidium
Heterogeneous and 13C-labelled colonies were grown on SM medium with 1% 13C glucose and 200 µM lysine for three days. Colonies were then resuspended in 1.1 ml of SM with 0.2% 13C glucose, and 500 µl was added to a similar volume of amphotericin B solution followed by mixing and incubation for one h as described above. Cells were collected by centrifugation and resuspended in PBS. Before FACS, cells were sonicated for 20 s at 50 W (JSP Ultrasonic Cleaner model US21) to increase singlet efficiency. Cells were then stained with 8 µg ml–1 propidium iodine to identify live and dead cells, before FACS analysis. Live and dead cells were sorted on a BD Aria Fusion with BD FACSDiva (v.8.0.1) software (BD Biosciences) using a 488 nm excitation laser. The gating strategy is illustrated in Extended Data Fig. 7a. Sorted cells were collected by filtration through a 0.45 µm polyvinylidene difluoride membrane (Agilent, no. 200959–100) and washed from the filter with 200 µl of proteomics lysis buffer, followed by sample processing and targeted PRM measurement as described above.
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Publication 2023
Amphotericin B Buffers Cells Centrifugation Filtration Genetic Heterogeneity Glucose Iodine Lysine NRG1 protein, human polyvinylidene fluoride Propidium Tissue, Membrane Ultrasonics
Annexin V-PI Apoptosis Detection Kit (Sangene, Tianjin, China) and a ROS assay kit (EMD Millipore, Billerica, MA, USA) were utilized to perform apoptosis analysis as per the protocols provided by the manufacturer [45 (link), 46 (link)]. Concisely, HaCaT cells were plated into 6-well or 96-well tissue culture plates (triplicate) at a concentration of 5 × 104cells/cm2, followed by culturing in DMEM comprising 10 percent FBS for 24 hours. After cultivation, aspiration of the culture medium was carried out, and the cells were rinsed in PBS and subjected to culturing in DMEM comprising 2 percent FBS in the presence or absence of (control) 30 mM glucose for an extra 12-72 h. At the latest stage of cultivation, propidium iodine-Annexin V staining (San Jian, Tianjin, China) and reactive oxygen species (ROS) staining (Millipore) were conducted to determine apoptosis and ROS generation, respectively, at the specified time points following the manufacturer’s guidelines. Flow cytometry (BD Biosciences) was subsequently used to analyze the cells. For the detection of ROS, the probe dilution was done to a final concentration of 10 μM using a serum-free medium. The probe was introduced to the cells, placed in an incubator at 37° C with 5% CO2 for 30 minutes, and then washed with a serum-free medium. Flow cytometry (BD Biosciences) was then employed to examine the cells.
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Publication 2023
Annexin A5 Apoptosis Biological Assay Cells Flow Cytometry Glucose HaCaT Cells Iodine Propidium Reactive Oxygen Species Serum Technique, Dilution Tissues

Top products related to «Propidium»

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The FACSCalibur is a flow cytometry system designed for multi-parameter analysis of cells and other particles. It features a blue (488 nm) and a red (635 nm) laser for excitation of fluorescent dyes. The instrument is capable of detecting forward scatter, side scatter, and up to four fluorescent parameters simultaneously.
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Propidium iodide is a fluorescent dye commonly used in molecular biology and cell biology to identify dead cells in a population. It is membrane-impermeant and generally excluded from viable cells, making it useful for distinguishing between live and dead cells.
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The FACScan is a flow cytometry instrument manufactured by BD. It is designed to analyze and sort cells or particles in a fluid stream. The FACScan uses laser technology to detect and measure the physical and fluorescent characteristics of individual cells or particles as they pass through the instrument's flow cell.
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CellQuest software is a data acquisition and analysis software designed for flow cytometry applications. It provides tools for acquiring, processing, and analyzing flow cytometry data.
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The FACSCalibur flow cytometer is a compact and versatile instrument designed for multiparameter analysis of cells and particles. It employs laser-based technology to rapidly measure and analyze the physical and fluorescent characteristics of cells or other particles as they flow in a fluid stream. The FACSCalibur can detect and quantify a wide range of cellular properties, making it a valuable tool for various applications in biology, immunology, and clinical research.
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The CycleTEST PLUS DNA Reagent Kit is a laboratory product designed for the preparation and processing of DNA samples. The kit provides the necessary reagents and materials for DNA extraction, purification, and processing, enabling users to prepare DNA samples for further analysis.
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Propidium iodide is a fluorescent dye used to stain nucleic acids. It has the ability to bind to DNA and RNA, making it a useful tool for various applications in cell and molecular biology, such as cell cycle analysis and cell viability assays.
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The FITC Annexin V Apoptosis Detection Kit is a laboratory reagent used to detect and quantify apoptosis, a form of programmed cell death, in cell samples. The kit contains FITC-conjugated Annexin V, a protein that binds to phosphatidylserine, a molecule that is externalized during the early stages of apoptosis. The kit also includes a propidium iodide solution, which can be used to identify late-stage apoptotic or necrotic cells.
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RNase A is a ribonuclease enzyme used in molecular biology laboratories. It functions by catalyzing the hydrolysis of single-stranded RNA, cleaving the phosphodiester bonds between nucleotides.
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The FACSCanto II is a flow cytometer instrument designed for multi-parameter analysis of single cells. It features a solid-state diode laser and up to four fluorescence detectors for simultaneous measurement of multiple cellular parameters.

More about "Propidium"

Propidium, a versatile fluorescent dye, has become an essential tool in molecular biology and cell biology for staining nucleic acids and studying cellular health.
This intercalating agent, also known as PI or propidium iodide, is widely used to identify dead or dying cells with compromised membranes.
Its ability to selectively bind to DNA, allowing for the visualization and quantification of cellular DNA content, makes it a valuable asset in flow cytometry, fluorescence microscopy, and other analytical techniques.
Researchers frequently employ Propidium in combination with other dyes, such as FITC Annexin V, to assess apoptosis and cell viability.
The CycleTEST PLUS DNA Reagent Kit, which includes Propidium iodine and RNase A, is a popular tool for cell cycle analysis using FACSCalibur or FACSCanto II flow cytometers and CellQuest software.
This powerful combination enables researchers to accurately determine the distribution of cells in different phases of the cell cycle, a crucial aspect of understanding cellular processes and responses.
Beyond its use in cell cycle studies, Propidium's ability to selectively stain dead cells has made it an indispensable reagent in assessing cell health and integrity.
This property allows researchers to evaluate the efficacy of various treatments, such as drug candidates or environmental factors, on cell populations using techniques like flow cytometry.
PubCompare.ai, an AI-driven protocol comparison tool, can help researchers streamline their work with Propidium by providing access to the best protocols and products from literature, pre-prints, and patents.
This innovative platform can enhance reproducibility and accuracy in research, ensuring that researchers have the necessary information to optimize their Propidium-based experiments and achieve reliable, insightful results.