All metabolite reference standards underwent a two-step derivatization procedure. Therefore 1 mg of each standard was dissolved in a solution of 1 ml methanol:water:isopropanol (2.5:1:1 v/v). Then 10 μl of each standard solution were taken out and evaporated to dryness. First, methoximation was performed to inhibit the ring formation of reducing sugars, protecting also all other aldehydes and ketones. A solution of 40 mg/ml O-methylhydroxylamine hydrochloride, (CAS: [593-56-6]; Formula CH5NO.HCl; Sigma-Aldrich No. 226904 (98%)) in pyridine (99.99%) was prepared. The dried standards and 10 μl of the O-methylhydroxylamine reagent solution were mixed for 30 s in a vortex mixer and subsequently shaken for 90 minutes at 30°C. Afterwards, 90μl of N-methyl-N-trimethylsilyltrifluoroacetamide (MSTFA) with 1% trimethylchlorosilane (TMCS) (1 ml bottles, Pierce, Rockford IL) was added and shaken at 37°C for 30 min for trimethylsilylation of acidic protons to increase volatility of metabolites. A mixture of internal retention index (RI) markers was prepared using fatty acid methyl esters (FAME markers) of C8, C9, C10, C12, C14, C16, C18, C20, C22, C24, C26, C28 and C30 linear chain length, dissolved in chloroform at a concentration of 0.8 mg/ml (C8-C16) and 0.4 mg/ml (C18-C30). 2 μl of this RI mixture were added to the reagent solutions, transferred to 2 mL glass crimp amber autosampler vials. Data acquisition parameters are given in table 1 . Subsequent to data processing using the instrument manufacturer’s software programs, spectra and retention indices were manually curated into the new Leco FiehnLib (359-008-100) or automatically transferred by Agilent to the new Agilent FiehnLib (G1676AA).
>
Chemicals & Drugs
>
Organic Chemical
>
Pyridine
Pyridine
Pyridine is a heterocyclic aromatic compound with the chemical formula C5H5N.
It is a colorless liquid with a distinct, unpleasant odor.
Pyridine is an important organic solvent and chemical building block used in the production of a wide range of pharmaceutical, agricultural, and industrial products.
It is also a naturally occurring component in many foods and beverages.
Pyridine and its derivatives have a variety of biological activities and are used in medicinal chemistry for the development of new drugs.
Researchers can leverage the PubCompare.ai platform to efficiently locate the best protocols and product options for their pyrdine-related studies, enhancing the reproducibility and accuracy of their work.
It is a colorless liquid with a distinct, unpleasant odor.
Pyridine is an important organic solvent and chemical building block used in the production of a wide range of pharmaceutical, agricultural, and industrial products.
It is also a naturally occurring component in many foods and beverages.
Pyridine and its derivatives have a variety of biological activities and are used in medicinal chemistry for the development of new drugs.
Researchers can leverage the PubCompare.ai platform to efficiently locate the best protocols and product options for their pyrdine-related studies, enhancing the reproducibility and accuracy of their work.
Most cited protocols related to «Pyridine»
Acids
Aldehydes
Amber
Cardiac Arrest
Chloroform
Esters
Fatty Acids
Isopropyl Alcohol
Ketones
Methanol
methoxyamine
Protons
pyridine
Retention (Psychology)
Sugars
trimethylchlorosilane
Volatility
2-norbornene
Acids
Anhydrides
Bicarbonate, Sodium
Blood Vessel
Carboxylic Acids
Cold Temperature
Ethyl Ether
Hydroxyl Radical
Methylene Chloride
Neoplasm Metastasis
pyridine
Buffers
Cells
Chloroform
derivatives
Esters
Fatty Acids
Gas Chromatography
Methanol
methoxyamine hydrochloride
N,N'-monomethylenebis(pyridiniumaldoxime) dichloride
Nonesterified Fatty Acids
Parent
Phospholipids
pyridine
TERT protein, human
Ammonia
Anions
Argon
Arsenic
Arsenicals
Biological Assay
Carbon
Chromatography
formic acid
High-Performance Liquid Chromatographies
Hypersensitivity
Nylons
Peroxide, Hydrogen
Phosphoric Acids
Plasma
Polypropylenes
pyridine
Selenium
Urination
Urine
ASOs 1 , 3 and 4 (sequence 5′-GCTCATACTCGTAGGCCA-3′, position 791–808) and 2 (sequence 5′-CTCATACTCGTAGGCC-3′, position 792–807) are complementary to Mus musculus TNFRSF1A-associated via death domain (TRADD) mRNA (Genbank accession no. NM_001033161). The ASO lead 1a is the murine homolog (a G to A base change at position 5) of the human TRADD lead reported previously (28 (link)). Control oligonucleotides 5 (5′-GCCCAATCTCGTTAGCGA-3′) were designed with six mismatches to 4 , such that they contained ≥4 mismatches to all known mouse sequence. ASOs 6 and 7 (sequence TCTGGTACATGGAAGTCTGG, position 8232–8251) and 8 (sequence AAGTTGCCACCCACATTCAG, position 5586–5605) are complementary to Mus musculus apolipoprotein B (ApoB) mRNA (Genbank accession no. XM_137955.5). The sequences were identified by a screen of 5-10-5 MOE 20mer ASOs as described previously (29 (link)–31 (link)). ASOs 9 , 10 and 11 (sequence 5′-CTGCTAGCCTCTGGATTTGA-3′, position 1931–1950) are complementary to M.musculus phosphatase and tensin homolog (PTEN), mRNA (Genbank accession no. NM_008960). ASO 9 (18 (link)) and control oligonucleotide 12 (19 (link)) have been described previously.
MOE phosphoramidites were prepared as described previously (7 ,32 ,33 (link)). LNA and 2′-deoxyribonucleoside phosphoramidites were purchased from commercial suppliers. Oligonucleotides were prepared similar to that described previously (34 (link)) on either an Amersham AKTA 10 or AKTA 100 oligonucleotide synthesizer. Modifications from the reported procedure include: a decrease in the detritylation time to ∼1 min, as this step was closely monitored by UV analysis for complete release of the trityl group; phosphoramidite concentration was 0.1 M; 4,5-dicyanoimidazole catalyst was used at 0.7 M in the coupling step; 3-picoline was used instead of pyridine for the sulfurization step, and the time decreased from 3 to 2 min. The oligonucleotides were then purified by ion-exchange chromatography on an AKTA Explorer and desalted by reverse phase HPLC to yield modified oligonucleotides in 30–40% isolated yield, based on the loading of the 3′-base onto the solid support. Oligonucleotides were characterized by ion-pair-HPLC-MS analysis (IP-HPLC-MS) with an Agilent 1100 MSD system. The purity of the oligonucleotides was ≥90% (Supplementary Table S1).
MOE phosphoramidites were prepared as described previously (7 ,32 ,33 (link)). LNA and 2′-deoxyribonucleoside phosphoramidites were purchased from commercial suppliers. Oligonucleotides were prepared similar to that described previously (34 (link)) on either an Amersham AKTA 10 or AKTA 100 oligonucleotide synthesizer. Modifications from the reported procedure include: a decrease in the detritylation time to ∼1 min, as this step was closely monitored by UV analysis for complete release of the trityl group; phosphoramidite concentration was 0.1 M; 4,5-dicyanoimidazole catalyst was used at 0.7 M in the coupling step; 3-picoline was used instead of pyridine for the sulfurization step, and the time decreased from 3 to 2 min. The oligonucleotides were then purified by ion-exchange chromatography on an AKTA Explorer and desalted by reverse phase HPLC to yield modified oligonucleotides in 30–40% isolated yield, based on the loading of the 3′-base onto the solid support. Oligonucleotides were characterized by ion-pair-HPLC-MS analysis (IP-HPLC-MS) with an Agilent 1100 MSD system. The purity of the oligonucleotides was ≥90% (Supplementary Table S1).
Apolipoproteins B
Death Domain
Deoxyribonucleosides
High-Performance Liquid Chromatographies
Homo sapiens
Ion-Exchange Chromatographies
Mice, House
Mus
Muscle Tissue
Oligonucleotides
phosphoramidite
Phosphoric Monoester Hydrolases
Picoline
PTEN protein, human
pyridine
RNA, Messenger
Tensin
TNFRSF1A protein, human
Most recents protocols related to «Pyridine»
This assay was performed as described before52 (link),53 (link). Briefly, a 0.2 M NaOH with 40% pyridine solution was made fresh using a 1 M NaOH stock and 100% pyridine solution (Sigma–Aldrich, St. Louis, MO). 5 µL (i.e., 1/200) of 0.1 M potassium ferricyanide stock solution was added to 495 µL of the aforementioned NaOH + pyridine mix to generate the pyridine hemochrome assay solution. 50 µL of the assay solution was mixed with 50 µL of TBS buffer (50 mM Tris-HCl, 150 mM NaCl, pH = 7.4) and used as a blank. Next, 50 µL of the assay solution was mixed with 50 µL of MmcA in TBS buffer, and UV-vis scans were immediately performed using a Shimadzu 1900i (Shimadzu, Torrance, CA, USA) to record the oxidized spectra. A 10 mM stock solution of sodium dithionate was added to the protein assay mixture and UV-vis scans were performed using a Shimadzu 1900i (Shimadzu, Torrance, CA, USA) to record the fully reduced pyridine hemochrome spectra.
Full text: Click here
A significant peak at 2.5 ppm is ascribed to the methyl protons directly bonded to the pyridine ring. The chemical shift suggests their proximity to the electronegative nitrogen of the pyridine, causing a slight downfield shift compared to regular aliphatic methyl groups [20 (link)].
In summation, the 1H-NMR spectral data for DBIDDD resonates well with its proposed structure. Each peak offers a vital piece of evidence in the molecular puzzle, providing unequivocal support for the successful synthesis and purity of the compound.
In summation, the 1H-NMR spectral data for DBIDDD resonates well with its proposed structure. Each peak offers a vital piece of evidence in the molecular puzzle, providing unequivocal support for the successful synthesis and purity of the compound.
Full text: Click here
2-[(3-Ethynylphenyl)ethynyl]pyridine was synthesized
from 1-bromo-3-iodobenzene and 2-ethynylpyridine prepared as described
for 3-[(2-ethynylphenyl)ethynyl]pyridine above. Treatment of 2-(3-ethynylphenyl)ethynyl)pyridine
(0.295 g, 1.45 mmol) with NIS and silver(I) nitrate in acetone as
described for(1) yielded 2-(3-iodoethynyl-phenylethynyl)
pyridine as a colorless solid (0.393 g, 82%). 1H NMR (400
MHz, CDCl3): δ 8.62 (md, J = 4 Hz,
1H), 7.71–7.66 (m, 2H), 7.55 (td, J = 1.2,
7.6 Hz, 1H), 7.52 (d, J = 7.6 Hz, 1H), 7.42 (td, J = 1.2, 7.6 Hz, 1H), 7.31 (t, J = 7.6
Hz, 1H), 7.27–7.24 (m, 1H). 13C NMR (100 MHz, CDCl3): δ 150.3, 143.3, 136.4, 135.8, 132.9, 132.4, 128.6,
127.5, 124.0, 123.2, 122.8, 93.2, 89.4, 88.3, 8.3.
from 1-bromo-3-iodobenzene and 2-ethynylpyridine prepared as described
for 3-[(2-ethynylphenyl)ethynyl]pyridine above. Treatment of 2-(3-ethynylphenyl)ethynyl)pyridine
(0.295 g, 1.45 mmol) with NIS and silver(I) nitrate in acetone as
described for
pyridine as a colorless solid (0.393 g, 82%). 1H NMR (400
MHz, CDCl3): δ 8.62 (md, J = 4 Hz,
1H), 7.71–7.66 (m, 2H), 7.55 (td, J = 1.2,
7.6 Hz, 1H), 7.52 (d, J = 7.6 Hz, 1H), 7.42 (td, J = 1.2, 7.6 Hz, 1H), 7.31 (t, J = 7.6
Hz, 1H), 7.27–7.24 (m, 1H). 13C NMR (100 MHz, CDCl3): δ 150.3, 143.3, 136.4, 135.8, 132.9, 132.4, 128.6,
127.5, 124.0, 123.2, 122.8, 93.2, 89.4, 88.3, 8.3.
Full text: Click here
The starting material 6-bromo-1H-pyrrolo[3,2-c]pyridine (0.3 mmol, 0.06 g), 3,4,5-trimethoxyphenylboric acid (0.6 mmol, 0.13 g), K2CO3 (0.6 mmol, 0.083 g), pyridine (0.9 mmol, 0.071 g), and Cu(OAc)2 (0.6 mmol, 0.12 g) were dissolved in 1,4-dioxane (15 mL). Then the mixture was stirred at irradiated in a microwave reactor for 30 min at 85 °C. When the reaction was completed, the mixture was extracted with ethyl acetate (25 mL × 3). The combined organic layers were washed with brine, dried over Na2SO4, and purified by silica gel column chromatography or recrystallized to afford 6-bromo-1–(3,4,5-trimethoxyphenyl)-1H-pyrrolo[3,2-c]pyridine (16 ). 1H NMR (500 MHz, CDCl3) δ 8.73 (s, 1H), 7.56 (s, 1H), 7.31 (d, J = 3.3 Hz, 1H), 6.74 (d, J = 3.3 Hz, 1H), 6.63 (s, 2H), 3.92 (s, 3H), 3.91 (s, 6H); HRMS calcd for C16H16BrN2O3 [M + H]+ 363.0344, found 363.0314.
Protocol full text hidden due to copyright restrictions
Open the protocol to access the free full text link
Top products related to «Pyridine»
Sourced in United States, Germany, China, United Kingdom, France, Italy, Poland, Spain, Australia, India, Sao Tome and Principe, Switzerland, Canada, Singapore, Japan, Macao, Panama
Pyridine is a colorless, flammable liquid used as a solvent and as an intermediate in the production of various organic compounds. It has a distinctive pungent odor. Pyridine is commonly employed in chemical synthesis, pharmaceuticals, and the production of other industrial chemicals.
Sourced in United States, Germany, China, United Kingdom, Japan, Sao Tome and Principe, Canada
Methoxyamine hydrochloride is a chemical compound used as a laboratory reagent. It serves as a source of the methoxyamine functional group, which is commonly utilized in various chemical reactions and analytical procedures.
Sourced in Germany, United States, Italy, India, United Kingdom, China, France, Poland, Spain, Switzerland, Australia, Canada, Sao Tome and Principe, Brazil, Ireland, Japan, Belgium, Portugal, Singapore, Macao, Malaysia, Czechia, Mexico, Indonesia, Chile, Denmark, Sweden, Bulgaria, Netherlands, Finland, Hungary, Austria, Israel, Norway, Egypt, Argentina, Greece, Kenya, Thailand, Pakistan
Methanol is a clear, colorless, and flammable liquid that is widely used in various industrial and laboratory applications. It serves as a solvent, fuel, and chemical intermediate. Methanol has a simple chemical formula of CH3OH and a boiling point of 64.7°C. It is a versatile compound that is widely used in the production of other chemicals, as well as in the fuel industry.
Sourced in United States, Germany, United Kingdom, China, Italy, Sao Tome and Principe, France, Macao, India, Canada, Switzerland, Japan, Australia, Spain, Poland, Belgium, Brazil, Czechia, Portugal, Austria, Denmark, Israel, Sweden, Ireland, Hungary, Mexico, Netherlands, Singapore, Indonesia, Slovakia, Cameroon, Norway, Thailand, Chile, Finland, Malaysia, Latvia, New Zealand, Hong Kong, Pakistan, Uruguay, Bangladesh
DMSO is a versatile organic solvent commonly used in laboratory settings. It has a high boiling point, low viscosity, and the ability to dissolve a wide range of polar and non-polar compounds. DMSO's core function is as a solvent, allowing for the effective dissolution and handling of various chemical substances during research and experimentation.
Sourced in Germany, United States, India, United Kingdom, Italy, China, Spain, France, Australia, Canada, Poland, Switzerland, Singapore, Belgium, Sao Tome and Principe, Ireland, Sweden, Brazil, Israel, Mexico, Macao, Chile, Japan, Hungary, Malaysia, Denmark, Portugal, Indonesia, Netherlands, Czechia, Finland, Austria, Romania, Pakistan, Cameroon, Egypt, Greece, Bulgaria, Norway, Colombia, New Zealand, Lithuania
Sodium hydroxide is a chemical compound with the formula NaOH. It is a white, odorless, crystalline solid that is highly soluble in water and is a strong base. It is commonly used in various laboratory applications as a reagent.
Sourced in Germany, United States, Italy, India, China, United Kingdom, France, Poland, Spain, Switzerland, Australia, Canada, Brazil, Sao Tome and Principe, Ireland, Belgium, Macao, Japan, Singapore, Mexico, Austria, Czechia, Bulgaria, Hungary, Egypt, Denmark, Chile, Malaysia, Israel, Croatia, Portugal, New Zealand, Romania, Norway, Sweden, Indonesia
Acetonitrile is a colorless, volatile, flammable liquid. It is a commonly used solvent in various analytical and chemical applications, including liquid chromatography, gas chromatography, and other laboratory procedures. Acetonitrile is known for its high polarity and ability to dissolve a wide range of organic compounds.
Sourced in United States, Germany, United Kingdom, Poland, China, Bulgaria, India
4-dimethylaminopyridine is a chemical compound used as a laboratory reagent. It serves as a nucleophilic catalyst in various organic reactions. The compound is widely utilized in the synthesis of organic compounds and pharmaceutical intermediates.
Sourced in Germany, United States, United Kingdom, India, Italy, France, Spain, Australia, China, Poland, Switzerland, Canada, Ireland, Japan, Singapore, Sao Tome and Principe, Malaysia, Brazil, Hungary, Chile, Belgium, Denmark, Macao, Mexico, Sweden, Indonesia, Romania, Czechia, Egypt, Austria, Portugal, Netherlands, Greece, Panama, Kenya, Finland, Israel, Hong Kong, New Zealand, Norway
Hydrochloric acid is a commonly used laboratory reagent. It is a clear, colorless, and highly corrosive liquid with a pungent odor. Hydrochloric acid is an aqueous solution of hydrogen chloride gas.
Sourced in United States, United Kingdom, China, Germany, Belgium, Canada, France, India, Australia, Portugal, Spain, New Zealand, Ireland, Sweden, Italy, Denmark, Poland, Malaysia, Switzerland, Macao, Sao Tome and Principe, Bulgaria
Methanol is a colorless, volatile, and flammable liquid chemical compound. It is commonly used as a solvent, fuel, and feedstock in various industrial processes.
Sourced in Germany, United States, United Kingdom, Italy, India, France, China, Australia, Spain, Canada, Switzerland, Japan, Brazil, Poland, Sao Tome and Principe, Singapore, Chile, Malaysia, Belgium, Macao, Mexico, Ireland, Sweden, Indonesia, Pakistan, Romania, Czechia, Denmark, Hungary, Egypt, Israel, Portugal, Taiwan, Province of China, Austria, Thailand
Ethanol is a clear, colorless liquid chemical compound commonly used in laboratory settings. It is a key component in various scientific applications, serving as a solvent, disinfectant, and fuel source. Ethanol has a molecular formula of C2H6O and a range of industrial and research uses.
More about "Pyridine"
Pyridine is a versatile heterocyclic aromatic compound with the chemical formula C5H5N.
It is a colourless liquid with a distinct, unpleasant odor and is widely used as an important organic solvent and chemical building block in the production of a vast array of pharmaceutical, agricultural, and industrial products.
Pyridine and its derivatives possess a diverse range of biological activities, making them valuable in medicinal chemistry for the development of new drugs.
Researchers can leverage the powerful PubCompare.ai platform to efficiently locate the best protocols and product options for their pyridine-related studies, enhancing the reproducibility and accuracy of their work.
This AI-driven platform allows researchers to search across literature, pre-prints, and patents, and leverage AI-driven comparisons to identify the most reliable and effective methods.
Pyridine is closely related to other compounds such as Methoxyamine hydrochloride, Methanol, DMSO, Sodium hydroxide, Acetonitrile, 4-dimethylaminopyridine, and Hydrochloric acid, all of which have their own unique properties and applications.
Ethanol, for example, is often used in conjunction with pyridine in various chemical reactions and purification processes.
By exploring the synergies and interactions between pyridine and these related compounds, researchers can gain deeper insights and develop more innovative solutions for their pyridine-based studies.
The PubCompare.ai platform can be an invaluable tool in this process, helping researchers navigate the vast landscape of scientific literature and identify the most effective and reproducible protocols and products.
It is a colourless liquid with a distinct, unpleasant odor and is widely used as an important organic solvent and chemical building block in the production of a vast array of pharmaceutical, agricultural, and industrial products.
Pyridine and its derivatives possess a diverse range of biological activities, making them valuable in medicinal chemistry for the development of new drugs.
Researchers can leverage the powerful PubCompare.ai platform to efficiently locate the best protocols and product options for their pyridine-related studies, enhancing the reproducibility and accuracy of their work.
This AI-driven platform allows researchers to search across literature, pre-prints, and patents, and leverage AI-driven comparisons to identify the most reliable and effective methods.
Pyridine is closely related to other compounds such as Methoxyamine hydrochloride, Methanol, DMSO, Sodium hydroxide, Acetonitrile, 4-dimethylaminopyridine, and Hydrochloric acid, all of which have their own unique properties and applications.
Ethanol, for example, is often used in conjunction with pyridine in various chemical reactions and purification processes.
By exploring the synergies and interactions between pyridine and these related compounds, researchers can gain deeper insights and develop more innovative solutions for their pyridine-based studies.
The PubCompare.ai platform can be an invaluable tool in this process, helping researchers navigate the vast landscape of scientific literature and identify the most effective and reproducible protocols and products.