Regression analyses of resting HR, SDNN, and RMSSD were adjusted for gender, age, gender-age interaction, body mass index (BMI), BMI*BMI, the first 30 principal components, and genotyping chip (Affymetrix UK Biobank Axiom or Affymetrix UK BiLEVE Axiom array). To fully account for aerobic exercise capacity in HR increase and HR recovery, the model also included exercise duration, exercise program (30% or 50% maximum load), maximum workload achieved, and the interaction between exercise program and maximum workload achieved.
Participants were excluded if they stopped exercising earlier than planned, experienced chest-pain or other discomfort, were at medium-to-high cardiovascular risk
46 at the time of the test, or terminated exercise for unknown reasons. In a post-hoc analysis, the population was stratified by participants that reported taking sotalol medication, beta-blockers, anti-depressants, atropine, glycosides or other anti-cholinergic drugs, or were previously diagnosed with myocardial infarction, supraventricular tachycardia, bundle branch block, heart failure, cardiomyopathy, or previously had a pacemaker or ICD implant. In a post-hoc sensitivity analysis, the differences in beta estimates in participants with and without cardiovascular disease or HR-altering medication were assessed using a Chow test.
In total, 58,818 participants were included in the GWAS. The genome-wide association study and heritability analyses were performed using BOLT-LMM
53 (link) and BOLT-REML
54 (link), respectively. A conjugate gradient-based iterative framework for fast mixed-model computations was employed to accurately account for population structure and relatedness; additive effects were assumed. The BOLT software was used with 509,255 genotyped SNPs that were extracted from the final imputation set (to ensure a 100% call rate per SNP). After pruning (R
2 > 0.5, using plink ‘--indep-pairwise 50 5 0.5), LD scores also used by BOLT, were estimated from 2,000 randomly selected UK Biobank participants (who were selected after sample exclusions based on relatedness, missingness, and heterozygosity). To control for relatedness among participants in linear logistic, or cox regression analyses, we used cluster-robust standard errors with genetic family IDs as clusters. A family ID was given to individuals belonging together based on 3
rd-degree or closer as indicated by the kinship matrix, which was provided by UK Biobank (kinship coefficient > 0.0442). All statistical analyses other than the genome-wide analysis were carried out using R v3.3.2 or STATA/SE release 13.
Since the current study is by far the largest population-based study of electrocardiographic exercise tests, independent cohorts that matched this study in size and availability of variables (specific HR response variables and genetics) were unavailable for replication purposes. Therefore, a conservative genome-wide significant threshold of
p< 8.3 × 10
−9 was adopted to account for six independent traits, in accordance with similar multi-phenotype studies of this scale
55 (link)–59 (link).
Variants were considered to be independent if the pairwise LD (R
2) was less than 0.01. A locus was defined as the highest associated independent SNP +/− 1MB. The strongest associated variant within a locus was assigned the sentinel SNP. If there was evidence for multiple independent SNPs in one locus based on LD, it was confirmed by using linear regression and adjusting for the sentinel SNP.
Verweij N., van de Vegte Y.J, & van der Harst P. (2018). Genetic study links components of the autonomous nervous system to heart-rate profile during exercise. Nature Communications, 9, 898.