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Tenax

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Most cited protocols related to «Tenax»

Protein sets for 40 completely sequenced genomes of Archaea were downloaded from the NCBI FTP site [55 ] or from the RefSeq section of GenBank (Caldivirga maquilingensis IC-167, Cenarchaeum symbiosum and Uncultured methanogenic archaeon). Protein sequences of Thermoproteus tenax were kindly provided by Bettina Siebers with permission from the sequencing consortium. The procedure of COG construction involved the following steps.
1. All-against-all BLAST [56 (link)] search was used to establish the similarity relationships between the archaeal proteins. Lineage-specific expansions of paralogs were identified essentially as described previously [57 (link),58 (link)]. Initial clusters based on triangles of symmetrical best hits were constructed using a modified COG algorithm [11 (link),13 (link)]; the major difference in the current implementation was the strict symmetry requirement for the "best hit" relationship between proteins. This constraint lowers the number of false-positives but, in the presence of paralogs, leads to substantial underclustering [11 (link)]; this was rectified on the subsequent steps.
2. Multiple alignments of the initial cluster members were constructed using the MUSCLE program [59 (link)]; alignments were used to construct PSSMs for a PSI-BLAST search [56 (link)] against the database of Archaea proteins with the e-value threshold of 0.01; proteins (domains) were added to the corresponding best-scoring original clusters resulting in a set of expanded clusters.
3. Sequences of expanded cluster members were aligned using MUSCLE, and the PSSMs constructed from these alignment were used for a second round of PSI-BLAST search against the database of archaeal proteins. The search results were used to construct a similarity graph for the relationships between the expanded clusters. Formally, all statistically significant (e<0.01) hits in a search with the PSSM for a particular cluster were classified according to the cluster they belong to; clusters in the hit list were ranked according to the mean score across their members (members missing from the hit list were assigned an arbitrary score 2 bits below the significance threshold). An edge between the i-th and the j-th clusters was given weight equal to the lowest rank among the ij and ji relationships (i.e., if cluster j is the top-ranking hit when cluster i is the query but cluster i is the third-ranking hit for cluster j, then the edge connecting i and j is given the rank of 3). Connected components were extracted from the graph; pairs of nodes within a connected component were assigned an edge with a rank of infinity if they were not connected directly. A minimum-linkage clustering procedure was applied to the connected sets of clusters (if cluster i and j are merged, the edge between cluster k and the node, representing the merged clusters, is given the rank equal to the lowest rank of k-i and k-j edges), resulting in a rooted dendrogram of relationships between the clusters. Then each node on on the tree was labeled with the number of species that were present in all descendant clusters. Two rules were used to determine if the descendant clusters should be merged: i) if species-coverage of the node is at least 50% greater than that of any of the descendant nodes and ii) if, among the descendants of a node, one is species-rich and the other one is species-poor (formally, if si>20sj/(10-sj) where si and sj stand for the species-coverage of the species-rich and species-poor descendant nodes, respectively).
4. In parallel to the above procedures, a BLAST search against the COG 2003 database was performed, followed by using a modified COGNITOR program [11 (link),13 (link)] to assign archaeal proteins to prokaryotic COGs. Merged clusters with proteins assigned to different COGs were split into COG-specific clusters to avoid clustering of paralogous proteins that previously have been assigned to different curated COGs.
Publication 2007
Amino Acid Sequence Archaea Archaeal Proteins Genome, Archaeal Methanobacteria Muscle Tissue Prokaryotic Cells Proteins Species Specificity tenax Thermoproteus Trees
The purge and trap apparatus including a Hg gold trap for scrubbing the He purging gas, gas flowmeter, glass reaction vessels and spargers and Tenax traps and the trap desorption module were purchased from Brooks Rand (Seattle, WA). The GC column was made in-house from a 60 cm quartz tube (6 mm OD) that was heated and shaped to fit in a GC laboratory oven (Model 20, Quincy Lab. Inc., Chicago, IL); the column was silanized and packed with 15% OV3 on Chromosorb. The voltage output from trap desorption module was set to heat the Tenax trap to 200°C within 30 sec, confirmed by thermocouple readout. The GC oven was set at 85-90°C. Either He or He with 100 ppm Xe was used as the carrier gas for the GC at a flow rate of 70 ml min-1. This set-up is essentially the same as that described initially by Liang et al.(1 (link)). The outflow from the GC was mixed with an Ar stream (using the nebulizer gas supply of the ICP-MS) and then introduced directly into the ICP-MS. The use of a mixed gas (Xe in He) allows certain ICP-MS conditions (XYZ stage position and ‘nebulizer’ gas flow) to be optimized daily with the GC on-line. The ICP-MS was an Element 2 sector field instrument (Thermo Electron, Bremen, Germany) operated in low resolution mode. Instrument operating conditions are given in Table 1. Deadtime correction was performed according to Nelms et al.(11 ) Element specific chromatograms were exported in ASCII format and data processed in Microsoft XL.
Publication 2009
Blood Vessel Electrons Flowmeters Gold Nebulizers Quartz tenax
Genomic DNA extraction was performed using the Ultraclean Microbial DNA
isolation kit (Mo Bio Laboratories, Carlsbad, CA, U.S.A.), according to the
instructions of the manufacturer. All DNA extracts were diluted 10 × in
milliQ water and stored at 4 °C before their use as PCR templates.
For nucleotide sequence comparisons fragments of four loci were analysed:
LSU, SSU, ITS, and TUB. Amplification of LSU and SSU was conducted utilising
the primer combination LR0R (Rehner &
Samuels 1994
) and LR7
(Vilgalys & Hester 1990 (link))
for LSU sequencing and the primer pair NS1 and NS4
(White et al. 1990 )
for SSU. The PCRs were performed in a 2720 Thermal Cycler (Applied Biosystems,
Foster City, California) in a total volume of 12.5 μL. The PCR mixture
contained 0.5 μL 10 × diluted genomic DNA, 0.2 μM of each primer,
0.5 Unit Taq polymerase E (Genaxxon Bioscience, Germany), 0.04 mM (SSU) or
0.06 mM (LSU) of each of the dNTP, 2 mM MgCl2 and 1 × PCR
buffer E incomplete (Genaxxon Bioscience). Conditions for amplification for
both regions were an initial denaturation step of 5 min at 94 °C, followed
by 35 cycles of denaturation, annealing and elongation and a final elongation
step of 7 min at 72 °C. For the SSU amplification, the 35 cycles consisted
of 30 s at 94 °C, 50 s at 48 °C and 90 s at 72 °C; for the LSU 45
s at 94 °C, 45 s at 48 °C and 2 min at 72 °C. The loci ITS and TUB
were amplified as described by Aveskamp et al.
(2009a (link)), using the primer
pairs V9G (De Hoog & Gerrits van den
Ende 1998
) and ITS4 (White
et al. 1990
) for ITS sequencing and the BT2Fw and BT4Rd
primer pair (Aveskamp et al. 2009a) for sequencing of the TUB locus. PCR products were analysed
by electrophoresis in a 1.0 % (w/v) agarose gel containing 0.1 ug/mL ethidium
bromide in 1 × TAE buffer (0.4 M Tris, 0.05 M glacial acetetic acid 0.01
M ethylenediamine tetraacetic acid [EDTA], pH 7.85). The amplicons were
visualised under UV light. Hyperladder I (Bioline, Luckenwalde, Germany) was
applied as size standard.
The obtained amplicons were sequenced in both directions using the same
primer combinations, except for LSU, where an additional primer, LR5
(White et al. 1990 )
was further required to assure complete coverage of the locus. Sequencing
reactions were prepared with the BigDye terminator chemistry v. 3.1 (Applied
Biosystems) according to the manufacturer's recommendations. Sequence products
were purified with Sephadex G-50 Fine (Amersham Biosciences, Roosendaal, the
Netherlands) and subsequently separated and analysed on an ABI Prism 3730 DNA
Sequencer (Applied Biosystems). Consensus sequences were computed from the
forward and reverse sequences using the BioNumerics v. 4.61 software package
(Applied Maths, St-Martens-Latem, Belgium). The consensus sequences are
deposited in GenBank (For GenBank accession numbers see Tables
2,
3).

Isolates of Phoma and related genera used for DNA analyses. The
GenBank accession numbers in bold have been obtained from other studies.

Strain
no.
1
Holomorph2GenBank no.
Original substrateLocality
SSULSU
CBS 129.79Ampelomyces quisqualisEU754029EU754128 Mildew on Cucumis sativus Canada
CBS 543.70Aposphaeria populinaEU754031EU754130Populus canadensis Netherlands
CBS 246.79; PD
77/655
Ascochyta caulina T
EU754032EU754131Atriplex hastata Germany
CBS 544.74Ascochyta hordei var. hordeiEU754035EU754134Triticum aevestum South Africa
CBS 117477Ascochyta sp.
GU238202
GU237926
Salicornia australis New Zealand
CBS 265.94Asteromella tiliaeEU754040EU754139Tilia platyphilos Austria
CBS 431.74; PD
74/2447
Boeremia exigua var. exigua B
EU754084EU754183Solanum tuberosum Netherlands
CBS 341.67; CECT
20055; IMI 331912
Boeremia foveata B
GU238203
GU237947
Solanum tuberosum U.K.
CBS 148.94Chaetasbolisia erysiphoidesEU754041EU754140 Unknown
Unknown
CBS 216.75; PD
71/1030
Chaetosphaeronema hispidulumEU754045EU754144Anthyllis vulneraria Germany
CBS 589.79Coniothyrium concentricumEU754053EU754152Yucca sp.
Netherlands
CBS 797.95Coniothyrium fuckelii GU238204
GU237960
Rubus sp.
Denmark
CBS 400.71Coniothyrium palmarumEU754054EU754153Chamaerops humilis Italy
CBS 122787; PD
03486691
Coniothyrium sp.
EU754052EU754151 Unknown
Germany
CBS 183.55Didymella exigua T
EU754056EU754155Rumex arifolius France
CBS 524.77Didymella fabaeEU754034EU754133Phaseolus vulgaris Belgium
CBS 581.83A
Didymella rabiei GU238205
GU237970
Cicer arietinum Syria
CBS 173.73; ATCC
24428; IMI 164070
Epicoccum nigrum T
GU238206
GU237975
Dactylis glomerata U.S.A.
CBS 298.36Leptosphaeria biglobosa GU238207
GU237980
Brassica napus var. napobrassica Unknown
CBS 127.23; MUCL
9930
Leptosphaeria maculansEU754090EU754189Brassica sp.
Netherlands
CBS 939.69Leptosphaerulina australisEU754068EU754167 Soil
Netherlands
CBS 525.71Macroventuria anomochaeta T
GU238208
GU237984
Decayed canvas
South Africa
CBS 442.83Microsphaeropsis olivaceaEU754072EU754171Taxus baccata Netherlands
CBS 331.37Neottiosporina paspaliEU754073EU754172Paspalum notatum U.S.A.
CBS 122786; PD
99/1064-1
Paraconiothyrium minitansEU754075EU754174 Unknown
Unknown
CBS 626.68; IMI
108771
Peyronellaea gardeniae T
GQ387534GQ387595Gardenia jasminoides India
CBS 528.66; PD
63/590
Peyronellaea glomerata B
EU754085EU754184Chrysanthemum sp.
Netherlands
CBS 531.66Peyronellaea pinodella B
GU238209
GU238017
Trifolium pratense U.S.A.
CBS 235.55Peyronellaea pinodes GU238210
GU238021
Unknown
Netherlands
CBS 588.69Peyronellaea zeae-maydis T
EU754093EU754192Zea mays U.S.A.
CBS 110110Phaeosphaeria oryzaeGQ387530GQ387591Oryza sativa South Korea
CBS 297.74Phialophorophoma litoralisEU754078EU754177 Sea water
Montenegro
CBS 285.72Phoma apiicola B
GU238211
GU238040
Apium graveolens var. rapaceum Germany
CBS 337.65; ATCC
16195; IMI 113693
Phoma capitulum B
GU238212
GU238054
Soil
India
CBS 522.66Phoma chrysanthemicola T
GQ387521GQ387582Chrysanthemum morifolium U.K.
CBS 100311Phoma complanataEU754082EU754181Heracleum sphondylium Netherlands
CBS 345.78; PD
76/1015
Phoma dimorphospora GU238213
GU238069
Chenopodium quinoa Peru
CBS 527.66Phoma eupyrena B
GU238214
GU238072
Soil
Germany
CBS 161.78Phoma fallens B
GU238215
GU238074
Olea europaea New Zealand
CBS 170.70; ATCC
22707; CECT 20011; IMI 163514; PD 70/Alk
Phoma fimeti T
GQ387523GQ387584Apium graveolens Netherlands
CBS 178.93; PD
82/1062
Phoma flavescens T
GU238216
GU238075
Soil
Netherlands
CBS 314.80Phoma flavigena T
GU238217
GU238076
Water
Romania
CBS 633.92; ATCC
36786; VKM MF-325
Phoma fungicolaEU754028EU754127Microsphaera alphitoides on Quercus sp.
Ukraine
CBS 284.70Phoma glaucispora B
GU238218
GU238078
Nerium oleander Italy
CBS 175.93; PD
92/370
Phoma haematocycla T
GU238219
GU238080
Phormium tenax New Zealand
CBS 615.75; PD
73/665, IMI 199779
Phoma herbarum B
EU754087EU754186Rosa multiflora Netherlands
CBS 448.68Phoma heteromorphospora B
EU754088EU754187Chenopodium album Netherlands
CBS 467.76Phoma incompta B
GU238220
GU238087
Olea europaea Greece
CBS 253.92; PD
70/998
Phoma lini B
GU238221
GU238093
Water
U.S.A.
CBS 529.66; PD
66/521
Phoma macrostoma var. macrostoma B
GU238222
GU238098
Malus sylvestris Netherlands
CBS 316.90Phoma medicaginis var. medicaginis GU238223
GU238103
Medicago sativa Czech Republic
CBS 509.91; PD
77/920
Phoma minutispora GU238224
GU238108
Saline soil
India
CBS 501.91; PD
83/888
Phoma multipora B
GU238225
GU238109
Unknown
Egypt
CBS 376.91;
CBS 328.78, PD
77/1177
Phoma opuntiae B
GU238226
GU238123
Opuntia ficus-indica.
Peru
CBS 560.81; PD
92/1569; PDDCC 6614
Phoma paspali T
GU238227
GU238124
Paspalum dilatatum New Zealand
CBS 445.81; PDDCC
7049
Phoma pratorum T
GU238228
GU238136
Lolium perenne New Zealand
CBS 111.79; PD
76/437; IMI 386094
Phoma radicina B
EU754092EU754191Malus sylvestris Netherlands
CBS 138.96; PD
82/653
Phoma samarorum B
GQ387517GQ387578Phlox paniculata Netherlands
CBS 343.85; IMI
386097
Phoma terricola T
GQ387563GQ387624Globodera pallida Netherlands
CBS 630.68; PD
68/141
Phoma valerianae B
GU238229
GU238150
Valeriana phu Netherlands
CBS 539.63Phoma vasinfecta T
GU238230
GU238151
Chrysanthemum sp.
Greece
CBS 306.68Phoma violicola B
GU238231
GU238156
Viola tricolor Unknown
CBS 523.66; PD
66/270
Pleospora betae B
EU754080EU754179Beta vulgaris Netherlands
CBS 191.86; IMI
276975
Pleospora herbarum T
GU238232
GU238160
Medicago sativa India
CBS 257.68; IMI
331911
Pleurophoma cavaEU754100EU754199 Soil
Germany
CBS 398.61; IMI
070678
Pseudorobillarda phragmitis T
EU754104EU754203Phragmites australis U.K.
CBS 122789; PD
03486800
Pyrenochaeta acicolaEU754105EU754204Hordeum vulgare Unknown
CBS 306.65Pyrenochaeta lycopersici T
EU754106EU754205Lycopersicon esculentum Germany
CBS 407.76Pyrenochaeta nobilis T
EU754107EU754206Laurus nobilis Italy
CBS 252.60; ATCC
13735
Pyrenochaeta romeroi T
EU754108EU754209 Man
Venezuela
CBS 524.50Sporormiella minimaDQ678003DQ678056 Goat dung
Panama
CBS 343.86Stagonospora neglecta var. colorataEU754119EU754218Phragmites australis France
CBS 101.80; PD
75/909; IMI 386090
Stagonosporopsis andigena B
GU238233
GU238169
Solanum sp.
Peru
CBS 133.96; PD
79/127
Stagonosporopsis cucurbitacearum GU238234
GU238181
Cucurbita sp.
New Zealand
CBS 631.68; PD
68/147
Stagonosporopsis dennisii B
GU238235
GU238182
Solidago floribunda Netherlands
CBS 164.31Stenocarpella macrosporaEU754121EU754220Zea mays Unknown

ATCC: American Type Culture Collection, Virginia, U.S.A.; CBS:
Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; CECT:
Colección Española de Cultivos Tipo, Valencia University, Spain;
IMI: International Mycological Institute, CABI-Bioscience, Egham, Bakeham
Lane, U.K.; MUCL: Mycotheque de l'Universite catholique de Louvain,
Louvain-la-Neuve, Belgium; PD: Plant Protection Service, Wageningen, the
Netherlands; PDDCC: Plant Diseases Division Culture Collection, Auckland, New
Zealand; VKM: All-Russian Collection of Microorganisms, Pushchino, Russia.

T: Ex-type strain; B: Reference strain according to Boerema et al. (2004 ).

Strains from the Didymellaceae used for DNA analyses. The GenBank
accession numbers in bold have been obtained from other studies.

Strain
no.
1
Holomorph2GenBank no.
Original substrateLocality
LSUITSTUB
CBS 544.74Ascochyta hordei var. hordeiEU754134 GU237887
GU237488
Triticum aevestum South Africa
CBS 109.79; PD
77/747
Boeremia crinicola B
GU237927
GU237737
GU237489
Crinum powellii Netherlands
CBS 118.93; PD
70/195
Boeremia crinicola GU237928
GU237758
GU237490
Crinum sp.
Netherlands
CBS 101194; PD
79/687; IMI 373349
Boeremia diversispora GU237929
GU237716
GU237491
Phaseolus vulgaris Netherlands
CBS 102.80; PD
79/61; CECT 20049; IMI 331907
Boeremia diversispora B
GU237930
GU237725
GU237492
Phaseolus vulgaris Kenya
CBS 119730Boeremia exigua var. coffeae GU237942
GU237759
GU237504
Coffea arabica Brazil
CBS 109183; IMI
300060; PD 2000/10506
Boeremia exigua var. coffeae B
GU237943
GU237748
GU237505
Coffea arabica Cameroon
CBS 431.74; PD
74/2447
Boeremia exigua var. exigua B
EU754183FJ427001FJ427112Solanum tuberosum Netherlands
CBS 101150; PD
79/118
Boeremia exigua var. exigua GU237933
GU237715
GU237495
Cichorium intybus Netherlands
CBS 101197; PD
95/721
Boeremia exigua var. forsythiae GU237931
GU237718
GU237493
Forsythia sp.
Netherlands
CBS 101213; PD
92/959
Boeremia exigua var. forsythiae B
GU237932
GU237723
GU237494
Forsythia sp.
Netherlands
CBS 101196; PD
79/176
Boeremia exigua var. heteromorpha GU237934
GU237717
GU237496
Nerium oleander France
CBS 443.94Boeremia exigua var. heteromorpha B
GU237935
GU237866
GU237497
Nerium oleander Italy
CBS 569.79; PD
72/741
Boeremia exigua var. lilacis B
GU237936
GU237892
GU237498
Syringa vulgaris Netherlands
CBS 114.28Boeremia exigua var. linicola GU237937
GU237752
GU237499
Linum usitatissimum Netherlands
CBS 116.76; ATCC
32332; CECT 20022; CECT 20023; IMI 197074
Boeremia exigua var. linicola B
GU237938
GU237754
GU237500
Linum usitatissimum Netherlands
CBS 100167; PD
93/217
Boeremia exigua var. populi T
GU237939
GU237707
GU237501
Populus (x) euramericana Netherlands
CBS 101202; PD
82/942
Boeremia exigua var. populi GU237940
GU237719
GU237502
Salix sp.
Netherlands
CBS 101207; PD
94/614
Boeremia exigua var. pseudolilacis T
GU237941
GU237721
GU237503
Syringa vulgaris Netherlands
CBS 100354; PD
84/448
Boeremia exigua var. viburni B
GU237944
GU237711
GU237506
Viburnum opulus Netherlands
CBS 101211; PD
93/838
Boeremia exigua var. viburni GU237945
GU237722
GU237507
Viburnum sp.
Netherlands
CBS 109176; CECT
2828; PD 94/1394
Boeremia foveata B
GU237946
GU237742
GU237508
Solanum tuberosum Bulgaria
CBS 341.67; CECT
20055; IMI 331912
Boeremia foveata B
GU237947
GU237834
GU237509
Solanum tuberosum U.K.
CBS 366.91; PD
70/811
Boeremia hedericola GU237948
GU237841
GU237510
Hedera helix Netherlands
CBS 367.91; PD
87/229
Boeremia hedericola B
GU237949
GU237842
GU237511
Hedera helix Netherlands
CBS 378.67; PD
76/276
Boeremia lycopersici B
GU237950
GU237848
GU237512
Lycopersicon esculentum Netherlands
CBS 109172; PD
84/143
Boeremia lycopersici GU237951
GU237739
GU237513
Lycopersicon esculentum Netherlands
CBS 100353; PD
87/718
Boeremia noackiana B
GU237952
GU237710
GU237514
Phaseolus vulgaris Guatemala
CBS 101203; PD
79/1114
Boeremia noackiana GU237953
GU237720
GU237515
Phaseolus vulgaris Colombia
CBS 109170; PD
75/796
Boeremia sambuci-nigrae GU237954
GU237738
GU237516
Sambucus nigra Netherlands
CBS 629.68; CECT
20048; IMI 331913; PD 67/753
Boeremia sambuci-nigrae T
GU237955
GU237897
GU237517
Sambucus nigra Netherlands
CBS 126.93; PD
73/642
Boeremia strasseri GU237956
GU237773
GU237518
Mentha sp.
Netherlands
CBS 261.92; ATCC
244146; PD 92/318
Boeremia strasseri GU237957
GU237812
GU237519
Mentha piperita U.S.A.
CBS 109175; PD
79/524
Boeremia telephii B
GU237958
GU237741
GU237520
Sedum spectabile Netherlands
CBS 760.73; PD
71/1616
Boeremia telephii B
GU237959
GU237905
GU237521
Sedum spectabile Netherlands
CBS 148.94Chaetasbolisia erysiphoidesEU754140 GU237785
GU237522
Unknown
Unknown
CBS 187.83; PD
82/128
Didymella adianticola B
GU238035
GU237796
GU237576
Polystichum adiantiforme U.S.A.
CBS 258.92; PD
89/1887
Didymella adianticola GU238036
GU237811
GU237577
Polystichum adiantiforme Costa Rica
CBS 102634; PD
75/248
Didymella applanata GU237997
GU237726
GU237555
Rubus idaeus Netherlands
CBS 205.63Didymella applanata T
GU237998
GU237798
GU237556
Rubus idaeus Netherlands
CBS 234.37Didymella cannabis GU237961
GU237804
GU237523
Cannabis sativa Unknown
CBS 102635; PD
77/1131
Didymella catariae GU237962
GU237727
GU237524
Nepeta catenaria Netherlands
CBS 183.55Didymella exigua T
EU754155 GU237794
GU237525
Rumex arifolius France
CBS 524.77Didymella fabae GU237963
GU237880
GU237526
Phaseolus vulgrais Belgium
CBS 649.71Didymella fabae GU237964
GU237902
GU237527
Vicia faba Netherlands
PD 83/492
Didymella fabae GU237965
GU237917
GU237528
Phaseolus vulgaris Netherlands
PD 84/512
Didymella macropodii GU237966
GU237919
GU237529
Crucifer
Unknown
CBS 100190; PD
82/736
Didymella macropodii GU237967
GU237708
GU237530
Brassica napus Germany
CBS 126.54Didymella pisi GU237968
GU237772
GU237531
Pisum sativum Netherlands
CBS 122785; PD
78/517
Didymella pisi GU237969
GU237763
GU237532
Pisum sativum Netherlands
CBS 534.65Didymella rabiei GU237970
GU237886
GU237533
Cicer arietinum India
CBS 581.83a
Didymella rabiei GU237971
GU237894
GU237534
Cicer arietinum Syria
CBS 121.75; ATCC
32164; IHEM 3403; IMI 194767; PD 73/584
Didymella urticicola T
GU237972
GU237761
GU237535
Urtica dioica Netherlands
PD 73/570
Didymella urticicola GU237973
GU237914
GU237536
Urtica dioica Netherlands
CBS 454.64Didymella vitalbinaFJ515646FJ515605FJ515623Clematis vitalba France
CBS 138.25Diplodina coloradensisEU754158 GU237784
GU237537
Senecio sp.
Unknown
CBS 172.34“Dothiorella ulmi”EU754160 GU237789
GU237538
Ulmus sp.
U.S.A.
CBS 125.82; IMI
1331914; CECT 20044
Epicoccum nigrum GU237974
FJ426995FJ427106 Human
Netherlands
CBS 173.73; ATCC
24428; IMI 164070
Epicoccum nigrum T
GU237975
FJ426996FJ427107Dactylis glomerata U.S.A.
CBS 246.60; ATCC
22237; ATCC 16652; IMI 081601
Epicoccum pimprinum T
GU237976
FJ427049FJ427159 Soil
India
PD 77/1028
Epicoccum pimprinum GU237977
FJ427050FJ427160 Unknown
Unknown
CBS 179.80; PD
76/1018
Epicoccum sorghi GU237978
FJ427067FJ427173Sorghum vulgare Puerto Rico
CBS 627.68; PD
66/926
Epicoccum sorghi GU237979
FJ427072FJ427178Citrus sp.
France
CBS 213.55Leptosphaerulina americana GU237981
GU237799
GU237539
Trifolium pretense U.S.A.
CBS 275.59; ATCC
13446
Leptosphaerulina arachidicola GU237983
GU237820
GU237543
Arachis hypochea Taiwan
CBS 317.83Leptosphaerulina australisEU754166 GU237829
GU237540
Eugenia aromatica Indonesia
CBS 939.69Leptosphaerulina australisEU754167 GU237911
GU237541
Soil
Netherlands
CBS 235.58Leptosphaerulina trifolii GU237982
GU237806
GU237542
Trifolium sp.
Netherlands
CBS 525.71Macroventuria anomochaeta T
GU237984
GU237881
GU237544
decayed canvas
South Africa
CBS 502.72Macroventuria anomochaeta GU237985
GU237873
GU237545
Medicago sativa South Africa
CBS 526.71Macroventuria wentii GU237986
GU237881
GU237546
Unidentified plant material
U.S.A.
CBS 432.71Microsphaeropsis olivacea GU237987
GU237863
GU237548
Sorothamus sp.
Netherlands
CBS 233.77Microsphaeropsis olivacea GU237988
GU237803
GU237549
Pinus laricio France
CBS 442.83Microsphaeropsis olivaceaEU754171 GU237865
GU237547
Taxus baccata Netherlands
CBS 132.96; PD
93/853
Peyronellaea alectorolophi T
GU237989
GU237778
GU237550
Rhinanthus major Netherlands
CBS 185.85; PD
80/1191
Peyronellaea americana B
GU237990
FJ426972FJ427088Zea mays U.S.A.
CBS 568.97; PD
94/1544; ATCC 44494
Peyronellaea americana GU237991
FJ426974FJ427090Glycine max U.S.A.
PD 82/1059
Peyronellaea americana GU237992
FJ426980FJ427096 Nematode cyst
Unknown
CBS 360.84Peyronellaea anserina B
GU237993
GU237839
GU237551
Potatoflour
Netherlands
CBS 363.91; PD
79/712
Peyronellaea anserina GU237994
GU237840
GU237552
Pisum sativum Netherlands
CBS 315.90; PD
80/1190
Peyronellaea arachidicola GU237995
GU237827
GU237553
Arachis hypogaea Zimbabwe
CBS 333.75; ATCC
28333; IMI 386092; PREM 44889
Peyronellaea arachidicola T
GU237996
GU237833
GU237554
Arachis hypogaea South Africa
CBS 269.93; PD
78/1087
Peyronellaea aurea B
GU237999
GU237818
GU237557
Medicago polymorpha New Zealand
CBS 444.81; PDDCC
6546
Peyronellaea australis T
GU238000
GU237867
GU237558
Actinidia chinensis New Zealand
PD 77/919
Peyronellaea australis GU238001
GU237915
GU237559
Actinidea chinensis Unknown
CBS 109.92; PD
73/1405
Peyronellaea calorpreferens T
GU238002
FJ426983FJ427098 Undefined food material
Netherlands
CBS 630.97; ATCC
96683; IMI 361196; PD 96/2022
Peyronellaea calorpreferens GU238004
GU237925
GU237560
Heterodera glycines U.S.A.
CBS 875.97; PD
93/1503
Peyronellaea calorpreferens GU238003
GU237908
GU237561
Indoor environment
U.S.A.
CBS 123380; PD
84/1013
Peyronellaea coffeae-arabicae T
GU238005
FJ426993FJ427104Coffea arabica Ethiopia
CBS 123398; PD
84/1014
Peyronellaea coffeae-arabicae GU238006
FJ426994FJ427105Coffea arabica Ethiopia
PD 92/1460
Peyronellaea curtisii GU238012
FJ427041FJ427151Sprekelia Netherlands
CBS 251.92; PD
86/1145
Peyronellaea curtisii B
GU238013
FJ427038FJ427148Nerine sp.
Netherlands
CBS 377.91; PD
79/210
Peyronellaea eucalyptica B
GU238007
GU237846
GU237562
Eucalyptus sp.
Australia
CBS 508.91; PD
73/1413
Peyronellaea eucalyptica GU238008
GU237878
GU237563
Water
Croatia
CBS 302.79; PD
79/1156
Peyronellaea gardeniaeGQ387596FJ427002FJ427113 Air
Netherlands Antilles
CBS 626.68; IMI
108771
Peyronellaea gardeniae T
GQ387595FJ427003FJ427114Gardenia jasminoides India
CBS 464.97; MUCL
9882
Peyronellaea glomerata GU238009
FJ427012FJ427123 Indoor environment
Netherlands
CBS 528.66; PD
63/590
Peyronellaea glomerata B
EU754184FJ427013FJ427124Chrysanthemum sp.
Netherlands
CBS 103.25Peyronellaea lethalis GU238010
GU237729
GU237564
Unknown
Unknown
CBS 463.69Peyronellaea musae B
GU238011
FJ427026FJ427136Mangifera indica India
CBS 377.93; PD
80/976
Peyronellaea obtusa B
GU238014
GU237847
GU237565
Daucus carota Netherlands
CBS 391.93; PD
80/87
Peyronellaea obtusa B
GU238015
GU237858
GU237566
Spinacia oleracea Netherlands
CBS 318.90; PD
81/729
Peyronellaea pinodella GU238016
FJ427051FJ427161Pisum sativum Netherlands
CBS 531.66Peyronellaea pinodella B
GU238017
FJ427052FJ427162Trifolium pratense U.S.A.
CBS 100580; PD
98/1135
Peyronellaea pinodella GU238018
GU237713
GU237567
Glycine max Hungary
CBS 567.97; PD
97/2160
Peyronellaea pinodella GU238019
GU237891
GU237568
Glycine max Hungary
CBS 159.78b
Peyronellaea pinodes GU238020
GU237786
GU237569
Pisum sativum Iraq
CBS 285.49Peyronellaea pinodes GU238022
GU237823
GU237571
Primula auricula Switzerland
CBS 235.55Peyronellaea pinodes GU238021
GU237805
GU237570
Unknown
Netherlands
CBS 525.77Peyronellaea pinodes GU238023
GU237883
GU237572
Pisum sativum Belgium
CBS 525.77a
Peyronellaea pinodes GU238024
GU237882
GU237573
Pisum sativum Belgium
CBS 539.66; ATCC
16791; IMI 122266; PD 64/914
Peyronellaea pomorum var. pomorum B
GU238028
FJ427056FJ427166Polygonum tataricum Netherlands
CBS 285.76; ATCC
26241; IMI 176742; VKM F-1843
Peyronellaea pomorum var. circinata T
GU238025
FJ427053FJ427163Heracleum dissectum Russia
CBS 286.76; ATCC
26242; IMI 176743; VKM F-1844
Peyronellaea pomorum var. circinata GU238026
FJ427054FJ427164Allium nutans Russia
CBS 388.80; PREM
45736
Peyronellaea pomorum var. cyanea T
GU238027
FJ427055FJ427165Triticum sp.
South Africa
CBS 381.96; PD
71/706
Peyronellaea protuberans B
GU238029
GU237853
GU237574
Lycium halifolium Netherlands
CBS 281.83Peyronellaea sancta T
GU238030
FJ427063FJ427170Ailanthus altissima South Africa
LEV 15292
Peyronellaea sancta GU238031
FJ427065FJ427172Gleditsia triacantha Unknown
CBS 110.92; PD
76/1010
Peyronellaea subglomerata B
GU238032
FJ427080FJ427186Triticum sp.
U.S.A.
PD 78/1090
Peyronellaea subglomerata GU238033
FJ427081FJ427187Zea mays Unknown
CBS 588.69Peyronellaea zeae-maydis T
EU754186FJ427086FJ427190Zea mays U.S.A.
CBS 179.97Phoma acetosellae GU238034
GU237793
GU237575
Rumex hydrolapathum Netherlands
CBS 379.93; PD
82/945
Phoma aliena GU238037
GU237851
GU237578
Berberis sp.
Netherlands
CBS 877.97; PD
94/1401
Phoma aliena GU238038
GU237910
GU237579
Buxus sempervirens Netherlands
CBS 381.91; PD
79/1110
Phoma anigozanthi B
GU238039
GU237852
GU237580
Anigozanthus maugleisii Netherlands
CBS 107.96; PD
73/598
Phoma aquilegiicola B
GU238041
GU237735
GU237582
Aconitum pyramidale Netherlands
CBS 108.96; PD
79/611
Phoma aquilegiicola B
GU238042
GU237736
GU237583
Aquilegia sp.
Netherlands
CBS 125.93; PD
77/1029
Phoma arachidis-hypogaeae B
GU238043
GU237771
GU237584
Arachis hypogaea India
CBS 383.67; PD
65/223
Phoma aubrietiae B
GU238044
GU237854
GU237585
Aubrietia hybrida cv. Superbissima
Netherlands
CBS 627.97; PD
70/714
Phoma aubrietiae B
GU238045
GU237895
GU237586
Aubrietia sp.
Netherlands
CBS 714.85; PD
74/265
Phoma bellidis B
GU238046
GU237904
GU237587
Bellis perennis Netherlands
PD 94/886
Phoma bellidis GU238047
GU237923
GU237581
Bellis sp.
Netherlands
CBS 109942; PD
84/402
Phoma boeremae T
GU238048
FJ426982FJ427097Medicago littoralis cv. Harbinger
Australia
CBS 120105Phoma brasiliensis T
GU238049
GU237760
GU237588
Amaranthus sp.
Brazil
CBS 357.84Phoma bulgarica T
GU238050
GU237837
GU237589
Trachystemon orientale Bulgaria
CBS 124515; PD
82/1058
Phoma bulgarica GU238051
GU237768
GU237590
Trachystemon orientale Bulgaria
CBS 448.83Phoma calidophila T
GU238052
FJ427059FJ427168 Soil
Egypt
PD 84/109
Phoma calidophila GU238053
FJ427060FJ427169Cucumis sativus Europe
CBS 128.93; PD
79/140
Phoma chenopodiicola B
GU238055
GU237775
GU237591
Chenopodium quinoa cv. Sajana
Peru
CBS 129.93; PD
89/803
Phoma chenopodiicola GU238056
GU237776
GU237592
Chenopodium quinoa cv. Sajana
Peru
CBS 102.66Phoma clematidinaFJ515630FJ426988FJ427099Clematis sp.
U.K.
CBS 108.79; PD
78/522
Phoma clematidina T
FJ515632FJ426989FJ427100Clematis sp.
Netherlands
CBS 507.63; MUCL
9574; PD 07/03486747
Phoma clematidis-rectae T
FJ515647FJ515606FJ515624Clematis sp.
Netherlands
PD 95/1958
Phoma clematidis-rectaeFJ515648FJ515607FJ515625Clematis sp.
Netherlands
CBS 100409Phoma commelinicicola B
GU238057
GU237712
GU237593
Tradescantia sp.
New Zealand
CBS 100311Phoma complanataEU754181 GU237709
GU237594
Heracleum sphondylium Netherlands
CBS 268.92; PD 75/3
Phoma complanataEU754180 GU237815
GU237595
Angelica sylvestris Netherlands
CBS 506.91; IMI
215229; PD 91/876
Phoma costarricensis B
GU238058
GU237876
GU237596
Coffea sp.
Nicaragua
CBS 497.91; PD
79/209
Phoma costarricensis GU238059
GU237870
GU237597
Coffea arabica Unknown
CBS 193.82Phoma crystallifera T
GU238060
GU237797
GU237598
Chamaespartium sagittale Austria
CBS 124513; PD
73/1414
Phoma dactylidis T
GU238061
GU237766
GU237599
Dactylis glomerata U.S.A.
CBS 133.93; PD
88/961; IMI 173142
Phoma destructiva var. destructiva GU238064
GU237779
GU237602
Solanum lycopersicum Guadeloupe
CBS 378.73; CECT
2877
Phoma destructiva var. destructiva B
GU238063
GU237849
GU237601
Lycopersicon esculentum Tonga
CBS 162.78; PD
77/725
Phoma destructiva var. diversispora GU238062
GU237788
GU237600
Lycopersicon esculentum Netherlands
CBS 507.91; PD
74/148
Phoma dictamnicola B
GU238065
GU237877
GU237603
Dictamnus albus Netherlands
CBS 109179; PD
90/835-1
Phoma digitalis GU238066
GU237744
GU237604
Digitalis sp.
Netherlands
CBS 229.79; LEV
7660
Phoma digitalis B
GU238067
GU237802
GU237605
Digitalis purpurea New Zealand
CBS 346.82Phoma dimorpha T
GU238068
GU237835
GU237606
Opuntiae sp.
Spain
CBS 186.83; PD
82/47
Phoma draconis B
GU238070
GU237795
GU237607
Dracaena sp.
Rwanda
CBS 123.93; PD
77/1148
Phoma eupatorii B
GU238071
GU237764
GU237608
Eupatorium cannabinum Netherlands
CBS 374.91; PD
78/391
Phoma eupyrena B
GU238072
FJ426999FJ427110Solanum tuberosum Netherlands
CBS 527.66; ATCC
22238
Phoma eupyrena B
GU238073
FJ427000FJ427111 Soil
Germany
CBS 633.92; ATCC
36786; VKM MF-325
Phoma fungicolaEU754127 GU237900
GU237609
Microsphaera alphitoides on Quercus sp.
Ukraine
CBS 112.96Phoma glaucii GU238077
GU237750
GU237610
Dicentra sp.
Netherlands
CBS 114.96; PD
94/888
Phoma glaucii B
FJ515649FJ515609FJ515627Chelidonium majus Netherlands
CBS 377.67Phoma gossypiicola B
GU238079
GU237845
GU237611
Gossypium hirsutum U.S.A.
CBS 104.80; PD
74/1017
Phoma henningsii B
GU238081
GU237731
GU237612
Acacia mearnesii Kenya
CBS 502.91; PD
86/276
Phoma herbarum GU238082
GU237874
GU237613
Nerium sp.
Netherlands
CBS 615.75; PD
73/665; IMI 199779
Phoma herbarum B
EU880896FJ427022FJ427133Rosa multiflora Netherlands
CBS 629.97; PD
76/1017
Phoma herbicola B
GU238083
GU237898
GU237614
Water
U.S.A.
CBS 105.80; PD
75/908
Phoma huancayensis T
GU238084
GU237732
GU237615
Solanum sp.
Peru
CBS 390.93; PD
77/1173
Phoma huancayensis GU238085
GU237857
GU237616
Chenopodium quinoa Peru
CBS 220.85Phoma humicola B
GU238086
GU237800
GU237617
Franseria sp.
U.S.A.
CBS 123394Phoma infossa GU238088
FJ427024FJ427134Fraxinus pennsylvanica Argentina
CBS 123395Phoma infossa T
GU238089
FJ427025FJ427135Fraxinus pennsylvanica Argentina
CBS 252.92; PD
80/1144
Phoma insulana B
GU238090
GU237810
GU237618
Olea europaea Greece
CBS 124.93; PD
87/269
Phoma labilis B
GU238091
GU237765
GU237619
Solanum lycopersicum Netherlands
CBS 479.93; PD
70/93
Phoma labilis GU238092
GU237868
GU237620
Rosa sp.
Israel
CBS 347.82Phoma longicolla GU238094
GU237836
GU237621
Opuntiae sp.
Spain
CBS 124514; PD
80/1189; VPRI 1239
Phoma longicolla T
GU238095
GU237767
GU237622
Opuntiae sp.
Spain
CBS 223.69Phoma macrostoma var. incolorata B
GU238096
GU237801
GU237623
Acer pseudoplatanus Switzerland
CBS 109173; PD
83/908
Phoma macrostoma var. incolorata B
GU238097
GU237740
GU237624
Malus sylvestris Netherlands
CBS 529.66; PD
66/521
Phoma macrostoma var. macrostoma B
GU238098
GU237885
GU237625
Malus sylvestris Netherlands
CBS 482.95Phoma macrostoma var. macrostoma GU238099
GU237869
GU237626
Larix decidua Germany
CBS 259.92; IMI
286996; PD 91/272
Phoma matteuciicola B
GU238100
GU237812
GU237627
Matteuccia struthiopteris Canada
CBS 112.53Phoma medicaginis var. macrospora B
GU238101
GU237749
GU237628
Medicago sativa U.S.A.
CBS 404.65; IMI
116999
Phoma medicaginis var. macrospora B
GU238102
GU237859
GU237629
Medicago sativa Canada
CBS 316.90Phoma medicaginis var. medicaginis GU238103
GU237828
GU237630
Medicago sativa Czech Republic
CBS 105.95Phoma microchlamydospora T
GU238104
FJ427028FJ427138Eucalyptus sp.
U.K.
CBS 491.90Phoma microchlamydospora GU238105
FJ427029FJ427139 Unidentified vegetable
U.K.
CBS 315.83Phoma minor GU238106
GU237826
GU237631
Syzygium aromaticum Indonesia
CBS 325.82Phoma minor T
GU238107
GU237831
GU237632
Syzygium aromaticum Indonesia
CBS 110.79; PD
65/8875; MUCL 8247
Phoma multirostrata GU238110
FJ427030FJ427140Cucumis sativus Netherlands
CBS 274.60; IMI
081598
Phoma multirostrata T
GU238111
FJ427031FJ427141 Soil
India
CBS 368.65; PD
92/1757; HACC 154
Phoma multirostrata GU238112
FJ427033FJ427143 Soil
India
PD 83/48
Phoma multirostrata GU238113
FJ427037FJ427147Cucumis sativus Unknown
CBS 117.93; PD
83/90
Phoma nebulosa GU238114
GU237757
GU237633
Mercurialis perennis Netherlands
CBS 503.75; ATCC
32163; DSM 63391; IMI 194766; PD 75/4
Phoma nebulosa B
GU238115
GU237875
GU237634
Urtica dioica Austria
CBS 358.71Phoma negriana B
GU238116
GU237838
GU237635
Vitis vinifera Germany
PD 79/74
Phoma negriana GU238117
GU237916
GU237636
Vitis vinifera Netherlands
CBS 116.96; PD
95/7930
Phoma nigripycnidia B
GU238118
GU237756
GU237637
Vicia cracca Russia
CBS 114.93; PD
74/228
Phoma novae- verbascicola GU238119
GU237753
GU237638
Verbascum sp.
Netherlands
CBS 127.93; PD
92/347
Phoma novae-verbascicola B
GU238120
GU237774
GU237639
Verbascum densiflorum Netherlands
CBS 654.77Phoma omnivirens GU238122
FJ427043FJ427153 Unknown
India
CBS 991.95Phoma omnivirens GU238121
FJ427044FJ427154 Soil
Papua New Guinea
CBS 560.81; PD
92/1569; PDDCC 6614
Phoma paspali T
GU238124
FJ427048FJ427158Paspalum dilatatum New Zealand
CBS 561.81; PDDCC
6615
Phoma paspali GU238125
GU237889
GU237640
Lolium perenne New Zealand
CBS 124516; PD
84/453
Phoma pedeiae GU238126
GU237769
GU237641
Orchidaceae Netherlands
CBS 124517; PD
92/612A
Phoma pedeiae T
GU238127
GU237770
GU237642
Schefflera elegantissima Netherlands
CBS 267.92; PD
76/1014
Phoma pereupyrena T
GU238128
GU237814
GU237643
Coffea arabica India
CBS 268.93;
CBS 108.93; PD
88/720
Phoma piperis B
GU238129
GU237816
GU237644
Peperomia pereskifolia Netherlands
PD 90/2011
Phoma piperis GU238130
GU237921
GU237645
Peperomia sp.
Netherlands
CBS 284.93; PD
75/907
Phoma plurivora GU238131
GU237822
GU237646
Medicago sativa Australia
CBS 558.81; PDDCC
6873
Phoma plurivora T
GU238132
GU237888
GU237647
Setaria sp.
New Zealand
CBS 109181; PD
83/757
Phoma polemonii B
GU238133
GU237746
GU237648
Polemonium caeruleum Netherlands
CBS 116.93; PD
71/884
Phoma poolensis B
GU238134
GU237755
GU237649
Antirrhinum majus Netherlands
CBS 113.20; PD
92/774
Phoma poolensis GU238135
GU237751
GU237650
Unknown
Unknown
CBS 372.91; PD
75/690
Phoma putaminum B
GU238137
GU237843
GU237651
Ulmus sp.
Netherlands
CBS 130.69; CECT
20054; IMI 331916
Phoma putaminum B
GU238138
GU237777
GU237652
Malus sylvestris Denmark
CBS 109177; LEV
15165; PD 2000/9941
Phoma rhei B
GU238139
GU237743
GU237653
Rheum rhaponticum New Zealand
CBS 298.89Phoma saxea GU238140
GU237824
GU237654
Limestone
Germany
CBS 419.92Phoma saxea T
GU238141
GU237860
GU237655
Corroded mediterranean marble
Germany
CBS 122.93; PD
77/1049
Phoma selaginellicola B
GU238142
GU237762
GU237656
Selaginella sp.
Netherlands
CBS 160.78; LEV
11451
Phoma senecionis B
GU238143
GU237787
GU237657
Senecio jacobaea New Zealand
CBS 249.92; PD
78/1088
Phoma subherbarum GU238144
GU237808
GU237658
Solanum sp.
Peru
CBS 250.92; DAOM
171914; PD 92/371
Phoma subherbarum B
GU238145
GU237809
GU237659
Solanum sp.
Peru
CBS 305.79A; DAOM
170848
Phoma subherbarum GU238146
GU237825
GU237660
Zea mays Peru
CBS 135.93; PD
83/87
Phoma sylvatica B
GU238147
GU237781
GU237661
Melampyrum pratense Netherlands
CBS 874.97; PD
93/764
Phoma sylvatica B
GU238148
GU237907
GU237662
Melampyrum pratense Netherlands
CBS 436.75Phoma tropica T
GU238149
GU237864
GU237663
Saintpaulia ionantha Germany
CBS 876.97; PD
82/1008
Phoma versabilis B
GU238152
GU237909
GU237664
Silene sp.
Netherlands
PD 2000/1379
Phoma versabilis GU238153
GU237913
GU237665
Stellaria media Netherlands
CBS 500.91; PD
83/322
Phoma viburnicola B
GU238154
GU237871
GU237666
Ilex aquifolium Netherlands
CBS 523.73; PD
69/800
Phoma viburnicola B
GU238155
GU237879
GU237667
Viburnum cassioides Netherlands
CBS 383.68Phoma xanthina B
GU238157
GU237855
GU237668
Delphinium sp.
Netherlands
PD 84/407
Phoma xanthina GU238158
GU237918
GU237669
Delphinium sp.
Netherlands
CBS 131.93; PD
69/140
Phoma zantedeschiae GU238159
FJ427084FJ427188Calla sp.
Netherlands
CBS 105.96; PD
74/230
Stagonosporopsis actaeae B
GU238165
GU237733
GU237670
Cimicifuga simplex Netherlands
CBS 106.96; PD
94/1318
Stagonosporopsis actaeae T
GU238166
GU237734
GU237671
Actaea spicata Netherlands
CBS 176.93; PD
86/547
Stagonosporopsis ajacis GU238167
GU237790
GU237672
Delphinium sp.
Netherlands
CBS 177.93; PD
90/115
Stagonosporopsis ajacis T
GU238168
GU237791
GU237673
Delphinium sp.
Kenya
CBS 101.80; PD
75/909; IMI 386090
Stagonosporopsis andigena B
GU238169
GU237714
GU237674
Solanum sp.
Peru
CBS 269.80; PD
75/914
Stagonosporopsis andigena GU238170
GU237817
GU237675
Solanum sp.
Peru
CBS 102636; PD
73/1409
Stagonosporopsis artemisiicola B
GU238171
GU237728
GU237676
Artemisia dracunculus France
CBS 178.25; MUCL
9915
Stagonosporopsis astragali B
GU238172
GU237792
GU237677
Astragalus sp.
Unknown
CBS 248.90Stagonosporopsis caricae GU238175
GU237807
GU237680
Carica papaya Chile
PD 06/03082531
Stagonosporopsis caricae GU238176
GU237912
GU237681
Carica papaya Brazil
CBS 282.76Stagonosporopsis caricae GU238177
GU237821
GU237682
Brassica sp.
Indonesia
CBS 713.85; ATCC
76027; PD 83/826
Stagonosporopsis crystalliniformis T
GU238178
GU237903
GU237683
Lycopersicon esculentum Colombia
CBS 771.85; IMI
386091; PD 85/772
Stagonosporopsis crystalliniformis GU238179
GU237906
GU237684
Solanum tuberosum Colombia
CBS 109171; PD
91/310; PDDCC 272
Stagonosporopsis cucurbitacearum GU238180
GU237922
GU237685
Cucurbita sp.
Netherlands
CBS 133.96; PD
79/127
Stagonosporopsis cucurbitacearum GU238181
GU237780
GU237686
Cucurbita sp.
New Zealand
CBS 631.68; PD
68/147
Stagonosporopsis dennisii B
GU238182
GU237899
GU237687
Solidago floribunda Netherlands
CBS 135.96; IMI
19337; PD 95/4756
Stagonosporopsis dennisii GU238183
GU237782
GU237688
Solidago canadensis Canada
CBS 320.90; PD
86/932
Stagonosporopsis dorenboschii B
GU238184
GU237830
GU237689
Physostegia virginiana Netherlands
CBS 426.90; IMI
386093; PD 86/551
Stagonosporopsis dorenboschii T
GU238185
GU237862
GU237690
Physostegia virginiana Netherlands
CBS 109182; PD
74/231
Stagonosporopsis heliopsidis B
GU238186
GU237747
GU237691
Heliopsis patula Netherlands
PD 95/6189; DAOM 221138
Stagonosporopsis heliopsidis GU238187
GU237924
GU237692
Ambrosia artemisiifolia Canada
CBS 104.42Stagonosporopsis hortensis B
GU238198
GU237730
GU237703
Unknown
Netherlands
CBS 572.85; PD
79/269
Stagonosporopsis hortensis B
GU238199
GU237893
GU237704
Phaseolus vulgaris Netherlands
CBS 425.90; PD
81/520
Stagonosporopsis ligulicola var. inoxydabilis T
GU238188
GU237861
GU237693
Chrysanthemum parthenii Netherlands
PD 85/259
Stagonosporopsis ligulicola var. inoxydabilis GU238189
GU237920
GU237694
Matricaria sp.
Netherlands
CBS 500.63; MUCL
8090
Stagonosporopsis ligulicola var. ligulicola B
GU238190
GU237872
GU237695
Chrysanthemum indicum Germany
CBS 137.96; PD
84/75
Stagonosporopsis ligulicola var. ligulicola B
GU238191
GU237783
GU237696
Chrysanthemum indicum Netherlands
CBS 562.81; PDDCC
6884
Stagonosporopsis loticola T
GU238192
GU237890
GU237697
Lotus pedunculatus New Zealand
CBS 628.97; PD
79/72; PDDCC 3870
Stagonosporopsis loticola GU238193
GU237896
GU237698
Lotus tenuis New Zealand
CBS 101494; PD
98/5247
Stagonosporopsis lupini B
GU238194
GU237724
GU237699
Lupinus albus U.K.
CBS 375.84; PD
80/1250
Stagonosporopsis lupini GU238195
GU237844
GU237700
Lupinus mutabilis Peru
CBS 634.92; IMI
193307
Stagonosporopsis oculo-hominis T
GU238196
GU237901
GU237701
Human
U.S.A.
CBS 109180; PD
79/175
Stagonosporopsis rudbeckiae B
GU238197
GU237745
GU237702
Rudbeckia bicolor Netherlands
CBS 379.91; PD
77/675
Stagonosporopsis trachelii B
GU238173
GU237850
GU237678
Campanula isophylla Netherlands
CBS 384.68Stagonosporopsis trachelii B
GU238174
GU237856
GU237679
Campanula isophylla Sweden
CBS 273.92; PD
76/1019
Stagonosporopsis valerianellae GU238200
GU237819
GU237705
Valerianella locusta Netherlands
CBS 329.67; PD
66/302
Stagonosporopsis valerianellae B
GU238201
GU237832
GU237706
Valerianella locusta var. oleracea Netherlands

ATCC: American Type Culture Collection, Virginia, U.S.A.; CBS:
Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; CECT:
Colección Española de Cultivos Tipo, Valencia University, Spain;
DAOM: Canadian Collection of Fungal Cultures, Ottawa, Canada; DSM: Deutsche
Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany;
HACC: Research Laboratory, Hindustan Antibiotics Ltd., Pimpri Poona, India;
IMI: International Mycological Institute, CABI-Bioscience, Egham, Bakeham
Lane, U.K.; LEV: Plant Health and Diagnostic Station, Auckland, New Zealand;
MUCL: Mycotheque de l'Universite catholique de Louvain, Louvain-la-Neuve,
Belgium; PD: Plant Protection Service, Wageningen, the Netherlands; PDDCC:
Plant Diseases Division Culture Collection, Auckland, New Zealand; PREM:
National Collection of Fungi: Culture Collection, Pretoria, South Africa; VKM:
All-Russian Collection of Microorganisms, Pushchino, Russia; VPRI: Victorian
Plant Disease Herbarium, Victoria, Australia.

T: Ex-type strain; B: Reference strain according to Boerema et al. (2004 ).

Obtained consensus sequences were assembled and aligned using the same
BioNumerics software and adjusted manually where necessary. As SSU was highly
conserved in deeper node phylogenies, revealing almost no phylogenetic
informative nuclear polymorphisms, and as ITS and TUB proved to be unalignable
due to a high level of polymorphism if all taxa studied would be taken into
account, it was decided to conduct two separate analyses. The first analysis
comprised SSU and LSU loci, and was applied to 76 taxa of which most species
included belonged to genera that were often confused with Phoma (Sutton 1980 ,
De Gruyter et al. 2009). A second set of analyses was conducted on 274 taxa, and
focussed on the species that had proven to be related to the
Didymellaceae from preliminary studies.
Each of the phylogenetic analyses consisted of two methods: Bayesian
Interference (BI) and Maximum Likelihood (ML). For BI analysis, the nucleotide
substitution models were determined for each locus separately with MrModeltest
v. 2.2 (Nylander 2004 ).
According to this software, the General Time Reversible substitution was
determined to be the best model for SSU, TUB and LSU in both data sets, with
inverse gamma rates and dirichlet base frequencies (GTR + I + G). For the ITS
dataset, the software suggested the Symmetrical Model as the best model for
substitution of nucleotides. Also in this locus, the inverse gamma rates and
dirichlet base frequencies were used (SYM + I + G). The actual Bayesian
calculations were performed in MrBayes v. 3.1.2
(Huelsenbeck & Ronquist
2001
). One tree was saved per 100 generations, and the run was
automatically ended when the standard deviation of split frequencies was below
0.01. The temperature value of the Bayesian run was set at 0.2. To avoid
suboptimal trees being taking into account for the consensus tree, a burn-in
of 25 % of the saved trees was used. The resulting “50 % majority rule
consensus” trees were visualised with TreeView v. 1.6.6
(Page 1996 (link)).
A second measure of branch support was obtained by conducting a ML analysis
using RAxML software (Stamatakis et
al.
2005
) through the CIPRES Website
(www.phylo.org).
The same partitions were used as in the BI analyses, but because RAxML
implements only the GTR substitution model, the symmetrical model for the ITS
partition was waived. The robustness of trees in the ML analyses was evaluated
by bootstrapping the datasets. The number of bootstrap replicates was
automatically determined by the RAxML software
(Stamatakis et al. 2008). The obtained trees in both analyses are lodged with
TreeBASE
(www.treebase.org).
Publication 2010
Concentrations of TCE, cis-DCE and VC were measured using 8610GC instrument with purge-trap system (SRI, USA), photoionization detector and MXT-VOL stationary column. The purge-trap autosampler was equipped with carbon-sieve trap and Tenax trap, allowing the detection of highly volatile VC. 50 μL of water sample was injected in 5 mL deionized water in glass tubes, and loaded into the 10-port autosampler. The GC was programmed at 40°C for 6 minutes, then ramped to 60°C in 2 minutes, held at 60°C for 10 minutes. Hydrocarbon gases (methane, ethene, ethane and acetylene) in headspace of electrolytic cell were analyzed through a Model 310 GC (SRI, USA) with flame ionization detector and Haysep-T column. 100 μL of headspace gas was sampled and injected from an on-column port. The temperature program applied was: heat column from 40 to 140°C at a rate of 15°C min−1, hold 140°C for 1 minute, and cool to 40°C at a rate of 20°C min−1. Chloride ion concentration was analyzed by Dionex DX-120 ion chromatograph. After each experiment, an aliquot 0.2 to 0.5 ml of supernatant was transferred into 5 mL vials which had been pre-filled with de-ionized water (> 18 M3), then filtered by 0.45μm pore size filter paper prior to final analysis. pH, conductivity and oxidation-reduction potential (ORP) of the electrolyte were measured by pH meter, conductivity meter and ORP meter with corresponding microprobes (Microelectro, USA). The microprobes allow the measurement on these parameters using small amount of liquid (≈0.2 mL).
Publication 2011
Acetylene ARID1A protein, human Carbon Cells Chlorides Chromatography Electric Conductivity Electrolytes Ethane ethylene Flame Ionization Hydrocarbons Methane Oxidation-Reduction Strains tenax
BVOC emissions were sampled 8 times in 2010 and 4 times in 2012 during the growing season in the same area as used for vegetation analysis. Samplings were made using transparent polycarbonate chambers (thickness 1.5 mm, 220 × 220 mm, height 200 mm; Vink Finland, Kerava, Finland) placed on an aluminum collar permanently installed in each plot in 1999. Collar grooves were filled with water before placing the chamber to create an airtight headspace inside the chamber. Before the 30-min-long sampling, the chamber was flushed for 10 min with a flow rate of 1000 ml min−1 to replace the headspace with filtered air (Ortega & Helmig, 2008 (link)). During the sampling, the air was circulated through the chambers using battery-operated pumps (12V; Rietschle Thomas, Puchheim, Germany) at 200 ml min−1 for both inflow and outflow and the chambers were equipped with fans to ensure well-mixed headspace. Incoming air was purified using a charcoal filter (Wilkerson F03-C2-100, Mexico) to remove particles and volatile impurities and a MnO2 scrubber (Ozone Scrubber Cartridge, Environnement S.A. France) to remove ozone (Fig. S1).
The BVOCs released from the plots were trapped in stainless steel adsorbent tubes (150 mg Tenax TA, 200 mg Carbograph 1TD, Markes International Limited, Llantrisant, UK). After the collection, the tubes were sealed with Teflon-coated brass caps and stored at 5 °C until analysis.
Temperature and relative humidity inside the chamber were recorded (Hygrochron DS 1923-F5 iButton, Maxim Integrated Products Inc., CA, USA) once a minute during the sampling. PAR was recorded every 10 s using PAR sensors (S-LIA-M003, Onset Computer Corporation, Bourne, MA, USA) coupled to a Hobo Micro Station (Onset Computer Corporation); see Table S1 for chamber temperature and PAR during measurements.
Publication 2015
Aluminum brass Charcoal Humidity Ozone polycarbonate Stainless Steel Teflon tenax

Most recents protocols related to «Tenax»

Several reviews and original articles in the Scopus, PubMed and ScienceDirect databases were examined. The articles had a publication period up to July 2023. We used the "Advanced search" extension and the following keywords: "Trichomonas tenax" and "periodontal diseases". Only full texts were included.
Publication 2024
Not available on PMC !
Collected VOCs were analysed by thermal desorption gas chromatography coupled to mass spectrometry (TD-GC-MS) as described elsewhere (Marco and Grimalt 2015) (link). Briefly, VOCs were thermo-desorbed at 300°C for 5 min with a desorption flow of 40 mL min -1 and reconcentrated in a general purpose hydrophobic cold trap at -20°C (U-T2GPH-2S, Markes International). Then, an uncoated and deactivated fused-silica transfer line carried the analytes within a split ratio of 1:5 into a Gas Chromatograph 7890 (GC; Agilent Technologies Inc., Santa Clara, CA, USA) coupled to a mass spectrometer (MS; 5975C Inert XL MSD, Agilent) with an electron impact (EI) ionization source. GC was fitted with a DB-5 MS UI capillary column (60 m × 320 μm × 1 μm; Agilent J&W GC Columns) where compounds were separated at a helium flow rate of 1 mL min -1 . The oven was programmed to start at 40°C (holding for 10 min), rising to 150°C at 5°C min -1 , subsequently to 210°C at 15°C min -1 and finishing with 10 min of holding time. MS spectra were obtained at 70 eV, being 230ºC and 150°C the temperatures of the ion source and the quadrupole, respectively. EI detector operated in full scan mode and acquired data over a mass range from 30 to 380 a.m.u.
The identification of VOCs was accomplished based on retention times, the ratios of quantifier and qualifier ions and the mass spectra from target compounds in standard solutions. Quantification of the target compounds was carried out by the external standard method. In order to determine linear range and limits of detection, three different calibration solutions with concentrations between 0.25 and 200 μg/mL were prepared in methanol (Merck, Darmstadt, Germany) from the following commercial standards: 8260B MegaMix Calibration Mix (2000 μg mL -1 in methanol; Restek, Bellefonte, PA, USA), Cannabis Terpenes Standard #1 (2500 μg mL -1 in isopropanol, Restek), 8260B Acetates Mix (2000 μg mL -1 in methanol; Restek), FIA Paraffin Standard (Accustandard Inc., New Haven, CT, USA). Each calibration solution was injected (1 μL) into conditioned cartridges through a calibration Solution Ring (CSLRTM, Markes International Ltd, Llantrisant, UK) with N 2 as carrier gas (flow rate of 50 mL min -1 ) and then was analyzed by TD-GC-MS. The coefficients of determination (R 2 ) of the calibration curves for target compounds were always >0.99. The instrumental limits of detection (LOD) were determined by multiplying the standard deviation of the response of the calibration curve by 3 and subsequently dividing the result by the slope of the same curve. Method detection limits (MDLs) were obtained by dividing LOD by the sampling volume of each sample. Overall, the MDLs ranged from 0.003 to 0.08 μg m -3 . To enable comparable and statistically significant analysis, VOC species were chosen if their calculated concentrations in ambient air exceeded the MDLs in more than 75% of the ground samples. Consequently, the final dataset comprised 40 VOCs from various chemical groups. The selected compounds were also found in over 75% of the balloon samples, with the exceptions of ethyl methacrylate and naphthalene, present at 63% of the samples, isopropylbenzene and n-decane at 50%, n-butylbenzene at 38%, and n-octane and isopropyl acetate at only 25%.
Publication 2024
Not available on PMC !
All studies involving individuals diagnosed with periodontal disease, with or without concomitant systemic disorders, were included. There were no geographical restrictions on selection. Other inclusion criteria included considering articles that contained information about the year of publication, country, reported detection methods, total number of samples tested, and the percentage of patients infected with the flagellate microorganism.
Duplicate articles from all three databases were excluded. In addition, articles were excluded if they were not relevant to the aims of the study, such as those involving animal studies or analyzing Trichomonas tenax in a site other than the oral cavity.
Publication 2024
Rhizosphere volatiles were trapped through passive diffusion by placing one Tenax® (Markes International, Llantrisant, United Kingdom) trap containing 200 mg Tenax/tube type TA 60/80trap inside a metal holder in each pot, reaching an approximate depth of 5 cm. Metal holders were stainless steel cylinders with perforations allowing the air entrance while protecting the trap from soil contamination. Tenax traps were placed before the onset of the herbivory stress for 24 h (T0). Upon the leaf-herbivory stress induced by S. exigua, new Tenax traps were placed in the same pots where T0 was measured. Traps were placed 24 h after the onset of the herbivory stress for a 24 h period, thus collecting the volatiles during the initial 24–48 h herbivory stress induction period (T1). Traps were tightly closed and stored at room temperature until measurement. Before utilization, Tenax traps were preconditioned by heating at 300°C for 45 min under helium flow (5 l/min).
Full details of Tenax measurement regarding thermal desorption, GC/Q-TOF measuring conditions, calibration, data analysis, and compound identification are described by Lee Díaz et al. (2022 (link)). Briefly, volatiles was thermo-desorbed from Tenax traps at 240°C for 8 min and then transferred to an ultra-inter column (122–5532 UI, Agilent Technologies, Inc., Santa Clara, CA, USA) of the GC/Q-TOF (model Agilent 7890B GC and the Agilent 7200A Q-TOF). An n-alkane (C8–C20) standard solution was spiked at the beginning of the run for calibration. Mass spectra of compounds were acquired in full-scan-mode and GC/Q-TOF raw data was translated to .cdf format and analyzed with MzMine v2.53 (Pluskal et al. 2010 , 2020 ) for mass feature detection and peak intensity quantification. Parameters used for GC-MS peak intensity tables (Du et al. 2020 ) are available in Table S3 (Supporting Information). Peak intensity tables were used in combination with chromatogram data (Mass Hunter Qualitative v10, Agilent Technologies) for manual identification of volatile compounds comparing the mass spectrum of target compounds with the NIST 2020 database (V2.20, National Institute of Standards and Technology, USA).
Publication 2024
A flow of 0.4 NL/min was diverted from the exposure chamber and forced through a Tenax TA 60/80 tube. The Tenax tubes were thermally desorbed and analyzed using a multimode inlet (OPTIC-4, GL Sciences, Eindhoven, The Netherlands) coupled to a GC–MS (an Agilent Technologies 7890A GC-system in combination with an Agilent Technologies 5975 inert XL MSD, Santa Clara, US). The injector was flash heated from 10 to 250 °C at a flow rate of 8 mL He/min. After a desorbing time of 90 s the column flow was reduced to 1.5 mL/min.
Publication 2024

Top products related to «Tenax»

Sourced in United States, Germany
Tenax TA is a porous polymer adsorbent material used in various analytical techniques. It is designed to trap and concentrate volatile organic compounds (VOCs) from gas samples. Tenax TA provides a high surface area and good thermal stability, making it suitable for a wide range of applications in analytical chemistry and environmental monitoring.
Sourced in United Kingdom
Tenax TA is an adsorbent material designed for the collection and analysis of volatile organic compounds (VOCs) in air, water, and soil samples. It is a porous polymer with a high surface area, providing efficient trapping and subsequent desorption of a wide range of organic compounds.
Sourced in United States
Tenax TA is an adsorbent material commonly used in analytical techniques for trapping and concentrating volatile organic compounds (VOCs) from various sample matrices. It is a porous polymer material with a high surface area, providing efficient adsorption capabilities. Tenax TA can be used in a variety of applications, including environmental monitoring, indoor air quality assessments, and industrial process analysis.
Sourced in Australia, United Kingdom, United States
LabChart 7 Pro is a powerful data acquisition and analysis software for life science research. It provides a flexible and intuitive interface to record, visualize, and analyze physiological data from various instruments.
Sourced in United States
Tenax TA is a solid adsorbent material used for the collection and analysis of volatile organic compounds (VOCs) in air samples. It is a porous polymer with a high surface area, which enables it to effectively trap and concentrate VOCs for subsequent analytical testing.
Sourced in United States, Canada
The DAM50 is a differential amplifier that amplifies the difference between two input signals. It features a gain range of 0.1 to 5000 and a bandwidth of 0.1 Hz to 100 kHz. The DAM50 is designed to provide precise amplification of small, differential signals.
Sourced in United Kingdom
Carbopack B is a porous polymer-based adsorbent material used in gas chromatography and thermal desorption applications. It is specifically designed for the collection and analysis of volatile organic compounds (VOCs) and other trace-level analytes in air samples.
Sourced in United States
The TurboMatrix 350 is a thermal desorption unit designed for the analysis of volatile and semi-volatile organic compounds. It is capable of thermally desorbing samples from a variety of media, including air, water, and soil, and transferring the desorbed compounds to a gas chromatography system for further analysis.
Sourced in Australia, United States, United Kingdom
The PowerLab 4/30 is a data acquisition system designed for laboratory research. It features four input channels for recording physiological signals such as biopotentials, pressure, and force. The device digitizes and processes the incoming signals, enabling researchers to analyze and display the data on a connected computer.
Sourced in United States, United Kingdom
The ATD 400 is a thermal desorption instrument designed for the analysis of volatile organic compounds (VOCs) and semi-volatile organic compounds (SVOCs) in various sample matrices. It provides automated thermal desorption and transfer of analytes to a gas chromatography (GC) or liquid chromatography (LC) system for separation and detection.

More about "Tenax"

Tenax is a versatile synthetic polymer material with a wide range of applications.
This high-performance thermoplastic is known for its exceptional thermal and chemical stability, as well as its remarkable abrasion resistance.
Tenax products are commonly used as sorbents, membranes, and reinforcing agents in various industries, including environmental monitoring, gas chromatography, and composite manufacturing.
Researchers can leverage advanced AI-driven comparison tools, like those provided by PubCompare.ai, to identify the optimal Tenax products for their specific needs.
These intelligent tools help maximize the reproducibility and accuracy of research studies by enabling researchers to locate the best protocols from literature, preprints, and patents.
Tenax TA, a widely used Tenax product, is a versatile adsorbent material with a high surface area and strong affinity for volatile organic compounds (VOCs).
It is commonly employed in applications such as thermal desorption (ATD 400) and gas chromatography (LabChart 7 Pro software, TurboMatrix 350).
The DAM50 differential amplifier is another useful tool that can be used in conjunction with Tenax-based systems to enhance signal detection and analysis.
Carbopack B, another member of the Tenax family, is a graphitized carbon black adsorbent material often used in environmental monitoring and air quality assessment applications.
The PowerLab 4/30 is a data acquisition system that can be utilized to capture and analyze data from Tenax-based studies.
By leveraging the insights and capabilities offered by these Tenax-related products and software, researchers can maximize the efficiency, reproducibility, and accuracy of their investigations, leading to more robust and reliable research outcomes.