Wild-type Swiss-Webster mice (Taconic Farms, Inc.) were used for embryonic BBB functionality assays and expression profiles. Homozygous Tie2-GFP transgenic mice (Jackson laboratory, strain 003658) were used for BBB transcriptional profiling. Mfsd2a null mice21 (link) (MMRRC strain 032467-UCD) were maintained on C57Bl/6;129SVE mixed background and used for testing the involvement of MSFD2A in barrier-genesis. All animals were treated according to institutional and NIH guidelines approved by IACUC at Harvard Medical School.Deeply anaesthetized pregnant mice were used. Minimal volume of 10-kDa Dextran-Tetramethylrhodamine, Lysine Fixable (D3312 Invitrogen) was injected into the embryonic liver, while keeping the embryo connected to the maternal blood circulation through the umbilical cord. After three minutes of tracer circulation, embryonic heads were fixed by immersion in 4% paraformaldehyde (PFA) overnight at 4°C, cryopreserved in 30% sucrose and frozen in TissueTek OCT (Sakura). 12 µm sections were then collected and post fixed in 4% PFA at room temperature (RT) for 15 min, washed in PBS and co-stained with either α-PECAM antibody or with Isolectin B4 to visualize blood vessels (see Method section for details). P90 HRP injection and E17.5 cortex capillaries TEM imaging was done as previously described2 (link).
>
Chemicals & Drugs
>
Organic Chemical
>
Tetramethylrhodamine
Tetramethylrhodamine
Tetramethylrhodamine is a fluorescent dye commonly used in biological research.
It is a derivative of rhodamine, a family of red-fluorescent dyes with excitation and emission wavelengths suitable for a variety of applications.
Tetramethylrhodamine is often employed as a labeling reagent for proteins, nucleic acids, and other biomolecules, allowing visualization and tracking in cellular and molecular studies.
Its bright fluorescence and photostability make it a valuable tool for flow cytometry, microscopy, and high-throughput screening.
Researchers can optimize the use of tetramethylrhodamine through AI-driven protocol comparisons on PubCompare.ai, locating the most reproducible and accurate procedures from literature, preprints, and patents to identify the optimal products and workflows.
It is a derivative of rhodamine, a family of red-fluorescent dyes with excitation and emission wavelengths suitable for a variety of applications.
Tetramethylrhodamine is often employed as a labeling reagent for proteins, nucleic acids, and other biomolecules, allowing visualization and tracking in cellular and molecular studies.
Its bright fluorescence and photostability make it a valuable tool for flow cytometry, microscopy, and high-throughput screening.
Researchers can optimize the use of tetramethylrhodamine through AI-driven protocol comparisons on PubCompare.ai, locating the most reproducible and accurate procedures from literature, preprints, and patents to identify the optimal products and workflows.
Most cited protocols related to «Tetramethylrhodamine»
Animals
Biological Assay
Blood Vessel
Capillaries
Cortex, Cerebral
dextran tetramethylrhodamine
Embryo
Freezing
Head
Homozygote
Immunoglobulins
Institutional Animal Care and Use Committees
Isolectins
Liver
Lysine
Mice, Laboratory
Mice, Transgenic
Mouse, Swiss
paraform
Strains
Submersion
Sucrose
Transcription, Genetic
Umbilical Cord
CD45.2 C57BL/6 (B6) and CD45.1 B6 mice were from the National Cancer Institute or a colony maintained at the University of California, San Francisco. Mice lacking Sphk2 and carrying LoxP-flanked Sphk1 were on a B6/129 mixed background (Pappu et al., 2007 (link)). Lyve-1 Cre knockin mice on a B6/129 mixed background were generated as described in Fig. S1. Lyve-1 Cre+ Sphk1f/− or f/f Sphk2−/− mice were generated by intercrossing. Control mice were usually littermates and were always from the same intercross and carried at least one wild-type Sphk allele. Rosa26-YFP reporter mice (Srinivas et al., 2001 (link)) were provided by N. Killeen (University of California, San Francisco, San Francisco, CA). To generate BM chimeras, recipient CD45.2+ mice were lethally irradiated with 1,300 rads in two doses separated by 3 h and injected with 5 × 106 wild-type BM cells prepared from a CD45.1+ donor. In some experiments, ∼2 × 107 cells/ml were labeled with 3.3 µM CFSE (Invitrogen) or 10 µM 5-(and-6)-(((4-chloromethyl)benzoyl)amino)tetramethylrhodamine (CMTMR; Invitrogen) in RPMI 1640 containing 2% FCS for 20 min at 37°C, and were then washed by spinning through a layer of FCS. Labeled cells were resuspended at ∼2 × 107 cells/ml, and were treated with 10 ng/ml OB or PTX at 37°C for 10 min, washed twice in warm RPMI 1640 with 2% FCS and 10 mM Hepes, and transferred to recipient mice. Lymph collection was performed as previously described (Matloubian et al., 2004 (link)). In brief, under a stereomicroscope, lymph was drawn from the cysterna chyli using a fine borosilicate glass microcapillary pipette (Sutter Instrument Co.). Cell numbers determined by flow cytometry were divided by the volume of collected lymph to determine the concentration. Protocols were approved by the Institutional Animal Care and Use Committee of the University of California, San Francisco.
(((4-chloromethyl)benzoyl)amino)-tetramethylrhodamine
5-(6)-carboxyfluorescein diacetate succinimidyl ester
Alleles
Cells
Chimera
Flow Cytometry
HEPES
Institutional Animal Care and Use Committees
Lymph
Mice, 129 Strain
Mus
RRAD protein, human
sphingosine kinase 2, human
tetramethylrhodamine
Tissue Donors
Protocol full text hidden due to copyright restrictions
Open the protocol to access the free full text link
Actins
Biological Assay
Bos taurus
Buffers
Cardiac Arrest
Cell Motility Assays
Cells
Heart
Homo sapiens
Oxygen
Phalloidine
Protein Isoforms
Proteins
Regeneration
tetramethylrhodamine
Utrophin
LTR stainings were performed by incubating dissected L3 stage fat bodies in 100 nM LTR (Invitrogen) for 5 min. For immunofluorescent labeling, bisected larvae were fixed overnight in 3.7% paraformaldehyde at 4°C and blocked in PBS with 0.1% Triton X-100, 0.05% sodium deoxycholate, and 3% goat serum for 3 h followed by overnight incubations with primary and secondary antibodies in blocking buffer at 4°C (Juhász et al., 2008 (link); Pircs et al., 2012 (link)). We used chicken anti-GFP (1:1,500; Invitrogen), rabbit anti-Atg5 (1:100; Sigma-Aldrich), rabbit anti-Atg8a (1:500; provided by K. Kohler, Eidgenössische Technische Hochschule Zürich, Zurich, Switzerland; Barth et al., 2011 (link)), rabbit anti-p62 (1:2,000; Pircs et al., 2012 (link)), rabbit anti–active caspase 3 (1:300; Cell Signaling Technology), rat anti-Atg8a (1:300), and rat anti-Syx17 (1:300; this study) primary and Alexa Fluor 488 anti–chicken, Alexa Fluor 488 anti–rabbit, Alexa Fluor 568 anti–rat, and Alexa Fluor 647 anti–rabbit (all 1:1,500; Invitrogen) secondary antibodies. For TUNEL stainings, adult heads and half-thoraces were fixed in 3.7% paraformaldehyde overnight at 4°C and embedded into paraffin following standard protocols. Sections were processed using In Situ Cell Death Detection Kit, tetramethylrhodamine red (Roche) with SYTOX green DNA stain (Juhász et al., 2007 (link)). Images were obtained on a microscope (Axio Imager.M2; Carl Zeiss) equipped with a grid confocal unit (ApoTome.2; Carl Zeiss) at room temperature, using Plan-Neofluar 20×, 0.5 NA (air), 40×, 0.75 NA (air), and 100×, 1.3 NA (oil) objectives, a camera (AxioCam MRm; Carl Zeiss), and AxioVision software (Carl Zeiss). Microscope settings were identical for experiments of the same kind. Primary images were processed in AxioVision and Photoshop (Adobe) to produce final figures. Note that Alexa Fluor 568 or 647 channels are pseudocolored magenta.
Adult
alexa 568
alexa fluor 488
Alexa Fluor 647
Antibodies
Antibodies, Blocking
Buffers
Caspase 3
Cell Death
Chest
Chickens
Deoxycholic Acid, Monosodium Salt
Fat Body
Fluorescent Antibody Technique
Goat
Head
In Situ Nick-End Labeling
Larva
Microscopy
Paraffin Embedding
paraform
Rabbits
Rosaniline Dyes
Serum
Staining
Stains
SYTOX Green
tetramethylrhodamine
Triton X-100
Animals
Antibodies, Anti-Idiotypic
Brain
Buffers
CA1 Pyramidal Cell Area
Cell Death
Cells
Endopeptidase K
Enzymes
Fluoro-Jade B
In Situ Nick-End Labeling
Laser Microscopy
Microscopy, Confocal
Monoclonal Antibodies
Mus
Neurons
Normal Saline
Nucleotides
paraform
Perfusion
Phosphates
Seahorses
Sucrose
tetramethylrhodamine
Transferase
Triton X-100
Tromethamine
Most recents protocols related to «Tetramethylrhodamine»
Cells were seeded in tissue-culture treated 24-well plates and allowed to grow until they reached 80% confluency. Mitochondrial membrane potential was estimated by Tetramethylrhodamine, Ethyl Ester, Perchlorate (TMRE) (T669, Invitrogen), by following the manufacturer’s indications. TMRE is a fluorogenic cationic dye which is selectively targeted to active mitochondria. Cells were washed twice with warm DPBS, calcium, magnesium (14040133, Invitrogen) and incubated with 500 μL of 0.5 μM TMRE probe diluted in DPBS, calcium, magnesium for 30 min at 37°C protected from the light. An unstained well was used as blank. Cells were washed with DPBS, calcium, magnesium twice and maintained in 300 μL DPBS, calcium, magnesium. TMRE fluorescence (λex = 548 nm, λem = 574 nm) was measured in a SpectraMax M2/M2e microplate reader (Molecular Devices). TMRE probe fluorescence was normalized with the total protein content of each well, which was determined by the Micro BCA Protein Assay Kit.
A mitochondrial membrane potential assay kit (BioVision) was used according to the manufacturer’s instructions. Total cells were incubated with the fluorescent tetramethylrhodamine, ethyl (TMRE, 200 nM) dye for 20 min at 37 °C and 5% CO2. For the negative control, FCCP (carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazon, 20 μM) was added into one well and incubated at 37 °C for 10 min prior to TMRE addition. Following incubation, the stained cells were harvested and gently washed with the assay buffer. Fluorescence signal was measured at 549/575 nm of excitation/emission wavelengths using a Synergy H1 multi-mode microplate reader (BioTek). Two technical and biological replicates were performed for each sample.
Example 122
Tetramethylrhodamine formamidine 177. 5-Amino(tetramethyl)rhodamine 176 (0.100 g, 0.254 mmol), (chloromethylene)dimethylimminium chloride (0.155 g, 1.27 mmol), and DIEA (0.22 mL, 1.26 mmol) were stirred in 4 mL of DMF for 16 h. The reaction mixture was evaporated and the crude product was purified on a silica gel column (1.5×25 cm bed, patched in MeCN/H2O/AcOH (8:2:2.5)), eluant: MeCN/H2O/AcOH (8:2:2.5) to give amidine 177 (0.050 g, 48%) as a red solid.
Amidines
Anabolism
Chlorides
formamidine
N,N-diisopropylethylamine
Silica Gel
tetramethylrhodamine
To measure mitochondrial superoxide and the mitochondrial membrane potential state, cells were labelled with 5 μM MitoSOX Red mitochondrial superoxide indicator reagent (ThermoFisher) or with 100 nM TMRM (ThermoFisher) and were incubated for 30 min at 37 ºC. Cells then were washed with PBS prior to cell surface staining as described above and analyzed by for flow cytometry.
TMRM (#T668, Thermo Fisher Scientific) intensity (excitation/emission, 548/574 nm) was measured according to the manufacturer’s instructions Briefly, cells were added with staining solution at a final concentration of 100 nM and incubated for 30 min at 37 °C. After washing with PBS, the fluorescence was measured using SpectraMax i3. Results were normalized to the number of cells.
Top products related to «Tetramethylrhodamine»
Sourced in United States, Germany, Japan, United Kingdom, China, Italy, Sao Tome and Principe, France, Macao, Canada, Switzerland, Spain, Australia, Denmark, India, Poland, Israel, Belgium, Sweden, Ireland, Netherlands, Panama, Brazil, Portugal, Czechia, Puerto Rico, Austria, Hong Kong, Singapore
DAPI is a fluorescent dye that binds strongly to adenine-thymine (A-T) rich regions in DNA. It is commonly used as a nuclear counterstain in fluorescence microscopy to visualize and locate cell nuclei.
Sourced in United States, China, United Kingdom, Germany, Japan, Canada, Australia, Italy, Switzerland, France, Spain
MitoSOX Red is a fluorogenic dye designed to measure superoxide in the mitochondria of live cells. It is readily oxidized by superoxide but not by other reactive oxygen species. The oxidized product is highly fluorescent, allowing for the detection and quantification of mitochondrial superoxide.
Sourced in United States, Germany, United Kingdom, China, Australia, Japan, Canada, Italy
MitraTracker Green is a fluorescent dye used to label and monitor mitochondria in live cells. It passively diffuses across the cell membrane and accumulates in active mitochondria. The dye exhibits enhanced fluorescence upon binding to the mitochondrial membrane potential.
Sourced in United States, Germany, United Kingdom
Phalloidin-tetramethylrhodamine B isothiocyanate is a fluorescent dye that binds specifically to F-actin, a component of the cytoskeleton in eukaryotic cells. It is used in microscopy and flow cytometry applications to visualize and quantify actin filaments.
Sourced in United States, Germany, United Kingdom, Japan, China, France, Canada, Spain, Belgium, Italy, Australia, Austria, Denmark, Netherlands, Switzerland, Ireland, New Zealand, Portugal, Brazil, Argentina, Singapore, Poland, Ukraine, Macao, Thailand, Finland, Lithuania, Sweden
Hoechst 33342 is a fluorescent dye that binds to DNA. It is commonly used in various applications, such as cell staining and flow cytometry, to identify and analyze cell populations.
Sourced in United States, Germany, United Kingdom, Italy, China, Japan, France, Canada, Sao Tome and Principe, Switzerland, Macao, Poland, Spain, Australia, India, Belgium, Israel, Sweden, Ireland, Denmark, Brazil, Portugal, Panama, Netherlands, Hungary, Czechia, Austria, Norway, Slovakia, Singapore, Argentina, Mexico, Senegal
Triton X-100 is a non-ionic surfactant commonly used in various laboratory applications. It functions as a detergent and solubilizing agent, facilitating the solubilization and extraction of proteins and other biomolecules from biological samples.
Sourced in United States, China, United Kingdom, Germany, Australia, Japan, Canada, Italy, France, Switzerland, New Zealand, Brazil, Belgium, India, Spain, Israel, Austria, Poland, Ireland, Sweden, Macao, Netherlands, Denmark, Cameroon, Singapore, Portugal, Argentina, Holy See (Vatican City State), Morocco, Uruguay, Mexico, Thailand, Sao Tome and Principe, Hungary, Panama, Hong Kong, Norway, United Arab Emirates, Czechia, Russian Federation, Chile, Moldova, Republic of, Gabon, Palestine, State of, Saudi Arabia, Senegal
Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
Sourced in United States, China, United Kingdom, Germany, Japan, Italy, France, Singapore, Israel
MitoSOX is a fluorogenic dye that can be used to detect superoxide (O2-) in the mitochondria of live cells. It is a highly selective indicator of superoxide in the mitochondria.
Sourced in United States, Germany, United Kingdom, Japan, Australia, France, Italy
MitoTracker Green FM is a fluorescent dye that specifically labels mitochondria in live cells. It passively diffuses across the plasma membrane and accumulates in active mitochondria. The dye exhibits bright green fluorescence upon binding to mitochondrial lipids.
Sourced in United States, Germany, United Kingdom, China, Italy, Japan, France, Sao Tome and Principe, Canada, Macao, Spain, Switzerland, Australia, India, Israel, Belgium, Poland, Sweden, Denmark, Ireland, Hungary, Netherlands, Czechia, Brazil, Austria, Singapore, Portugal, Panama, Chile, Senegal, Morocco, Slovenia, New Zealand, Finland, Thailand, Uruguay, Argentina, Saudi Arabia, Romania, Greece, Mexico
Bovine serum albumin (BSA) is a common laboratory reagent derived from bovine blood plasma. It is a protein that serves as a stabilizer and blocking agent in various biochemical and immunological applications. BSA is widely used to maintain the activity and solubility of enzymes, proteins, and other biomolecules in experimental settings.
More about "Tetramethylrhodamine"
Tetramethylrhodamine (TRITC) is a versatile fluorescent dye widely used in biological research.
It is a member of the rhodamine family, a group of red-emitting fluorophores with excitation and emission wavelengths suitable for various applications.
TRITC is commonly employed as a labeling reagent for proteins, nucleic acids, and other biomolecules, enabling their visualization and tracking in cellular and molecular studies.
Its bright fluorescence and photostability make TRITC a valuable tool for techniques such as flow cytometry, microscopy, and high-throughput screening.
Researchers can optimize the use of TRITC through AI-driven protocol comparisons on PubCompare.ai, a platform that helps identify the most reproducible and accurate procedures from literature, preprints, and patents.
When working with TRITC, researchers may also utilize other fluorescent dyes like DAPI (for nuclear staining), MitoSOX Red (for detecting mitochondrial superoxide), MitoTracker Green (for labeling mitochondria), and Phalloidin-TRITC (for actin filament staining).
Hoechst 33342 is another common nuclear stain that can be used in conjunction with TRITC.
The efficiency of TRITC labeling can be affected by factors such as the concentration of Triton X-100 (a detergent used for permeabilization) and the presence of serum proteins like Bovine Serum Albumin (BSA).
Careful optimization of these parameters, as well as the TRITC concentration itself, is crucial for obtaining reliable and consistent results.
By leveraging the insights and data-driven workflows available on PubCompare.ai, researchers can identify the optimal TRITC products and protocols, leading to more reproducible and accurate experiments in their studies.
It is a member of the rhodamine family, a group of red-emitting fluorophores with excitation and emission wavelengths suitable for various applications.
TRITC is commonly employed as a labeling reagent for proteins, nucleic acids, and other biomolecules, enabling their visualization and tracking in cellular and molecular studies.
Its bright fluorescence and photostability make TRITC a valuable tool for techniques such as flow cytometry, microscopy, and high-throughput screening.
Researchers can optimize the use of TRITC through AI-driven protocol comparisons on PubCompare.ai, a platform that helps identify the most reproducible and accurate procedures from literature, preprints, and patents.
When working with TRITC, researchers may also utilize other fluorescent dyes like DAPI (for nuclear staining), MitoSOX Red (for detecting mitochondrial superoxide), MitoTracker Green (for labeling mitochondria), and Phalloidin-TRITC (for actin filament staining).
Hoechst 33342 is another common nuclear stain that can be used in conjunction with TRITC.
The efficiency of TRITC labeling can be affected by factors such as the concentration of Triton X-100 (a detergent used for permeabilization) and the presence of serum proteins like Bovine Serum Albumin (BSA).
Careful optimization of these parameters, as well as the TRITC concentration itself, is crucial for obtaining reliable and consistent results.
By leveraging the insights and data-driven workflows available on PubCompare.ai, researchers can identify the optimal TRITC products and protocols, leading to more reproducible and accurate experiments in their studies.