Reagents were purchased and used without purification. Lithium aluminium hydride, reagent grade 95%; pyridinium chlorochromate, 98%; thionyl chloride; silica gel, 200–400 mesh, 60 Å for column chromatography; CDCl3 for NMR spectroscopy; and p-phenetidine, 98%, were supplied by Sigma Aldrich, Germany. Other reagents were provided by Chempur, Poland. TLC sheets Alugram SIL G/UV254 were obtained from Mecherey-Nagel, Germany.
NMR spectra were recorded using a Bruker ARX 300 MHz NMR spectrometer. Chemical shifts (δ in ppm) are given from internal solvent-CDCl3 7.26 ppm for 1H. Abbreviations used in NMR spectra: s—singlet, d—doublet, t—triplet, q—quartet, m—multiplet. IR spectra were recorded with a Thermo Scientific USA Nicolet iS50 FT-IR using the ATR technique. Elemental analyses were performed using a Carlo-Erba NA-1500 elemental analyzer. MS spectra were recorded with a Bruker Daltonic Compact using the ESI technique.
5-[(4-ethoxyanilino)methyl]-N-(4-fluorophenyl)-6-methyl-2-phenylpyrimidin-4-amine (2)
Preparation began with 0.5 g (1.62 mmol) of [4-(4-fluoroanilino)-6-methyl-2-phenylpyrimidin-5-yl]methanol (1), which was placed in a round-bottom flask equipped with a reflux condenser and dissolved in 10 mL of benzene. Then 1 mL of SOCl2 (1.64 g, 13.78 mmol) was added, and the reaction mixture was left at room temperature for 24 h. After this time, the excess of thionyl chloride and benzene was removed under vacuum, and the solid residue was washed with 2 mL of cold benzene. Next, the crude product was inserted into a round-bottom flask equipped with a magnetic stirrer and a reflux condenser and dissolved in 10 mL of THF. Then 0.69 g (5 mmol) of p-phenetidine was added, and the mixture was left for 48 h at room temperature. After this time, the mixture was poured into 50 mL of cold water and then extracted three times with 10 mL of CHCl3. The extracts were combined and dried with over 2 g of anhydrous MgSO4 for 30 min. The drying agent was filtered off, and the solvent was removed under vacuum. The crude product was purified by column chromatography on silica gel using 10% ethyl acetate in CHCl3 as eluent and crystallized from methanol. The purity of the product was monitored by TLC using chloroform/ethyl ether (3:1) as eluent.
Product characterization: yield 0.43 g, 62%; solid beige; melting point 163–164 °C; 1HNMR (300 MHz, CDCl3): δ (ppm) 1.42 (3H, t, CH3), 2.54 (3H, s, CH3), 3.60 (1H, broad, NH), 4.01 (2H, q, CH2), 4.27 (2H, s, CH2) 6.77–8.41 (13H, m, arom.), 8.77 (1H, s, NH); FT–IR (ATR, selected lines): ν (cm−1) 3295 (N–H); MS (ESI) m/z [M + H]+ 429.2036, calculated m/z 429.2085; analysis (%), calc./found: C 72.88/72.95, H 5.88/5.56, N 13.08/12.74.
4-(4-fluoroanilino)-6-methyl-2-phenylpyrimidine-5-carbaldehyde (4)
Prepration began with 0.5 g (1.62 mmol) of [4-(4-fluoroanilino)-6-methyl-2-phenylpyrimidin-5-yl]methanol (1), which was placed in a round-bottom flask equipped with a reflux condenser and dissolved in 10 mL of dichloromethane. Next, the suspension of 0.53 g of PCC (pyridinium chlorochromate; 2.5 mmol) in 10 mL dichloromethane was added. The resulting mixture was stirred at room temperature for 3 h. The reaction mixture was then diluted with 10 mL of diethyl ether, and the solution was decanted. The remaining black resinous polymer was washed with three 5 mL portions of diethyl ether. The extracts were combined, washed with 10 mL of 2% aqueous hydrochloric acid, and two 10 mL portions of water, then dried with over 5 g of MgSO4, filtered, and concentrated under vacuum. The crude product was purified by column chromatography on silica gel using chloroform as eluent, and then it was crystallized from methanol. The purity of the product was monitored by TLC using chloroform as eluent.
Product characterization: yield 0.34 g, 68%; yellow solid; melting point 184 °C; 1HNMR (300 MHz, CDCl3): δ (ppm) 2.86 (3H, s, CH3), 7.10–8.47 (9H, m, arom.), 10.43 (1H, s, CH), 11.11 (1H, s, NH); FT–IR (ATR, selected lines): ν (cm−1) 3116 (N–H), 1630 (C=O); MS (ESI) m/z [M + H]+ 308.1199, calculated m/z 308.1193; analysis (%), calc./found: C 70.35/70.74, H 4.59/4.29, N 13.67/13.36.
5-[(4-ethoxyphenyl)imino]methyl-N-(4-fluorophenyl)-6-methyl-2-phenylpyrimidin-4-amine (3)
Method A
The amount of 0.3 g of 4-(4-fluoroanilino)-6-methyl-2-phenylpyrimidine-5-carbaldehyde (3) (0.98 mmol) was placed in a round-bottom flask equipped with a reflux condenser and dissolved in 10 mL of THF. Then 0.2 g of p-phenetidine (1.5 mmol) was added. The reaction mixture was refluxed for 6 h, then it was cooled down and poured into 25 mL of 2% aqueous hydrochloric acid. The solution was extracted three times with 10 mL of CHCl3. The extracts were combined and dried with over 2 g of anhydrous MgSO4 for 30 min. The drying agent was filtered off, and the solvent was removed under vacuum. The crude product was purified by column chromatography on silica gel using CHCl3 as eluent. The purity of the product was monitored by TLC using chloroform as eluent.
Yield: 0.28 g; 66%; yellow solid; melting point: 187–188 °C;; 1HNMR (300 MHz, CDCl3): δ (ppm) 1.46 (3H, t, CH3), 2.81 (3H, s, CH3), 4.09 (2H, q, CH2), 6.97–8.50 (13H, m, arom.), 8.96 (1H, s, CH), 12.75 (1H, s, NH); FT–IR (ATR, selected lines): ν (cm−1) 1642 (C=N); MS (ESI) m/z [M + H]+ 427.1882, calculated m/z 427.1929; analysis (%), calc./found: C 73.22/73.50, H 5.44/5.16, N 13.14/13.19.
Method B
The amount of 0.3 g of 4-(4-fluoroanilino)-6-methyl-2-phenylpyrimidine-5-carbaldehyde (3) (0.98 mmol) was placed in a round-bottom flask equipped with a reflux condenser and dissolved in 10 mL of THF. Then 0.2 g of p-phenetidine (1.5 mmol) and 2 mg of indium(III) trifluoromethanesulfonate were added. The reaction mixture was stirred at room temperature for 48 h and processed as in Method A. Yield: 0.40 g; 94%.
Method C
The amount of 0.3 g of 4-(4-fluoroanilino)-6-methyl-2-phenylpyrimidine-5-carbaldehyde (3) (0.98 mmol) was placed in a round-bottom flask equipped with a reflux condenser and suspended in 10 mL of methanol. Then 0.2 g of p-phenetidine (1.5 mmol) and 2 mg of indium(III) trifluoromethanesulfonate were added. The reaction mixture was stirred at room temperature for 48 h and processed as in Method A. Yield: 0.15 g; 28%.
Stolarczyk M., Wolska A., Mikołajczyk A., Bryndal I., Cieplik J., Lis T, & Matera-Witkiewicz A. (2021). A New Pyrimidine Schiff Base with Selective Activities against Enterococcus faecalis and Gastric Adenocarcinoma. Molecules, 26(8), 2296.