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Gold

Gold is a precious metal with a unique, lustrous appearance.
It is highly valued for its rarity, durability, and conductive properties.
Gold has a wide range of applications, from jewelry and coinage to electronics and dentistry.
Researchers utilize gold in various scientific fields, including nanomaterlic, biomedical, and catalytic applications.
Optimizing gold research protocols is crucial for reproducibilty and accuracy.
PubCompare.ai empowers gold research with AI-driven protocol optimization, enabling researchers to quickly locate the best protocols from literature, pre-prints, and patents using intellgent comparison tools.
This maximizes efficiency and precission in gold research, driving scientific discovery and innovation.

Most cited protocols related to «Gold»

Unless otherwise stated, UCHIME results were obtained using the USEARCH v4.2.52. Perseus results were obtained using v1.24 of the AmpliconNoise package. MAFFT v6.853 (Katoh and Toh, 2008 (link)) was used by Perseus to create alignments. The reference database used for both ChimeraSlayer and UCHIME was the ‘gold’ set in http://sourceforge.net/projects/microbiomeutil/files/, version 2011-11-02. Unless otherwise stated, Perseus results were obtained using PerseusD v1.24, a variant of the original Perseus algorithm that follows UCHIME by only testing parents that have been classified as non-chimeric and are at least twice as abundant as the query. For a comparison of Perseus with PerseusD, see the Supplemental Material.
Publication 2011
Chimera Gold Parent
The DDH benchmark data set was extended compared to previous studies aiming at an increased precision and significance of the ranking of the genome-to-genome distance methods and the models for the conversion to DDH values. In detail, the here used data set (henceforth called “DS1”) comprised 156 unique genome pairs along with their respective DDH values: 62 from Goris et al. [6 (link)], 31 from the GOLD database [25 (link)], and 63 from Richter et al. [7 (link)]. Only the first two sources had been considered in a previous publication on GBDP as DDH replacement [8 (link)].
If several DDH/ANIb/ANIm/Tetra values were present for a single genome pair, they were averaged. A single genome pair showed a DDH value above 100% similarity (i.e., 100.9% between Escherichia coli O157:H7 EDL933 and Escherichia coli O157:H7 Sakai). As it biologically made not much sense this value was set to 100% to maintain proper input data for some of the statistical models (see below). Another genome pair (Thermotoga maritima MSB8 and Thermotoga petrophila RKU-1) had a contradicting relation between its DDH value (16.9%) and the genome based distance/similarity measures (GBDP, ANI, ANIb, ANIm and Tetra) on the other hand [7 (link)]. Following [7 (link)], this questionable data point was excluded from the correlation analyses. The full list of genome pairs used in this study is found in the Additional file 1.
To detect significant deviations, if any, between the new and the previous GBDP implementation, the data subset “DS2” was created, containing only the previously available data points [8 (link)]. For comparing GBDP with the first ANI implementation, data subset “DS3” comprised the 62 data points in common between [6 (link),8 (link)]; for comparison with the JSpecies study, subset “DS4” contained only the 98 DDH values in common between [7 (link),8 (link)].
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Publication 2013
Escherichia coli O157 Genome Gold Tetragonopterus Thermotoga maritima Thermotoga petrophila
We profiled the epigenetic landscape of 990 unique donors forming the control cohort of the Assessment of Risk for Colorectal Cancer Tumours in Canada (ARCTIC) project.14 (link) Fifteen μl of lymphocyte-derived DNA extracted (at an average concentration 90 ng/μl) was bisulfite-converted using the EZ-96 DNA Methylation-Gold Kit (Zymo Research, Orange, CA); 4μl of bisulfite-treated DNA was then analyzed on the HumanMethylation450 BeadChip from Illumina according to the manufacturer’s protocol. Intensities were normalized using Illumina’s internal normalization probes and algorithms, without background subtraction. Beta values with assigned detection p-values > 0.01 were treated as missing data. CpG sites with more than 1% missing data across all samples were discarded.
We removed from analysis samples that were outliers with respect to any one of the internal control probes (excluding probes designed to evaluate the background noise and probes designed to normalize the data) and samples that were not of non-Hispanic white ancestry, either self-declared or by investigation of genetic ancestry using genome-wide SNP data. After sample exclusion, we were left with 489 adult males and 357 adult females.
Publication 2013
Adult Colorectal Carcinoma Colorectal Neoplasms DNA Methylation Donors Genome Gold Health Risk Assessment Hispanics hydrogen sulfite Lymphocyte Males Malignant Neoplasms Neoplasms Reproduction Woman
A gold standard for transcription factor targets were obtained from the study by Chen et al. (2008 (link)). The article defined an association score between each gene and a transcription factor that varied from 0 to 1. As scores showed a clear bimodal distribution, we considered all genes with a score >0.6 to be targets of the corresponding transcription factor.
In the MEM webtool (http://biit.cs.ut.ee/mem), we selected 12 datasets on mouse Affymetrix platform 430 2.0. Since the ChIP-seq study was performed on mouse embryonic stem (ES) cells, we selected only the datasets that mentioned ES cell in their description. The list of datasets is available in the Supplementary Material.
We queried each of the transcription factors, for which we had binding information, separately. The MEM webtool performed a similarity search on each dataset using correlation distance between the transcription factor and other genes. The resulting lists of correlated genes were used in aggregation and assessing the AUC.
To combine the data from ChIP-seq with co-expression queries, we translated all the results into Ensembl gene identifiers using g:Convert (Reimand et al., 2007 (link)).
Publication 2012
Chromatin Immunoprecipitation Sequencing Embryonic Stem Cells Genes Gold Mouse Embryonic Stem Cells Mus Transcription Factor
All raw data were centroided and converted to 32-bit uncompressed mzXML file using Bruker Data Analysis. A script was developed to select all possible MS/MS spectra in each LC-MS/MS run that could correspond to a compound present in the sample. For each compound, we calculated the theoretical mass M from its chemical composition and searched for the M+H, M+2H, M+K, and M+Na adducts. Putative identifications included all MS/MS spectra whose precursor m/z had a ppm error <50 compared to the theoretical mass of each possible precursor m/z; all tandem MS/MS spectra with an MS1 precursor intensity of <1E4 were ignored. All candidate identifications were manually inspected and the most abundant representative spectrum for each compound was added to the corresponding library at the gold or bronze level based upon an expert evaluation of the spectrum quality. The best MS/MS spectrum per compound as added to the GNPS-Collections library without filtering or alteration from the mzXML files.
Publication 2016
cDNA Library chemical composition Gold Tandem Mass Spectrometry

Most recents protocols related to «Gold»

Example 1

This example describes an exemplary nanostructure (i.e. nanocomposite tecton) and formation of a material using the nanostructure.

A nanocomposite tecton consists of a nanoparticle grafted with polymer chains that terminate in functional groups capable of supramolecular binding, where supramolecular interactions between polymers grafted to different particles enable programmable bonding that drives particle assembly (FIG. 4). Importantly, these interactions can be manipulated separately from the structure of the organic or inorganic components of the nanocomposite tecton, allowing for independent control over the chemical composition and spatial organization of all phases in the nanocomposite via a single design concept. Functionalized polystyrene polymers were made from diaminopyridine or thymine modified initiators via atom transfer radical polymerization, followed by post-functionalization to install a thiol group that allowed for particle attachment (FIG. 5). The polymers synthesized had three different molecular weights (˜3.7, ˜6.0, and ˜11.0 kDa), as shown in FIG. 6, with narrow dispersity (Ð<1.10), and were grafted to nanoparticles of different diameters (10, 15, 20, and nm) via a “grafting-to” approach.

Once synthesized, nanocomposite tectons were functionalized with either diaminopyridine-polystyrene or thymine-polystyrene were readily dispersed in common organic solvents such as tetrahydrofuran, chloroform, toluene, and N,N′-dimethylformamide with a typical plasmonic resonance extinction peak at 530-540 nm (FIG. 7A) that confirmed their stability in these different solvents. Upon mixing, diaminopyridine-polystyrene and thymine-polystyrene coated particles rapidly assembled and precipitated from solution, resulting in noticeable red-shifting, diminishing, and broadening of the extinction peak within 1-2 minutes (example with 20 nm gold nanoparticles and 11.0 kDa polymers, FIG. 7B). Within 20 minutes, the dispersion appeared nearly colorless, and large, purple aggregates were visible at the bottom of the tube. After moderate heating (˜55° C. for ˜1-2 minutes for the example in FIG. 7B), the nanoparticles redispersed and the original color intensity was regained, demonstrating the dynamicity and complete reversibility of the diaminopyridine-thymine directed assembly process. Nanocomposite tectons were taken through multiple heating and cooling cycles without any alteration to assembly behavior or optical properties, signifying that they remained stable at each of these thermal conditions (FIG. 7C).

A key feature of the nanocomposite tectons is that the sizes of their particle and polymer components can be easily modified independent of the supramolecular binding group's molecular structure. However, because this assembly process is driven via the collective interaction of multiple diaminopyridine and thymine-terminated polymer chains, alterations that affect the absolute number and relative density of diaminopyridine or thymine groups on the nanocomposite tecton surface impact the net thermodynamic stability of the assemblies. In other words, while all constructs should be thermally reversible, the temperature range over which particle assembly and disassembly occurs should be affected by these variables. To better understand how differences in nanocomposite tecton composition impact the assembly process, nanostuctures were synthesized using different nanoparticle core diameters (10-40 nm) and polymer spacer molecular weights (3.7-11.0 kDa), and allowed to fully assemble at room temperature (˜22° C.) (FIG. 8). Nanocomposite tectons were then monitored using UV-Vis spectroscopy at 520 nm while slowly heating at a rate of 0.25° C./min, resulting in a curve that clearly shows a characteristic disassembly temperature (melting temperature, Tm) for each nanocomposite tecton composition.

From these data, two clear trends can be observed. First, when holding polymer molecular weight constant, Tm increases with increasing particle size (FIG. 8A). Conversely, when keeping particle diameter constant, Tm drastically decreases with increasing polymer length (FIG. 8B). To understand these trends, it is important to note that nanocomposite tecton dissociation is governed by a collective and dynamic dissociation of multiple individual diaminopyridine-thymine bonds, which reside at the periphery of the polymer-grafted nanoparticles. The enthalpic component of nanocomposite tecton bonding behavior is therefore predominantly governed by the local concentration of the supramolecular bond-forming diaminopyridine and thymine groups, while the entropic component is dictated by differences in polymer configuration in the bound versus unbound states.

All nanocomposite tectons possess similar polymer grafting densities (i.e. equivalent areal density of polymer chains at the inorganic nanoparticle surface, FIG. 9) regardless of particle size or polymer length. However, the areal density of diaminopyridine and thymine groups at the periphery of the nanocomposite tectons is not constant as a function of these two variables due to nanocomposite tecton geometry. When increasing inorganic particle diameter, the decreased surface curvature of the larger particle core forces the polymer chains into a tighter packing configuration, resulting in an increased areal density of diaminopyridine and thymine groups at the nanocomposite tecton periphery; this increased concentration of binding groups therefore results in an increased Tm, explaining the trend in FIG. 8A.

Conversely, for a fixed inorganic particle diameter (and thus constant number of polymer chains per particle), increasing polymer length decreases the areal density of diaminopyridine and thymine groups at the nanocomposite tecton periphery due to the “splaying” of polymers as they extend off of the particle surface, thereby decreasing Tm in a manner consistent with the trend in FIG. 8B. Additionally, increasing polymer length results in a greater decrease of system entropy upon nanocomposite tecton assembly, due to the greater reduction of polymer configurations once the polymer chains are linked via a diaminopyridine-thymine bond; this would also be predicted to reduce T m. Within the temperature range tested, all samples were easily assembled and disassembled via alterations in temperature. Inorganic particle diameter and polymer length are therefore both effective handles to control nanocomposite tecton assembly behavior.

Importantly, because the nanocomposite tecton assembly process is based on dynamic, reversible supramolecular binding, it should be possible to drive the system to an ordered equilibrium state where the maximum number of binding events can occur. The particle cores and polymer ligands are polydisperse (FIG. 10) and ordered arrangements represent the thermodynamically favored state for a set of assembled nanocomposite tectons. When packing nanocomposite tectons into an ordered lattice, deviations in particle diameter would be expected to generate inconsistent particle spacings that would decrease the overall stability of the assembled structure. However, the inherent flexibility of the polymer chains should allow the nanocomposite tectons to adopt a conformation that compensates for these structural defects. As a result, an ordered nanocomposite tecton arrangement would still be predicted to be stable if it produced a larger number of diaminopyridine-thymine binding events than a disordered structure and this increase in binding events outweighed the entropic penalty of reduction in polymer chain configurations.

To test this hypothesis, multiple sets of assembled nanocomposite tectons were thermally annealed at a temperature just below their Tm, allowing particles to reorganize via a series of binding and unbinding events until they reached the thermodynamically most stable conformation. The resulting structures were analyzed with small angle X-ray scattering, revealing the formation of highly ordered mesoscale structures where the nanoparticles were arranged in body-centered cubic superlattices (FIG. 11). The body-centered cubic structure was observed for multiple combinations of particle size and polymer length, indicating that the nanoscopic structure of the composites can be controlled as a function of either the organic component (via polymer length), the inorganic component (via particle size), or both, making this nanocomposite tecton scheme a highly tailorable method for the design of future nanocomposites.

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Patent 2024
chemical composition Chloroform Cuboid Bone Dimethylformamide Entropy Extinction, Psychological Gold Human Body Ligands Molecular Structure Polymerization Polymers Polystyrenes Radiography Solvents Spectrum Analysis Sulfhydryl Compounds tetrahydrofuran Thymine Toluene Vibration Vision
Not available on PMC !

Example 1

One unit of a “Gold” token represents 100 g of metal gold contained in a secure box, for example as described above, equipped with an electronic circuit (such as a wallet node device) capable of reporting a theft by violation of the envelope or movement detection using the GPS module.

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Patent 2024
Gold Medical Devices Metals Movement

EXAMPLE 23

One llama (No. 149) was immunized with 6 boosts (100 or 50 μg/dose at weekly intervals) of R&D Systems (Minneapolis, MN, US) Cat #1224-PL, which is the ectodomain of human PD-L2 (rhPDL2-Fc), formulated in Titermax Gold (Titermax USA, Norcross, GA, US), according to standard protocols. At week 4, sera were collected to define antibody titers against PD-L2 by ELISA. In short, 96-well Maxisorp plates (Nunc Wiesbaden, Germany) were coated with rhPDL2-Fc. After blocking and adding diluted sera samples, the presence of anti-PD-L2 Nanobodies was demonstrated by using rabbit anti-llama immunoglobulin antiserum and anti-rabbit immunoglobulin alkaline phosphatase conjugate. The titer exceeded 16000.

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Patent 2024
Alkaline Phosphatase Antibodies, Anti-Idiotypic Enzyme-Linked Immunosorbent Assay Gold Homo sapiens Immune Sera Immunization Immunoglobulins Llamas Rabbits Serum TiterMax VHH Immunoglobulin Fragments

Example 4

SEM samples were prepared by dispersing powder onto an adhesive carbon-coated sample stub a coating with a thin conductive layer of gold/palladium using a Polaron Autocoater E5200. Samples were analyzed using a FEI Quanta 200 SEM fitted with an Everhart-Thornley (secondary electron) detector, operating in high vacuum mode. FIG. 4 is a group of scanning electron microscope (SEM) scans of several DHE preparations that comprise DHE alone or with MCC, MCC/HPMC, or PVP.

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Patent 2024
Carbon Electric Conductivity Electrons Gold Palladium Polaron Powder Radionuclide Imaging Scanning Electron Microscopy Vacuum

EXAMPLE 11

Two llamas (No. 146 and No. 147) were immunized with 6 boosts (100 or 50 μg/dose at weekly intervals) of R&D Systems (Minneapolis, MN, US) Cat #1086-PD, which is the ectodomain of human PD1 (rhPD1-Fc), formulated in Titermax Gold (Titermax USA, Norcross, GA, US), according to standard protocols. At week 4, sera were collected to define antibody titers against PD-1 by ELISA. In short, 96-well Maxisorp plates (Nunc Wiesbaden, Germany) were coated with rhPD1-Fc. After blocking and adding diluted sera samples, the presence of anti-PD-1 Nanobodies was demonstrated by using rabbit anti-llama immunoglobulin antiserum and anti-rabbit immunoglobulin alkaline phosphatase conjugate. The titer exceeded 16000 for both animals.

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Patent 2024
Alkaline Phosphatase Animals Antibodies, Anti-Idiotypic Enzyme-Linked Immunosorbent Assay Gold Homo sapiens Immune Sera Immunization Immunoglobulins Llamas Rabbits Serum TiterMax VHH Immunoglobulin Fragments

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The EZ DNA Methylation-Gold Kit is a product offered by Zymo Research for bisulfite conversion of DNA samples. It is designed to convert unmethylated cytosine residues to uracil, while leaving methylated cytosines unchanged, enabling the detection and analysis of DNA methylation patterns.
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More about "Gold"

Gold is a rare, precious, and highly valued metal that is renowned for its unique, lustrous appearance.
This versatile element has a wide range of applications, from jewelry and coinage to electronics and dentistry.
Researchers extensively utilize gold in various scientific fields, including nanomaterials, biomedical, and catalytic applications.
Optimizing gold research protocols is crucial for reproducibility and accuracy, which is where PubCompare.ai comes in.
PubCompare.ai empowers gold research by providing AI-driven protocol optimization, enabling researchers to quickly locate the best protocols from literature, pre-prints, and patents using intelligent comparison tools.
This maximizes the efficiency and precision of gold research, driving scientific discovery and innovation.
The ProLong Gold antifade reagent, EZ DNA Methylation-Gold Kit, and SYBR Gold are just a few examples of the specialized products and tools that researchers can leverage to enhance their gold-related studies.
Beyond the research applications, gold also finds use in the form of ProLong Gold antifade reagent with DAPI, ProLong Gold, ProLong Gold Antifade Mountant, and ProLong Gold Antifade Mountant with DAPI.
These products are often used in microscopy and imaging applications, where the unique properties of gold, such as its durability and conductive characteristics, prove invaluable.
Synonyms and related terms for gold include the chemical symbol Au, the precious metal, the lustrous element, the conductive material, the biomedical substrate, and the catalytic agent.
Abbreviations like DAPI (4',6-diamidino-2-phenylindole) and S-4800 (a high-resolution scanning electron microscope) further expand the scope of gold-related topics.
By incorporating these insights and leveraging the power of PubCompare.ai, researchers can maximize the efficiency and precision of their gold-related studies, driving scientific discovery and innovation in this fascinating field.