Thermoccocus kodakarensis was isolated from Kodakara Island, Kagoshima, Japan (Morikawa et al., 1994 (
link); Atomi et al., 2004 (
link)).
T. kodakarensis KU216 (Sato et al., 2003 (
link), 2005 (
link)) and derivative strains were cultivated under strictly anaerobic conditions at 85°C in nutrient-rich medium (ASW-YT-m1-S
0 or ASW-YT-m1-pyruvate) or synthetic medium (ASW-AA-m1-S
0). ASW-YT-m1-S
0, ASW-YT-m1-pyruvate, and ASW-AA-m1-S
0 are modified versions of ASW-YT-S
0, ASW-YT-pyruvate, and ASW-AA-S
0 media, respectively. ASW-YT-S
0 was composed of 0.8 × artificial seawater (ASW) (Robb and Place, 1995 ), 5 g L
−1 yeast extract, 5 g L
−1 tryptone, and 2 g L
−1 elemental sulfur. In ASW-YT-m1-S
0, 20 μM KI, 20 μM H
3BO
3, 10 μM NiCl
2, and 10 μM Na
2WO
4 were supplemented. In ASW-YT-m1-pyruvate medium, elemental sulfur was replaced with 5 g L
−1 sodium pyruvate. ASW-AA-S
0 was composed of 0.8 × ASW, a mixture of 20 amino acids, modified Wolfe’s trace minerals and a mixture of vitamins (Sato et al., 2003 (
link)). In ASW-AA-m1-S
0, 20 μM KI, 20 μM H
3BO
3, 10 μM NiCl
2, and 10 μM Na
2WO
4 were supplemented, and the concentrations of
l-arginine hydrochloride and
l-valine were increased (from 125 mg L
−1 to 250 mg L
−1 and from 50 mg L
−1 to 200 mg L
−1, respectively). When cells without a
pyrF gene were grown, 10 μg mL
−1 uracil was added to make ASW-AA-m1-S
0(+Ura). To remove oxygen in the medium, 5% (w/v) Na
2S solution was added until the medium became colorless. Resazurine (0.5 mg L
−1) was also added to all media as an oxygen indicator. For solid medium used to isolate transformants, 10 g L
−1 gelrite, 7.5 g L
−1 5-fluoroorotic acid (5-FOA), 10 μg mL
−1 uracil, 4.5 mL of 1 M NaOH and 0.2% (v/v) polysulfide solution (10 g Na
2S 9H
2O and 3 g sulfur flowers in 15 mL H
2O) rather than elemental sulfur was supplemented to ASW-AA-m1 medium.
Escherichia coli DH5α (Takara Bio, Kusatsu, Japan) and BL21-Codonplus(DE3)-RIL strains (Agilent Technologies, Santa Clara, CA) were cultivated at 37°C in Lysogeny broth (LB) medium supplemented with ampicillin (100 mg L
−1).
E. coli DH5α was used for recombinant plasmid construction and
E. coli BL21-Codonplus (DE3)-RIL was used for heterologous gene expression. Chemicals were purchased from Wako Pure Chemicals (Osaka, Japan) or Nacalai Tesque (Kyoto, Japan) unless mentioned otherwise.
Su Y., Michimori Y, & Atomi H. (2023). Biochemical and genetic examination of two aminotransferases from the hyperthermophilic archaeon Thermococcus kodakarensis. Frontiers in Microbiology, 14, 1126218.