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Xenon

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Most cited protocols related to «Xenon»

Cultured cells were transfected using Lipofectamine 2000 (Invitrogen) 2 or 3 days before imaging. Jurkat T cells were electroporated using a MicroPorator (MP-100, Digital Bio) 1 day before imaging. For cytosolic Ca2+ imaging using fura-2, cells were loaded with 5 μM fura-2 AM (Molecular Probes, USA) at room temperature (22–24 °C) for 40–60 min in 0.1% BSA-supplemented physiological salt solution (PSS) containing (in mM) 150 NaCl, 4 KCl, 2 CaCl2, 1 MgCl2, 5.6 glucose and 25 HEPES (pH 7.4). Before imaging, the loading solution was replaced with PSS without BSA.
The images were captured using an inverted microscope (IX81, Olympus, Japan) equipped with a × 20 objective (numerical aperture (NA)=0.75, UPlanSApo, Olympus) or a × 40 objective (NA 0.90, UApo/340, Olympus), an electron-multiplying cooled-coupled device (EM-CCD) camera (ImagEM, Hamamatsu Photonics, Japan), a filter wheel (Lambda 10-3, Sutter Instrument, USA), a xenon lamp (ebx75) and a metal halide lamp (EL6000, Leica, Germany) at a rate of one frame per 2 or 3 s with the following excitation/emission filter settings: 472±15 nm/520±17.5 nm for G-GECO1.1, CEPIA1er, G-CEPIA1er, CEPIA2–4mt and EYFP-er; 562±20 nm/641±37.5 nm for R-GECO1, R-CEPIA1er and mCherry-STIM1; 377±25 nm/466±20 nm and 377±25 nm/520±17.5 nm for GEM-GECO1 and GEM-CEPIA1er; 340±13 nm/510±42 nm and 365±6 nm/510±42 nm for fura-2; 440±10.5 nm/480±15 nm and 440±10.5 nm/535±13 nm for D1ER19 (link)20 (link). For analysis of the ratiometric indicators, we calculated the fluorescence ratio (F466/F520 for GEM-GECO1 and GEM-CEPIA1er; F340/F365 for fura-2; F535/F480 for D1ER). Photobleaching was corrected for using a linear fit to the fluorescence intensity change before agonist stimulation. All images were analysed with ImageJ software.
To image subcellular ER Ca2+ dynamics during agonist-induced Ca2+ wave formation, we imaged HeLa cells expressing either G-CEPIA1er or R-CEPIA1er. Images were captured at a rate of one frame per 30–100 ms using a × 60 objective (NA 1.45, PlanApo TIRF, Olympus) and the metal halide lamp or an LED lamp (pE-100, CoolLED, UK). To evaluate Ca2+ wave velocity in the ER and cytosol, images were normalized by the resting intensity, and a linear region of interest (ROI) was defined along the direction of wave propagation. A line-scan image was created by averaging 30 adjacent linear ROIs parallel to the original ROI, and time derivative was obtained to detect the time point that showed maximal change during the scan duration. Then, the time points were plotted against the pixel, and the wave velocity was estimated by the slope of the least-squares regression line.
For mitochondrial Ca2+ imaging with ER and cytosolic Ca2+, mitochondrial inner membrane potential or mitochondrial pH at subcellular resolution, we imaged HeLa cells with a confocal microscope (TCS SP8, Leica) equipped with a × 63 objective (NA 1.40, HC PL APO, Leica) at a rate of one frame per 2 or 3 s with the following excitation/emission spectra: R-GECO1mt (552 nm/560–800nm), G-CEPIA1er (488 nm/500–550 nm) and GEM-GECO1 (405 nm/500–550 nm); GEM-GECO1mt (405 nm/500–550 nm), JC-1 (488 nm/500–550 nm and 488 nm/560–800nm); R-GECO1mt (552 nm/560–800nm), SypHer-dmito (405 nm/500–550 nm and 488 nm/500–550 nm). For analysis of JC-1 and SypHer-dmito, we calculated the fluorescence ratio (488 nm/560–800 nm over 488 nm/500–550 nm for JC-1 (ref. 55 (link)); 488 nm/500–550 nm over 405 nm/500–550 nm for SypHer-dmito62 (link)).
To perform in situ Ca2+ titration of CEPIA, we permeabilized the plasma membrane of HeLa cells with 150 μM β-escin (Nacalai Tesque, Japan) in a solution containing (in mM) 140 KCl, 10 NaCl, 1 MgCl2 and 20 HEPES (pH 7.2). After 4 min treatment with β-escin, we applied various Ca2+ concentrations in the presence of 3 μM ionomycin and 3 μM thapsigargin, and estimated the maximum and minimum fluorescent intensity (Rmax and Rmin), dynamic range (Rmax/Rmin), Kd and n.
For the estimation of [Ca2+]ER based on the ratiometric measurement using GEM-CEPIA1er (Figs 1e,f and 5b and Supplementary Fig. 5f), [Ca2+]ER was obtained by the following equation:

where R=(F at 466 nm)/(F at 510 nm), n=1.37 and Kd=558 μM.
To evaluate pH-dependent change of EYFP-er fluorescence (Supplementary Fig. 4a–d), we stimulated HeLa cells expressing EYFP-er in a PSS (adjusted to pH 6.8) containing monensin (10 μM, Wako) and nigericin (10 μM, Wako). Subsequently, the cells were alkalinized with a solution containing (in mM) 120 NaCl, 30 NH4Cl, 4 KCl, 2 CaCl2, 1 MgCl2, 5 HEPES and 5.6 Glucose (pH 7.4)67 (link).
Publication 2014
Aftercare Cells Cultured Cells Cytosol Electrons Escin Fingers Fluorescence Fura-2 fura-2-am Glucose HeLa Cells HEPES Ionomycin Jurkat Cells lipofectamine 2000 Magnesium Chloride Medical Devices Membrane Potential, Mitochondrial Metals Microscopy Microscopy, Confocal Mitochondria Molecular Probes Monensin Nigericin physiology Plasma Radionuclide Imaging Reading Frames Reproduction Sodium Chloride STIM1 protein, human Thapsigargin Titrimetry Xenon
Mice were killed, the eyes enucleated, and whole retinas removed from eye cups under infra-red illumination. Small pieces of retina were dissected in a drop of chilled Locke's solution (112.5 mM NaCl, 3.6 mM KCl, 2.4 mM MgCl2, 1.2 mM CaCl2, 10 mM HEPES, 0.02 mM EDTA, 20 mM NaHCO3, 3 mM Na2-succinate, 0.5 mM Na-glutamate, 10 mM glucose), and placed into a recording chamber. The chamber was continuously refreshed with Locke's solution, pH 7.4, equilibrated with 95% O2/5% CO2, and maintained at 35–37°C with a heating system designed for microscopy (ALA Scientific). Using silanized suction pipettes, we recorded from photoreceptors embedded in 50–100-μm diameter slices of retina exclusively in the “OS out” configuration (Nikonov et al., 2005 (link)); in this effort several nuclei and conjoined “inner segment” tissue were intentionally drawn into the pipette. Once the tissue was drawn into the pipette, responses were evoked with calibrated flashes of light delivered under control of a customized LabView (National Instruments) interface. The optical system in the configuration used for these experiments has two stimulation channels: the light source in one channel is a tungsten-halogen lamp, and in the second a xenon flash lamp that delivers ∼20-μs pulses. Experiments with WT mouse retinal slices required the use of steady illumination to suppress rod activity, and the tungsten-halogen channel was employed for this purpose.
The “inner segment” limb of the rod and cone circulating current is an outward membrane current, carried primarily by K+ channels; light responses recorded from inner segment membranes are thus recorded by the amplifier as negative-going, resulting from the suppression of the outward membrane current as the cell hyperpolarizes toward the K+ reversal potential. Here we will present all photocurrent responses in the conventional manner as positive-going. However, the actual sign (and direction) of the recorded membrane currents will be referred to as needed.
As the expression of mouse M-cone opsin in mice varies in a dorso-ventral gradient (Applebury et al., 2000 (link)), we developed a method that allows the dorsal or ventral region of the retina to be dissected under infrared illumination and used for suction pipette recordings (Nikonov et al., 2005 (link)). This method has played a critical role in the complete characterization of cone function in the WT mouse.
Publication 2006
Bicarbonate, Sodium Cell Nucleus Cells Cone Opsins Edetic Acid Glucose Glutamate Halogens HEPES Infrared Rays Light Locke's solution Magnesium Chloride Microscopy Mus Photoreceptor Cells Pulses Retina Retinal Cone Rod Cell Inner Segment Sodium Chloride Succinate Suction Drainage Tissue, Membrane Tissues Tungsten Xenon

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Publication 2010
Actins Arecaceae Clathrin Cloning Vectors F-Actin lipofectamine 2000 Neurons Radius Rattus norvegicus Reading Frames Sapphire Transfection Xenon
The holographic microscope (Fig. 1a) was mounted around a commercial epi-fluorescence upright microscope (Olympus BX50WI). As a source for uncaging laser we used a 405nm diode laser (CUBE 405−50, Coherent).
The output beam was expanded (25x) to match the input window of a PALM-SLM (PPM X8267, Hamamatsu) which operates in reflection mode. A 4f telescope (L1 = 750mm, L2 = 300mm) was used to image via a dichroic mirror (DM) (Chroma Technology 425DCXR) the plane of the SLM to the rear aperture of the objective (LUMPLFL60XW/IR). The main source of power loss with an SLM device is related to the portion of un-diffracted light that forms an unwanted central spot (zero order) in the excitation field and to the light diffracted into higher orders (about 40% in total). The diffracted beam was spatially displaced from the zero order spot by introducing a phase grating in the hologram. The zero order spot, the higher orders and the ghost image were eliminated by placing a beam blocker and a diaphragm in the intermediate Fourier plane. This reduced the excitation field to a square of approximately 50×50µm2 (link). Alexa 594 was excited with a 75-W Xenon arc source coupled to a monochromator (Optoscan, Cairn Research) (centre-wavelength at 540nm, slit width 30nm) and imaged using an emission filter Chroma Technology HQ 600/40M. The laser intensity and duration were controlled using a 1MHz Digital-to-Analog Converter (DAC) (National Instruments 6713), whose output clock was linked to the clock of the Analog-to-Digital Converter (ADC), in order to synchronize the illumination pulse and voltage-clamp acquisition. Sample fluorescence was captured on a CCD camera (CoolSNAP HQ2, Roper Scientific), at the upper port of the microscope. For the experiments on cerebellum slices a similar setup was integrated into a modified photolysis system (Prairie Technologies, WI, USA) on an upright microscope (Nikon) equipped with a 100x water immersion objective (Nikon, Plan 1.1 NA) and a 405 nm diode laser (Deep Star, Omicron, Germany). For a description of preparation of brain slices, recording conditions and data analysis see Supplementary Method online.
Publication 2008
Alexa594 Arecaceae Brain Cerebellum Fluorescence Holography Lasers, Semiconductor Light Medical Devices Microscopy Microscopy, Fluorescence Photolysis Pulse Rate Red Cell Ghost Reflex Submersion Telescopes Vaginal Diaphragm Xenon
As the measurement device, the same setup like that formerly reported by Samorski et al. [21 (link)] was applied with only few but influential changes referring to signal qualities. The major change was varying the distance between the optical light fiber and the microtiter plate bottom as well as the tilting angle. The distance of the optical light fiber to the microtiter plate bottom was reduced from 7 mm to 4 mm, and the tilting angle was increased from 23° to 35°. This adjustment mainly reduced the back scattering of light from internal reflections within the wells, thus stabilizing the measurement signals. Moreover, the flashes of the xenon flash lamp during one measurement were reduced from 200 to 50 flashes to improve the life-time of the lamp. The biomass concentrations were measured via scattered light at 620 nm excitation without an emission filter. The GFP concentrations were monitored through an excitation filter of 485 nm and an emission filter of 520 nm. Furthermore, NADH was monitored by an excitation of 340 nm and an emission of 460 nm. The FbFP preferred an excitation of 460 nm and an emission of 520 nm. The sensitivity of the photomultiplier (Gain) was adapted to the different measurement tasks and, therefore, different signal intensities were obtained. The entire device was called "BioLector" in the following text to facilitate referencing of the measurement device. The BioLector holds a data reproducibility of smaller than 5% standard deviation, when cultivating the same clone in the same medium on a microtiter plate. Due to small standard deviation and the high information content, error bars in the figures were omitted.
The pH was measured by adding a sterile solution of HPTS (8-hydroxypyrene-1,3,6-trisulfonic acid trisodium salt, part number: 56360, Fluka, Germany) to TB medium before inoculation with cells. The soluble fluorescent pH indicator was applied in a final concentration of 20 mg/L in the fermentation media. This indicator was excited by filtered xenon light with a wavelength of 410 nm and 460 nm and the emission was detected for both excitation wavelengths at 510 nm. The pH value could be derived from a calibration with buffers in which the same concentration of HPTS (20 mg/L) as in the culture medium was added. Buffers ranging from pH 4.0 to 9.0 and having an ionic strength of 120 mM (20 mM buffer and 100 mM NaCl) were applied to calibrate the measurement device. For each buffer condition, the intensity ratio IR was calculated as follows:

After determining IR for the different buffers, the pH values were correlated with the Boltzmann equation [25 (link)] as follows:

The calibration parameters pHO, dpH, IR, min and IR, max were calculated with an Excel sheet by using the implied Solver function, determining the least square root of the function (2).
The experiments were exclusively carried out with black standard round 96 well microtiter plates with an optical bottom from Greiner Bio-One, Germany (μclear, part number: 655087), that were covered with a gas permeable membrane from Abgene, UK (part number: AB-0718). If not otherwise specified, the experiments were conducted with 200 μL working volume of culture or medium and normally 995 rpm shaking frequency (shaking diameter of 3 mm). At this operation condition a kLa value of 150 1/h was achieved [10 (link)].
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Publication 2009
Acids Buffers Cell Membrane Permeability Cells Clone Cells Fermentation Hypersensitivity Light Medical Devices NADH Plant Roots Reflex Sodium Chloride Sterility, Reproductive Vaccination Xenon

Most recents protocols related to «Xenon»

Example 5

The lightfastness of the dyed hydrolysis resistant polyester films of the present disclosure was determined by using the accelerated weathering tester of Atlas UV test and Xenon Arc Weatherometer (atlas company). The films were exposed continuously to alternate cycles of light and dark; and monitored for changes.

The films are found to withstand exposure for more than 2000 hours.

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Patent 2024
Hydrolysis Light Polyesters Xenon
The photocatalytic behaviour was investigated by the oxidation of methylene blue and reduction of Cr(VI). The photocatalytic performance was evaluated under simulated solar light using a 300 W Xe lamp (a high-pressure 150 W xenon lamp, LOT – QuantumDesign GmbH equipped with the AM1.5G filter). The intensity of the incident light that reaches the surface of the investigated solution was equal to 100 mWcm−2 (measured using a Coherentâ FieldMate Laser Power Meter). In a typical test, 20 mg of catalyst was placed in a 50 mL aqueous pollutant solution. The concentration of MB and Cr(VI) was 1·10–5 M. Before irradiation, the suspension was vigorously stirred in the dark for 30 min to reach desorption-adsorption equilibrium. The change in MB and Cr(VI) concentration was monitored by its absorption at 665 nm and 351 nm, respectively, from the UV–Vis (Spektrofotometr UV5100) spectra of the solution, using distilled water as a reference. A total of 0.75 ml of suspension was collected and centrifuged before UV‒Vis measurement. In the case of Cr(VI) photoreduction, the process was conducted in acidified (pH = 3) solutions.
To study the reusability of the prepared photocatalysts, the cycle experiment was repeated 4 times for the photodegradation of methylene blue. After each photodegradation test, the catalyst was collected by centrifugation, dried under natural conditions and used for the next degradation experiment. Moreover, to indicate the role of hydroxyl radicals (·OH), (h +) holes and superoxide radicals (·O2-) in the process of MB degradation, experiments were performed in the presence of appropriate scavengers: t-butanol (TBA), ammonium oxalate (AO) and benzoquinone (BQ). The concentration of each scavenger was equal to 1 mM.
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Publication 2023
1,4-benzoquinone Adsorption Ammonium Oxalate blue 4 carbene Centrifugation Environmental Pollutants Gas Scavengers Hydroxyl Radical Light Methylene Blue Photodegradation Pressure Radiotherapy Superoxides tert-Butyl Alcohol Xenon
The thionine-conjugated TC-TA and the four dual-dyed TC-DR-TA, TC-DY-TA, TC-DG-TA and TC-DB-TA fabrics were cut into 3 cm × 3 cm swatches and then illuminated at a vertical distance of 15 cm for 12 h with a xenon lamp (500 W) equipped with a long-pass filter (λ ≥ 420 nm), and these samples are referred to with the suffix ‘B12h’. One control group of fabrics was similarly illuminated but under a humid environment with 1 mL water added to the fabric swatch every 2 h for 12 h, referred to with the suffix ‘HB12h’. Another control group of fabrics was illuminated under a commercially available LED light (white light, 10 W) at a vertical distance of 18 cm for 5 days without any other light sources, and is referred with a suffix ‘LED’.
Publication 2023
Light thionine Xenon
Photodynamic inactivation studies employing the above bacteria were performed in triplicate as previously described [24 (link), 25 (link), 27 (link), 35 (link), 37 (link)]. Briefly, three fabric samples (1 × 1 cm, ∼40 mg) were individually placed into adjacent wells of two identically prepared 24-well plates. A 100 μL PBS aliquot containing 107–109 CFU/mL of bacteria was added to each of the three wells per plate. The 24-well plate was illuminated at a distance of 12 cm for a defined time period with a xenon lamp (500 W) equipped with a long-pass filter (λ ≥ 420 nm) to provide a light fluence of ~ 65 ± 5 mW/cm2, while an identically prepared 24-well plate was kept without illumination as the dark control. Following illumination, 0.9 mL of sterile PBS was added to each well in both the illuminated and the dark control plates, and the plates were manually stirred with a pipet for 10 s to resuspend the bacteria. Each sample well was then 1:10 serially diluted (100 μL in 0.9 mL aliquots of PBS) six times, and 10 μL from each diluted well were separately plated in columns on gridded six column square plates (TS-agar for S. aureus and MRSA; LB-agar for E. coli), followed by overnight dark incubation at 37 °C. A material-free dark control was prepared by aliquotting 100 μL bacterial PBS solution into 0.9 mL sterile PBS, and following the same dilution process. The number of visible colonies on the agar plates was determined by colony counting, and the survival rate was determined by the ratio of CFU/mL of the illuminated plate versus that of the corresponding material-free dark control. The minimum detection limit was 10 CFU/well (based on the plated 10 μL aliquot from the 1 mL undiluted well), and the detection limits of bacterial survival for S. aureus and E. coli were 0.001% and 0.01%, respectively.
Publication 2023
Agar Bacteria Escherichia coli Light Methicillin-Resistant Staphylococcus aureus Staphylococcus aureus Sterility, Reproductive Technique, Dilution Xenon
The top surfaces of the specimens always were centered in front of the xenon lamp (light source of spectrophotometer) in the center of a spectrophotometer's tube, so repetitive measurements for each specimen could be taken from the same specimen's region (Figure 2). With the use of a spectrophotometer (Perkin Elmer, Waltham, Massachusetts, United States), the color was evaluated based on the Commission Internationale de l'Eclairage's 1976 Lab color space system at the Ministry of Science and Technology in Baghdad. They were incubated in distilled water in glass containers at a temperature of 37°C for 24 hrs with the use of an incubator after numbering the specimens of each subgroup from 1 to 10 for Deionized, Biofresh, and Sidrazac solution with a marker pencil that could not be removed by solutions. Baseline measurements have been then done for measuring light reflection regarding every one of the specimens through the spectrophotometer at visible wave lengths starting from 400 nm–700 nm at intervals of 10 nm, which is whyfor every one of the specimens, we make thirty-one. The values for X, Y, and Z were collected, and the system was transformed to the CIE color space using the MATLAB 8 (version 8, R2012b, 2012/USA). 3D colorimetric measurements are used by the CIE system: the brightness of a color is represented by L values, red-green content by a values, and yellow-blue content by b values, using the following equations [5 ]: L=116YY01/316,a=500XX01/3YY01/3,b=200YY01/3ZZ01/3. where X, Y, Z tristimulus values previously measured, X0, Y0, Z0X, Y, Z values of a perfect white sample(standard), L CIE Lab L value (lightness in Lab color space), a CIE Lab a value (red-green value), and b CIE Lab b value (yellow-blue value).
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Publication 2023
Colorimetry Light Reflex Xenon

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Fura-2 AM is a fluorescent calcium indicator used for measuring intracellular calcium levels. It is a cell-permeable derivative of the parent compound Fura-2. Fura-2 AM can be loaded into cells, where intracellular esterases cleave off the acetoxymethyl (AM) ester group, trapping the Fura-2 indicator inside the cell.
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More about "Xenon"

Xenon is a cutting-edge AI-driven platform developed by PubCompare.ai that helps researchers optimize their research protocols and improve the reproducibility of their studies.
This innovative solution leverages advanced natural language processing and machine learning techniques to analyze research methodologies, identify optimal protocols, and facilitate the replication of high-impact studies.
One of the key features of Xenon is its ability to locate the best research protocols from a vast array of sources, including peer-reviewed literature, preprints, and patents.
By performing AI-driven comparisons, Xenon helps users identify the most effective and reliable protocols, boosting their productivity and enhancing the overall quality of their research.
Beyond protocol optimization, Xenon also integrates seamlessly with other powerful tools and technologies used in scientific research, such as Fura-2 AM, S-4800, D8 Advance, Monochromator, Lambda DG-4, Fluorolog-3 spectrofluorometer, MetaFluor software, Cary Eclipse, MATLAB, and FLS980.
This integration allows researchers to streamline their workflows and access a comprehensive suite of resources to support their work.
By harnessing the power of AI and leveraging a wealth of research data, Xenon empowers scientists to take their research to new heights.
Whether you're a seasoned researcher or just starting your scientific journey, Xenon is a must-have tool that can help you optimize your research protocols, improve reproducibility, and unlock new discoveries.