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Warts

Warts are benign skin growths caused by infection with human papillomavirus (HPV).
They can appear on any part of the body, but are most common on the hands and feet.
Warts vary in appearance, ranging from small, smooth bumps to larger, rougher growths.
While generally harmless, warts can be unsighly and may cause discomfort.
Treatment options include topical medications, cryotherapy, and laser therapy.
Reserach is ongoing to better understand the epidemiology, pathogenesis, and optimal management of warts.

Most cited protocols related to «Warts»

Catalogs are obtained
as 2D SDF files and converted to isomeric SMILES using OpenEye’s
OEChem software.19 (link) We generate up to four
stereoisomers for stereochemically ambiguous molecules. A trial 3D
structure is first generated using Molecular Networks’ Corina
program21 (link) to generate a single canonical
conformation with the best ring puckering if applicable (arguments
are -d neu, wh, rc, mc = 1, canon). Molecules are generated in four
pH ranges using Schrodinger’s Epik version 2.120922 (link) as follows. At pH of 7.05, a single best configuration
is generated using the arguments: “-ph 7.05 -ms 1”.
For the range pH of 6–8 (i.e., 7 ± 1), additional protonated
and tautomeric forms are generated such that they have a relative
population of at least 20% within that pH range using the arguments:
“ph 7.0 -pht 1.0 -tp 0.20”. Similarly for high pH of
7–9.5 (i.e., 8.75 ± 0.75) and low pH of 4.5–6 (i.e.,
5.25 ± 0.75), the arguments are “-ph 8.75 -pht 0.75 -tp
0.20” and “-ph 5.25 -pht 0.75 -tp 0.20” respectively.
For flexibase files used by DOCK 3.6,23 (link),24 (link) conformations
are calculated using OpenEye’s Omega library25 (link) with the following settings: Warts(True), FromCT(False),
FixMaxMatch(1), EnumNitrogen(false), EnumRing(false), EnergyWindow(12.5),
MaxConfGen(100000), MaxConfs(600), RMSThreshold(0.80). Atomic charges
and desolvation are calculated using AMSOL26 (link),27 (link)using a protocol we have reported previously.28 (link) The ZINC processing pipeline continues to evolve and is
described online in more detail at http://wiki.bkslab.org/index.php/ZPP.
Publication 2012
Flexibase Isomerism Rumex Warts Zinc

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Publication 2011
Acquired Immunodeficiency Syndrome Age Groups Anus Cancers, Anal Cells Diagnosis Genitalia Health Planning Homo sapiens Human Papilloma Virus Vaccine Infantile Neuroaxonal Dystrophy Infection Malignant Neoplasms Military Personnel Papillomavirus Infections, Human Patient Discharge Penis Persons, Homeless Pharmaceutical Preparations Physical Examination Scrotum Sexually Transmitted Diseases System, Genitourinary Testing, AIDS Urination Warts
Available information for the statistical analysis was: country, age at and year of diagnosis, gender, histopathological diagnosis, HPV DNA presence, HPV type, and p16INK4a expression. Histological subtypes in anal cancers were grouped into the following categories: squamous cell carcinomas (SCC) 100% warty-basaloid (included exclusively or combinations of warty, basaloid or papillary basaloid histologies), SCC 100% non warty-basaloid (SCC without warty-basaloid morphological features), SCC mixed histologies (mix of previous histological subtypes), other (undifferentiated and poorly differentiated carcinomas, neuroendocrine and adenosquamous carcinomas).
HPV prevalence and HPV type-specific detection percentages were determined according to geographical regions, histopathological categories, gender, patient´s age at diagnosis and year of diagnosis. Prevalence ratios (PRs) were estimated using bivariate and multivariate Poisson regression models with robust variance21 (link). In the final model we included region, year of and age at diagnosis, and gender. Histological diagnosis was not included in the regression analysis since it was considered as an intermediate variable in the carcinogenic process. The best fitting model was selected based on the log-likelihood ratio test. PR were only estimated for anal cancers because AIN 2/3 subset of cases was small and showed a high HPV DNA detection rate (only two cases out of 43 AIN 2/3 were HPV DNA negative).
HPV DNA prevalence was estimated among finally included cases and HPV type specific relative contribution was calculated among HPV DNA positive cases. Multiple infections were added to single types under a weighting attribution proportional to the detection found in cases with single types as previously described14 (link). In order to evaluate the increase or decrease on HPV type specific relative contributions between type of lesions, relative contribution ratios and their 95% confidence intervals (CI) were estimated (ratio of type specific relative contribution: percentage of a specific type in anal cancer/percentage of the same type in high-grade pre-neoplastic lesions).
Agreement between HPV DNA detection and p16INK4a was assessed by Kappa score. The McNemar chi-squared test for matched pair data was used for assessing unequal distribution of discordant results.
Statistical significance for all analyses was set at the two-sided 0.05 level. Data analyses were performed with the Statistical Package for the Social Sciences (SPSS) version 13.0 (SPSS Inc, Chicago, IL, USA) and with STATA version 10.0 (Stata Corporation, Computing Resource Center, College Station, Texas).
Publication 2014
Adenosquamous Carcinoma Cancers, Anal Carcinogens Carcinoma CDKN2A Gene Diagnosis Infection Neoplasms Neurosecretory Systems Patients Squamous Cell Carcinoma Warts
The main training dataset contains 25331 dermoscopic images, acquired at multiple sites and with different preprocessing methods applied beforehand. It contains images of the classes melanoma (MEL), melanocytic nevus (NV), basal cell carcinoma (BCC), actinic keratosis (AK), benign keratosis (BKL), dermatofibroma (DF), vascular lesion (VASC) and squamous cell carcinoma (SCC). A part of the training dataset is the HAM10000 dataset which contains images of size 600 × 450 that were centered and cropped around the lesion. The dataset curators applied histogram corrections to some images [1] . Another dataset, BCN_20000, contains images of size 1024 × 1024. This dataset is particularly challenging as many images are uncropped and lesions in difficult and uncommon locations are present [2] . Last, the MSK dataset contains images with various sizes.
The dataset also contains meta-information about the patient's age group (in steps of five years), the anatomical site (eight possible sites) and the sex (male/female). The meta data is partially incomplete, i.e., there are missing values for some images.
In addition, we make use of external data. We use the 955 dermoscopic images from the 7-point dataset [3] . Moreover, we use an in-house dataset which consists of 986 images. For the unknown class, we use 353 images obtained from a web search. We include images of healthy skin, angiomas, warts, cysts, and other benign alterations. The key idea is to build a broad class of skin variations that should encourage the model to assign any image that is not part of the eight main classes to the ninth broad pool of skin alterations. We also consider the three types of meta data for our external data, if it is available.
For internal evaluation, we split the main training dataset into five folds. The dataset contains multiple images of the same lesions. Thus, we ensure that all images of the same lesion are in the same fold. We add all our external data to each of the training sets. Note that we do not include any of our images from the unknown class in our evaluation as we do not know whether they accurately represent the actual unknown class. Thus, all our models are trained to predict nine classes but we only evaluate on the known, eight classes.
We use the mean sensitivity for our internal evaluation which is defined as S=1Ci=1CTPiTPi+FNi where TP are true positives, FN are false negatives and C is the number of classes. The metric is also used for the final challenge ranking.
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Publication 2020
Actinic Keratosis Age Groups Angioma Blood Vessel Body Regions Carcinomas, Basal Cell Cyst Dermoscopy Hypersensitivity Keratosis Males Melanocytic Nevus Melanoma Sclerosing Angiomas Skin Squamous Cell Carcinoma Warts Woman
The study population consisted of men who met the following eligibility criteria: (a) ages 18 to 70 years; (b) residents of one of three sites—São Paulo, Brazil; the state of Morelos, Mexico; or southern Florida, United States; (c) reported no prior diagnosis of penile or anal cancers; (d) have never been diagnosed with genital or anal warts; (e) currently report no symptoms of a sexually transmitted infection or treatment for a sexually transmitted infection; (f) not participating in an HPV vaccine study; (g) no history of HIV or AIDS; (h) no history of imprisonment, homelessness, or drug treatment during the past 6 months; and (i) willing to comply with 10 scheduled visits every 6 months for 4 years with no plans to relocate within the next 4 years.
Men were recruited from three different population sources—the general population, universities, and organized health care systems (Mexico only)—to increase access to men with a broad range of ages, sexual behaviors, and HPV risk. In Brazil, men were recruited from the general population at a facility for urogenital care (Centro de Referencia e Tratamento de Doencas Sexualmente Transmissiveis e AIDS) and through general media advertising. Men presenting for non–sexually transmitted infection–related conditions were enrolled in the present study. In addition, the spouses and partners of women participating in a large cohort study of the natural history of HPV infection and risk of cervical neoplasia conducted in São Paulo since 1993 were also recruited.
At the Cuernavaca, Mexico site, the underlying population was comprised of employees and beneficiaries of the Instituto Mexicano de Seguro Social, factory employees, and officials of the Mexican army that are permanently assigned to this geographic area. In the United States, the underlying population was from the University of South Florida and the greater Tampa metropolitan area. Flyers and posters were distributed throughout the campus and community, and we administered monthly educational presentations. In addition, men from the broader Tampa Bay, FL community were recruited through the mail and media using brochures and flyers as well as advertisements in local and university papers.
Publication 2008
Acquired Immunodeficiency Syndrome Anus Cancers, Anal Eligibility Determination Genitalia Human Papilloma Virus Vaccine Infantile Neuroaxonal Dystrophy Papillomavirus Infections, Human Penis Pharmaceutical Preparations Sexually Transmitted Diseases System, Genitourinary Uterine Cervical Neoplasm Warts Woman

Most recents protocols related to «Warts»

Over a period of seven months, an interventional study involving 94 cases was carried out in a tertiary care center to know the therapeutic outcomes and efficacy of the MMR vaccine in viral warts. At three-week intervals, a volume of 0.3 ml of MMR vaccine was reconstituted with sterile water and injected into the largest wart until complete remission, or for a maximum of three treatments. Patients were examined after a six-month observation period to look for recurrence, and the degree of response was classified as total, partial, or none at all. Prior approval from the Ethics committee was taken. A total of 100 patients with veruca vulgaris (common warts) attending the outpatient department (OPD) of dermatology and giving written consent were enrolled, out of which six cases were lost to follow-up. Hence 94 cases were studied.
Inclusion criteria
Healthy male and female (without childbearing potential) aged 10 to 45 years with a clinical diagnosis of verruca vulgaris, no concurrent systemic, or topical treatment of warts within the past two weeks attending the dermatology OPD, and cases with multiple common warts. Multiple warts were defined as more than five common warts at a single anatomic site or one or more common warts at more than one anatomical site. 
Exclusion criteria and methods
Cases with fever or signs of any inflammation or infection, systemic and/or cutaneous diseases, asthma or allergic skin conditions, meningitis, or convulsions in the past, history of any live vaccine or immunoprophylactic drug within the last three months, and immunocompromised cases were excluded from the study. After informed consent, detailed history was taken followed by a proper cutaneous examination. 
MMR vaccine was reconstituted with sterile water and a volume of 0.3 ml was injected with an insulin syringe into the base of the largest wart. This was repeated every three weeks until complete clearance of all warts or for a maximum of three treatments. The response was graded as complete, partial, or no response and was followed up after a period of six months to detect recurrence if any.
Friedman test was used to analyze the relationships between variables. A mean rank table was established to assess the final outcome of the study.
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Publication 2023
Administration, Topical Asthma Body Regions Diagnosis Ethics Committees Fever Infection Inflammation Insulin Males Measles-Mumps-Rubella Vaccine Meningitis Outpatients Patients Pharmaceutical Preparations Recurrence Seizures Skin Diseases Sterility, Reproductive Syringes Vaccines, Attenuated Warts Woman
The fruits of N. hypoleucum Kurz were collected from Ban Phra sub-district, Mueang district, Prachinburi province, Thailand (14°07′28.7″ N, 101°24′18.7″ E) in May, 2021 (120–140 days after flowering). A bunch contains about 10–15 fruits or more (Figure 1A). The shape of the fruit is round to elliptic with red color, and it possesses densely warty skin. The fruit size was measured using a digital vernier with a 0.01 mm/0.0005″ measuring range (Protronics Co., Ltd., Pathum Thani, Thailand) and it was found that the fruit exhibited 1.60 ± 0.09 cm in diameter and 2.08 ± 0.19 cm in length (n = 10). The samples were identified and authenticated by Dr. Sunisa Sangvirotjanapat (Mahidol University, Nakhon Pathom, Thailand) according to a reliable reference [9 ]. Dry samples were sent to Sireeruckhachati Nature Learning Park, Mahidol University (Nakhon Pathom, Thailand) for collection with assigned voucher specimen as PBM-005647.
All fresh samples were cleaned using deionized water before air-drying at room temperature for 2–3 h. The samples were then collected into three parts: aril (flesh), pericarp (peel) and seed (Figure 1B). Fresh aril was divided into two parts, one as fresh sample for nutritive values analysis and the other underwent freeze-drying utilizing a PL9000 freeze dryer (Heto Lab Equipment, Allerod, Denmark) for other experiments along with pericarp and seed. A Phillips 600 W series grinder (Phillips Electronics Co., Ltd., Jakarta, Indonesia) was used to grind the dry samples into powder. The powdery samples were then placed in vacuum aluminum foil bags and stored at −20 °C for further analysis.
Colors of fresh and dry fruits (aril, pericarp and seed) were examined utilizing a ColorFlex EZ spectrophotometer (Hunter Associates Laboratory, Reston, VA, USA) and presented as CIELAB units (L* for dark (−) to white (+), a * for green (−) to red (+) colors, and b * for blue (−) to yellow (+) colors), as shown in Supplementary Table S1. A Halogen HE53 moisture analyzer (Mettler-Toledo AG, Greifensee, Switzerland) was used for analyzing the moisture content of dry sample, as shown in Supplementary Table S2.
The extraction of the sample was carried out based on the previous study [2 (link)] with some modifications as follows. Briefly, the solvent containing 80% (v/v) ethanol (15 mL) was added to the powdery sample (3 g), and the reaction was shaken in a WNE45 temperature-controlled water bath shaker (Memmert GmBh, Eagle, WI, USA) at 30 °C for 4.5 h. The extractants were then collected by centrifugation at 3800× g for 10 min utilizing a Hettich® ROTINA 38R refrigerated centrifuge (Andreas Hettich GmbH, Tuttlingen, Germany) before filtering through a 0.22 µm polyethersulfone (PES) syringe filter. The filtrates were kept in a freezer at −20 °C until analysis.
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Publication 2023
Aluminum Bath Centrifugation Eagle Ethanol Fingers Freezing Fruit Halogens polyether sulfone Powder Reston Skin Solvents Specimen Collection Syringes Vacuum Warts
The patients selected had surgical resection of anal and perianal warts between 1/1/2016 and 1/1/2021 (60 months) in the 3rd Surgical Department of University General Hospital of Thessaloniki AHEPA, by a single surgical team. Patient data were collected using the histopathological reports of the specimens resected, which were acquired from the Histopathology Laboratory of Aristotle University of Thessaloniki, along with the patient records from the 3rd Surgical Department’s archive. Inclusion criteria included excision of anal and perianal lesions and exclusion criteria included final histopathological results of CA with high grade, mild-moderate dysplasia, and SCC.
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Publication 2023
Anus Operative Surgical Procedures Patients Warts
MD simulations were performed on PTEN mutant systems using the updated CHARMM program with the modified all-atom force field (version 36m) (Brooks et al., 2009 (link); Huang et al., 2017 (link); Klauda et al., 2010 (link)). Our computational studies closely followed the same protocol as in our previous works (Grudzien et al., 2022 (link); Haspel et al., 2021 (link); Jang et al., 2016a (link); Jang et al., 2019 (link); Jang et al., 2016b (link); Jang et al., 2021 (link); Jang et al., 2020 (link); Liao et al., 2020 (link); Liu et al., 2022b (link); Liu et al., 2022c (link); Maloney et al., 2021 (link); Maloney et al., 2022 (link); Weako et al., 2021 (link); Zhang et al., 2021a (link); Zhang et al., 2021b (link)). Prior to productions runs, a series of minimization and dynamics cycles were performed for the solvents including ions and lipids with a harmonically restrained protein backbone until the solvent reached 310 K. Next, preequilibrium simulations with dynamic cycles were performed while gradually releasing the harmonic restraints on the backbones of PTEN mutants. The particle mesh Ewald (PME) method was used to calculate the long-range electrostatic interaction, and the van der Waals (vdW) interactions using switching functions with the twin range cutoff at 12 Å and 14 Å were calculated for the short-range interaction between atoms. In the production runs, the Nosé-Hoover Langevin piston control algorithm was used to sustain the pressure at 1 atm, and the Langevin thermostat method was employed to maintain the constant temperature at 310 K. The SHAKE algorithm was applied to constrain the motion of bonds involving hydrogen atoms. Simulations were performed for eight mutant systems each with 1 μs, and additional simulations for the same systems were also performed to check reproducibility. The production runs were performed with the NAMD parallel-computing code (Phillips et al., 2005 (link)) on a Biowulf cluster at the National Institutes of Health (Bethesda, MD). The result analysis was performed in the CHARMM program (Brooks et al., 2009 (link)). To determine the most populated conformation, the ensemble clustering in Chimera (Pettersen et al., 2004 (link)) was implemented to obtain the conformational representatives. The weighted implementation of suboptimal path (WISP) (Van Wart et al., 2014 (link)) algorithm was used to identify the allosteric signal propagation pathways through the protein. To observe conformational changes in proteins, the normal mode analysis (NMA) and principal component analysis (PCA) were conducted by the ProDy program (Bakan et al., 2011 (link)). In the analysis, averages were taken afterward discarding the first 200 ns trajectories.
Publication Preprint 2023
Chimera Electrostatics Hydrogen Ions Lipid A Pressure Proteins PTEN protein, human Signal Pathways Solvents Tremor Twins Vertebral Column Warts
Approximately, a total of 85 R. roxellanae were available for research in Shennongjia Nature Reserve. The monkeys were distributed across three regions: Region I: there were about 60 free-ranging monkeys lived in the Dalongtan area, which were composed of four one-male units (OMU) and one all male unit (AMU); Region II: Shennongjia snub-nosed monkey breeding base where 15 monkeys were kept and randomly divided into three OMUs by animal keepers; each unit was independently caged in one steel house; and Region III: Xiaolongtan area is the place where the injured monkeys rescued from different areas of Shennongjia Reserve were cared; 10 monkeys in a cage were taken as one unit. In total, we collected fresh fecal samples from 38 monkeys including 30 wild monkeys from Regions I and eight captive monkeys from II (six, three healthy and three diarrheal) and III (two, one healthy and one diarrheal monkeys) respectively in July 2012. Monkey age, raising patterns, sex, and health status were recorded (additional file 1). The monkey age was determined by their coat color, body length and wart-like growth at the corners of the mouth as described previously [27 ]. Meanwhile, the health status of the monkeys was clinically determined by observing their bright coats, movement (lively, powerful), good appetite, fecal shape, and color.
All the wild and captive monkeys were fed three times per day (10:00–11:00, 14:00–15:00, and 18:00–19:00). The wild monkeys from region I usually came quickly from the wild to the trees in the feeding place at the fixed time after hearing the call of the staff. Then they jumped down from the trees to get the food and ate it. After feeding, they immediately went back to the mountain for their free-living in the wild and could get more food in the forest. Meanwhile, the monkeys in regions II and III were kept and fed in their cages at similar timepoints.
Fecal samples were collected from the monkeys by using the protocol described previously [2 (link)]. Briefly, fecal samples were collected during one week by two researchers before feeding time in the morning (10:00–11:00) and afternoon (14:00–15:00), when the monkeys had already gone down the mountain, gathered in the trees at the feeding place and waited for their food. Each researcher was responsible for one monkey unit per time. Fresh fecal samples were immediately collected into sterile tubes. For the diarrheal fecal samples, sterile cotton swabs were used and dipped the feces in the center carefully for several times to collect feces as many as possible, and stored into sterile tubes as well. Samples were stored at -80 °C at Shennongjia Reserve and transported to our laboratory on dry ice and stored at -80 °C until DNA extraction. Microbial DNA from fecal samples was extracted using QIAamp DNA stool mini kits (Qiagen, CA, USA) following standard protocols.
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Publication 2023
Animals Diarrhea Dry Ice Feces Food Forests Gossypium Human Body Males Monkeys Movement Oral Cavity Rhinopithecus Steel Sterility, Reproductive Trees Warts

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More about "Warts"

Warts are a common skin condition caused by the human papillomavirus (HPV).
These benign growths can appear on any part of the body, but are most frequently found on the hands and feet.
Warts can vary in appearance, ranging from small, smooth bumps to larger, rougher lesions.
While generally harmless, warts can be unsightly and may cause discomfort.
Treatment options for warts include topical medications like salicylic acid, cryotherapy (freezing), and laser therapy.
Researchers are continually working to better understand the epidemiology, pathogenesis, and optimal management of warts.
Key subtopics include HPV infection, skin growths, bumps and lesions, topical treatments, cryotherapy, and laser therapy.
PubCompare.ai's AI-driven platform can enhance accuracy in warts research by helping researchers locate relevant protocols from literature, pre-prints, and patents.
Using AI-driven comparisons, researchers can identify the best protocols and products for their warts-related studies, streamlining the research process.
Relevant tools and products include the QIAamp DNA Mini Kit, RNeasy Mini Kit, Meloxicam, Cesium chloride, 2100 Bioanalyzer, Slide-A-Lyzer cassette, and the NextSeq 500.