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Sex Deviations

Sex deviations refer to atypical sexual behaviors or preferences that deviate from societal norms.
This MeSH term encompases a broad range of topics, including paraphilias, fetishism, and atypical sexual interests.
Researchers studying sex deviations can utilize PubCompare.ai's AI-driven platform to effortlessly locate relevant protocols from the literature, preprints, and patents.
The advanced comparison tools help identify the most effective and reproducable methods, enhancing the accurracy and reproducibility of research in this complex field.

Most cited protocols related to «Sex Deviations»

Sex comparisons were run on the O_niloticus_UMD1 assembly for two species of tilapia, O. niloticus and O. aureus. The O. niloticus sequence data used in this study was previously described [48 (link)]. The O. aureus individuals used were F1 individuals derived from a stock originally provided by Dr. Gideon Hulata (Institute of Animal Science, Agricultural Research Organization, The Volcani Center, Bet Dagan, Israel) and maintained at University of Maryland. These animal procedures were conducted in accordance with University of Maryland IACUC Protocol #R-10-74. A total of 58 O. niloticus XY males, 33 O. niloticus XX females, 22 O. aureus ZZ males and 22 O. aureus WZ females were pooled separately, sheared to ~500 bp on a Covaris shearer, and sequenced on an Illumina HiSeq 2000. The reads from each pool were separately mapped to O_niloticus_UMD1 using BWA mem (v0.7.12). The alignments were sorted and duplicates were marked with Picard (v2.1.0). Alignments were converted into an mpileup file using Samtools (v0.1.18) and subsequently into a sync file using Popoolation2 (v1201) [78 (link)]. Estimates of FST and analyses of sex-patterned variants (SNPs and short deletions that are fixed or nearly fixed in the homogametic sex and in intermediate frequency in the heterogametic sex) were carried out using Sex_SNP_finder_GA.pl (https://github.com/Gammerdinger/sex-SNP-finder). For the O. niloticus sex comparison, the XX females were set to be the homogametic sex. For the O. aureus comparison, the ZZ males were set to be the homogametic sex.
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Publication 2017
Animals Dagan Females Gene Deletion Institutional Animal Care and Use Committees Males Sex Deviations Tilapia
In UK Biobank, we performed logistic regression of COPD, adjusting for
age, sex, genotyping array, smoking pack-years, ever smoking status, and
principal components of genetic ancestry. Association analysis was done using
PLINK 2.0 alpha114 (link)(downloaded on December 11, 2017) with Firth-fallback settings, using Firth
regression when quasi-complete separation or regular-logistic-regression
convergence failure occurred. We performed a fixed-effects meta-analysis of all
ICGC cohorts and UK Biobank using METAL (version 2010–08-01)115 (link). We assessed population
substructure and cryptic relatedness by linkage disequilibrium (LD) score
regression intercept10 (link). We
defined a genetic locus using a 2-Mb window (+/−1 Mb) around a lead
variant, with conditional analyses as described below.
To maximize our power to identify existing and discover new loci, we
examined all loci at the genome-wide significance value of P< 5 × 10−8. We first characterized loci as being
previously described (evidence of prior association with lung function12 (link)–20 (link),116 (link),117 (link) or
COPD5 (link),11 (link),118 (link)) or novel. We defined previously reported signals if they
were in the same LD block in Europeans119 (link) and in at least moderate LD (r2 >=
0.2). For novel loci we attempted replication through association of each lead
variant with either FEV1 or FEV1/FVC ratio in SpiroMeta,
using one-sided P-values with Bonferroni correction for the
number of novel loci examined. Novel loci failing to meet a Bonferroni-corrected
P-value were assessed for nominal significance (one-sided
P < 0.05) or directional consistence with
FEV1 and FEV1/FVC ratio in SpiroMeta.
Cigarette smoking is the major environmental risk factor for COPD and
genetic loci associated with cigarette smoking have been reported5 (link),120 (link). While we adjusted for cigarette smoking in our
analysis, we further examined these effects by additionally testing for
association of each locus with cigarette smoking and by looking at two separate
analyses of ever- and never- smokers in UK Biobank. We tested for sex-specific
genetic effects of genome-wide significant variants via a stratified analysis
and interaction testing, using a 5% Bonferroni-corrected threshold to determine
significance (Supplementary
Note
).
Publication 2019
CFC1 protein, human Chronic Obstructive Airway Disease DNA Replication Gene Components Genetic Loci Genome Lung Metals Sex Deviations
Sex specific standard deviation scores (SDS) for height, weight and BMI were estimated using internally generated growth charts. The growth charts were constructed using the LMS (L = skewness; M = median; S = coefficient of variation) method (28 (link)). This is preferable to the use of an external reference, which can be misleading for historical cohorts (29 ).
In initial descriptive analyses, cross-sectional associations between each genotype and height, weight and BMI SD scores at each age were performed using linear regression assuming an additive genetic model, with adjustment for sex.
Longitudinal analyses were performed using hierarchical mixed models. These models take account of the correlation between repeated measures on the same individual and allow for incomplete outcome data on the assumption that data are missing at random. To initially test whether the association between genotype and each measure of body size (BMI, weight and height) changed with age, we first fitted linear age and genotype-by-age interaction terms, then added, in turn, quadratic and cubic ages and their interactions with genotype. For simplicity of presentation, and because the findings were very similar to those from the polynomial age models, we then fitted linear piecewise models with a knot at 20 years to allow different slopes for childhood (2–20 years) and adulthood (20–53 years) for BMI. The intercept was allowed to vary according to allele frequency in an additive genetic model. Genotype-by-linear age interaction terms (one for 2–20 years and another for 20–53 years) were then added to the model to assess whether the effect of genotype changed with increasing age. Likelihood ratio tests were used to assess the improvement in fit on addition of each new term in the model. We allowed for a random intercept and random slopes. For the weight trajectories, similar models were fitted except that baseline was taken as birth, due to the availability of birth weight data. For height, baseline was at age 2 years and change in height was modelled only to adulthood using a single slope. Because the first two measures of adult height (at age 20 and 26 years) were self-reported, height at 36 years was used as final attained adult height and was assumed to have been achieved by age 20 years.
Tests for sex interactions were not statistically significant, and therefore all models included both men and women and were adjusted for sex. Analyses were performed using Stata version 10.1.
Publication 2009
Adult Birth Birth Weight Body-Weight Trajectory Cuboid Bone Genotype Measure, Body Sex Deviations Woman
To compare the direct effect of the PGI on various phenotypes to its population effect, we used data on siblings and trios from UKB3 (link), GS7 (link), and STR38 (link). In both UKB and GS, first-degree relatives were identified using KING with the “--related --degree 1” option72 . For parent-offspring relations, the parent was identified as the older individual in the pair. We removed 621 individuals from GS that had been previously identified by GS as being also present in UKB (Supplementary Note section 7.3).
We analyzed PGIs for EA and cognitive performance in all three samples, and height and BMI only in UKB and GS. PGIs were made using GWAS results that exclude GS, STR and all related individuals of up to third degree from UKB (Supplementary Note section 7.3), following the LDpred PGI pipeline described in Supplementary Note section 5.1.
We selected 23 phenotypes related to education, cognition, income, and health (Supplementary Table 9) available in at least one of the datasets. For each phenotype in each dataset, we first regressed the phenotype onto sex and age, age2 (link), and age3 (link), and their interactions with sex. In addition, for UKB, we included as covariates the top 40 genetic PCs provided by UKB and the genotyping array dummies3 (link). For GS and STR, we included the top 20 genetic PCs (see Supplementary Note section 5.3 for how the PCs were created). We then took the residuals from the regression of the phenotype on the covariates and normalized the residuals’ variance within each sex separately, so that the phenotypic residual variance was 1 in each sex in the combined sample of siblings and individuals with both parents genotyped. The PGIs of the phenotyped individuals were also normalized to have variance 1 in the same sample. Thus, effect estimates correspond to (partial) correlations, and their squares to proportions of phenotypic variance explained.
We give an overview of the statistical analyses performed here, with details in Supplementary Note section 7.4. In the siblings, we regressed individuals’ phenotypes onto the difference between the individual’s PGI and the mean PGI among the siblings in that individual’s family, and the mean PGI among siblings in that family. In trios, we regressed phenotypes onto the individual’s PGI and the individual’s father’s and mother’s PGIs. In both the siblings and trios, we used a linear mixed model to account for relatedness in the samples. We meta-analyzed the results from the siblings and trios, accounting for covariance between the estimates from the sibling and trio samples from the same datasets. We applied a transformation to the meta-analysis that accounts for assortative mating to estimate the population effect of the PGI and the difference between the direct and population effects.
Publication 2022
Cognition Genome-Wide Association Study Mothers Parent Phenotype Phenotypic Sex Reproduction Sex Deviations TRIO protein, human
Means and standard deviations (SD) were calculated for continuous variables to describe baseline characteristics. The distribution of moderate-to-vigorous activity was skewed and was therefore log-transformed to achieve normality. All adiposity and activity values were converted to sex-specific SD (z) scores.
Observational associations between adiposity and activity measures were assessed using linear regression adjusted for age. Additional analyses were adjusted for potentially confounding factors that have been found to be independently associated with obesity [44] (link), including maternal pre-pregnancy BMI, estimated gestational age at birth, infant birth weight, maternal education level, parental social class, maternal smoking during pregnancy, child's stage of puberty at age 11 y, total daily dietary intake, and intake of main food groups.
For investigating associations between the allelic score and standardised phenotypes, continuous effects were estimated using linear regression with adjustment for age. An additive genetic model was assumed since there was no evidence for interaction effects among the SNPs combined in the allelic score [33] (link). MR analysis may generally forego the need for inclusion of other covariates, which are anticipated to be randomly distributed with respect to genotype [23] (link). Despite this, we examined associations between the confounding factors and genotypes to check the core instrumental variable assumption that the instrument (genotype) is independent of factors that potentially confound the observational association [25] (link),[26] (link).
For MR analyses, we performed two-stage least squares using the weighted allelic score as an instrument for adiposity and implementing the “ivreg2” function in Stata. F-statistics from the first-stage regression between genotype and adiposity were examined to check the instrumental variable assumption that the instrument is sufficiently associated with the exposure, in order to reduce the possibility of weak instrument bias [45] . The Durbin-Wu-Hausman (DWH) test for endogeneity [46] was used to compare effect estimates from the second stage of the instrumental variable analysis and observational analysis. Stata 12 (StataCorp) was used for all analyses.
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Publication 2014
Alleles Birth Weight Childbirth Debility Eating Genotype Gestational Age Mothers Obesity Parent Phenotype Pregnancy Puberty Sex Deviations Single Nucleotide Polymorphism

Most recents protocols related to «Sex Deviations»

An Oragene DNA Kit (DNA Genotek, Ottawa, Canada) was used to collect ≥ 2 mL of saliva from each subject. From these samples, genomic DNA extraction and genotyping were conducted using an Axiom Japonica array (Toshiba, Tokyo, Japan) [14 (link)] by Cell Innovator Co., Ltd (Fukuoka, Japan), resulting in ~ 660,000 genetic variants among 94 study subjects, with a < 3% missing rate of the genotype data. Subsequently, we filtered out the genetic variants described below using PLINK ver. 1.90 [15 (link)]. After checking gender matching between phenotypic records and heterozygosity of genetic variants on chromosome X and cryptic relatedness between DNA samples (proportion identity with a descent threshold of ≥ 0.1875), we performed quality control (QC) of the genotype data and discarded the following variants: variants with a call rate of < 0.97, variants for which the genotype distribution significantly (p < 0.0001) deviated from the Hardy–Weinberg equilibrium, variants with a minor allele frequency (MAF) of < 0.005, and variants on sex chromosomes and the mitochondrial genome. Consequently, 622,446 genetic variants were used for genotype imputation.
After prephasing the genotype data that passed QC via SHAPEIT v2.r904 [16 (link), 17 (link)], untyped genotype data were imputed with the 1000 Genomes Project (1KGP) reference panel (phase 3) using IMPUTE2 ver. 2.3.2 [18 (link)] (Ne = 20,000; chunk size = 5 Mb). Genetic variants with low imputation quality (info score of < 0.5) were discarded when the imputed output data were converted into PLINK format data using GTOOL ver. 0.7.5 (https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html). We also conducted QC for the imputed genotype data in the same manner, although a 1% MAF threshold was set for the imputed data.
To assess population stratification on a genome-wide scale, we performed principal component analysis (PCA) using the Japonica array genotype data that passed QC in the JPQ cohort after removing genetic variants with a MAF of < 0.05 as well as datasets of five East Asian populations [CDX (Chinese Dai in Xishuangbanna, China), CHB (Han Chinese in Beijing, China), CHS (Southern Han Chinese), JPT (Japanese in Tokyo, Japan), and KHV (Kinh in Ho Chi Minh City, Vietnam)] retrieved from 1KGP [19 (link)] phase 3 reference panels (NCBI Build GRCh37; http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase3_v5a). The datasets of 1KGP populations were generated from variant call format (VCF) data using the PLINK program after the VCF data were converted to the binary VCF data using SAMtools/BCFtools ver. 1.9 [20 (link)]. To detect possible population outliers, PCA was also conducted using the genotype data of the JPQ cohort only.
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Publication 2023
Cells CFC1 protein, human Chinese Chromosomes East Asian People Genetic Diversity Genome Genome, Mitochondrial Genome-Wide Association Study Genotype Heterozygote Japanese Phenotype Saliva Sex Deviations X Chromosome
The most precise measure of the reproductive success of individuals involves the genotyping of offspring and potential parents. In our study, this was not possible because the capture of small group members requires destruction of the shelters, which dissolves groups (14 , 22 (link), 97 ) and hence would have obstructed the collection of long-term life history data. Fortunately, several field studies of fish from the same population provided good estimates of the reproductive share within N. pulcher groups (14 , 96 (link), 97 ), revealing that reproductive success is greatly biased toward the dominants (15 , 36 ). Because of differences in the reproductive potential of the two sexes [the polygynous mating pattern renders a much higher maximum reproductive success for males than for females (67 )] and annual variation in colony-wide reproductive success, we standardized the reproductive success estimates of all marked individuals by transforming our counts of juveniles below helper size in each group into sex- and year-specific Z scores. Note that this estimates only the direct reproductive success of individuals, omitting any potential indirect fitness gains by helper effects on relatives. First, we calculated each individual’s expected share in its group’s reproduction based on the most recent parentage study in the same population (14 ): We assumed that dominant males sired 76% of offspring and that dominant females were the mothers of 82% of offspring. We further assumed that large (i.e., mature; >3.5-cm SL) subordinates in a group equally shared either 11% (males) or 5% (females) of their group’s reproductive success (assigning the remaining reproductive success to “unknown” individuals) (14 ). While it is possible that dispersal affects reproductive sharing in groups (54 (link)), these effects are unlikely to explain the patterns of reproductive success and dispersal behavior we report here (fig. S14B). Hence, we had information about an individual’s sex, social status, and reproductive success in a given year in 355 cases. On the basis of these, we calculated sex- and status-specific average annual reproductive success, i.e., average reproductive success in a given year of dominant females, dominant males, subordinate females, and subordinate males, respectively. For each individual, we then calculated its relative reproductive success throughout the observation period: sex- and status-specific Z scores were calculated for each individual and each year in which it was observed and then summed over the number of observation years [i.e., Z=xijkx¯jkSjk , where xijk is the reproductive success of individual i of sex j and status k, x¯jk is the average annual reproductive success of individuals of sex j and status k, and Sjk is the standard deviation of annual reproductive success of individuals of sex j and status k (98 (link))]. We calculated Z scores for each individual throughout the observation period as a measure of its relative reproductive success compared to other individuals of the same sex and status (dominant or subordinate) observed at the same time.
Publication 2023
Females Fishes Gender Males Mothers Parent Reproduction Sex Characteristics Sex Deviations

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Publication 2023
Fatal Outcome Isoptera Larva Nymph Sex Deviations Workers
In order to describe qualitative or categorical variables, we used frequencies and percentages and to describe quantitative variables we used means, and standard deviation; these were used instead of median and ranges (considering the non-parametric distribution of the data) because they better reflected the differences observed between sexes. In order to verify the distribution of the data, we used the Kolmogorov–Smirnov test. In order to compare categorical variables between sexes we used a chi-squared test. To compare the psychological variation between sexes, we used the Man–Whitney U test, considering the non-parametric distribution of these variables. To perform correlations between psychological variables, we used the Spearman correlation test. Finally, a multiple regression analysis, with the stepwise method for stress as a dependent variable, was performed for each sex, in order to determine the variables significantly correlated with stress after adjustment for confounders in both sexes. In this analysis, we excluded the variables anxiety and depression (in order to detect the coping strategies most associated with stress, excluding the variables most associated with stress: anxiety and depression). All analyses were performed with the software SPSS v. 25, and a p value < 0.05 was considered significant.
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Publication 2023
Anxiety Gender Sex Deviations
This study was designed to investigate sex-related variations in the transcriptome of M1 macrophages during the LDL internalization process. Healthy plasma donors were recruited in an anonymized form at the Institute’s central blood bank. The study was approved by the National Institute of Genomic Medicine (25/2011/I).
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Publication 2023
Donors Genome Macrophage Plasma Sex Deviations Transcriptome

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More about "Sex Deviations"

Sex deviations, also known as atypical sexual behaviors or preferences, encompass a wide range of topics including paraphilias, fetishism, and other unconventional sexual interests.
Researchers studying this complex field can utilize AI-driven platforms like PubCompare.ai to effortlessly locate relevant protocols from the literature, preprints, and patents.
The advanced comparison tools provided by PubCompare.ai can help identify the most effective and reproducible methods, enhancing the accuracy and reproducibility of research in this area.
This is particularly important when using specialized equipment and software such as the Lunar iDXA, SAS 9.4, Harpenden stadiometer, SAS version 9.4, QDR4500A scanner, SPSS version 20, Stata V.15, Hologic software version 11.2:3 for Windows, and Access Testosterone assay.
By leveraging the insights and capabilities of PubCompare.ai, researchers can streamline their workflow, stay up-to-date with the latest developments, and ensure their studies adhere to best practices.
This can lead to more robust and reliable findings, contributing to a deeper understanding of sex deviations and related phenomena.
The platform's user-friendly interface and advanced analytics make it an invaluable tool for researchers in this field.